Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025394.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq36615 105 5e-19 seq70391 82.4 5e-12 seq17807 82.4 5e-12 >seq36615 Length=1239 Score = 105 bits (116), Expect = 5e-19 Identities = 312/472 (66%), Gaps = 7/472 (1%) Strand=Plus/Plus Query 6381 GTTCCGTTATT-TCATGGATTGACTATGGCAGATGATATGACGGCTGTGATCaaaaaaaT 6439 ||||| |||| ||| || ||||| ||||| |||||| | || |||| ||| ||| | Sbjct 155 GTTCCCCTATTCTCAGGG-TTGACAATGGCCGATGATCTCACAAAAGTGACCAAGAAACT 213 Query 6440 GATGGAGAGTTC-ATCAGGTCAGGGTCTCAACGATTATTCTTCAATATGTCTGGCTAATC 6498 | || | || |||| ||||| | ||||| ||| || | ||| || || | Sbjct 214 CCTCGACAACTCGATCAAC-CAGGGCCAGGTTGATTACCGTTCCATTTCTCTAGCCAACC 272 Query 6499 ACATTGATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGACCTGTTTTCC 6558 | |||| || |||||||||||||||||||| ||| || |||||| ||||| ||| Sbjct 273 ATGTTGACTACGAGAAATGGAACAATCATCAAAGAGTGGAAGCAAATGACCCTGTCTTCA 332 Query 6559 GTGTCATGGGTCAGTTCTTGGGATTTCCTAACCTTATATCCA-GGACTCATGAATTCTTT 6617 |||| || || | || || | ||| || | | | || | |||| | |||||| Sbjct 333 CCATCATTGGGAAGGTTTTTGG-TCTCCCAAATGTCTTTGCACGCACTCCCGCATTCTTC 391 Query 6618 GAAAAAAGTCTGATATATTACAATGGGAGACCAGATTTGATGAAAGTGCAAGGAAATTCA 6677 || ||||||| | ||||| | |||||||| ||||| |||| ||| ||||| Sbjct 392 CAAGAAAGTCTTGTGTATTATGGTCCCCGACCAGATCTGATGGAAGTTGTGGGAGATTCA 451 Query 6678 TTAGTCAATAACAGCAATCAGCGGGTATGTTGGAACGGACAGGCAGGAGGTTTGGAGGGC 6737 | ||| || || | ||| |||||| | |||||| || || ||||| || Sbjct 452 GTGTGCAACAAAGGCTCT-TTTTGGTGTGTTGGGAAGGACAGCTTGGTGGATTGGAAGGA 510 Query 6738 TTGAGGCAAAAGGGATGGAGTATTTTGAACCTATTGGTTATCCAGCGAGAATCCAAGATC 6797 |||| || ||||| |||||||| | || || | ||| | | || || |||||| | Sbjct 511 CTGAGACAGAAGGGTTGGAGTATCGTCAATCTCCTTGTTTTGCTTCGTGAGGCCAAGACC 570 Query 6798 AGAAATACCGCAGTGAAGGTGTTGGCACAGGGTGATAATCAAGTAATCTGTA 6849 | ||||| || || | ||||| || || |||||| | || |||| Sbjct 571 CGGAATACATTGGTCAAAACACTCGCACAAGGAGACAATCAACTCATATGTA 622 >seq70391 Length=2338 Score = 82.4 bits (90), Expect = 5e-12 Identities = 268/414 (65%), Gaps = 22/414 (5%) Strand=Plus/Plus Query 6253 ATGATCTGGTAATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGATTCT 6312 |||| || | || || |||||||| || ||| | || | ||| | ||| | |||| Sbjct 1826 ATGACCTCATCATCGGTCTCAAAGGCAAAGAACGCGAAATTAAGTAAGAAGGAAGGTTCT 1885 Query 6313 TTTCGTTAATGTCTTGGA-GATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAAA 6371 |||| || ||||| |||| ||| | || | |||||||| | ||||| | |||| ||| Sbjct 1886 TTTCCTTGATGTCATGGAAGATGA-GGCAGTACTTTGTCACAACTGAACACCTGATCAAA 1944 Query 6372 ACACACTTTGTTCCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGATC 6431 | | ||| || | || | || ||| | ||| || || | Sbjct 1945 GAATTTTATGTCCCACTGTTCTAGGGGTTGGCAATG---------ATCAC---------C 1986 Query 6432 aaaaaaaTGATGGAGAGTTC-ATCAGGTCAGGGTCTCAACGATTATTCTTCAATATGTCT 6490 |||||| | | || | ||| |||| |||||||| ||| || ||| || | ||| Sbjct 1987 AAAAAACTTCTCGACAATTCTATCAA-TCAGGGTCAGGTCGACTACCGTTCTATTTCTCT 2045 Query 6491 GGCTAATCACATTGATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGACC 6550 || || || |||| ||||||||||||||||| ||||| ||| || |||||| || Sbjct 2046 AGCCAACCATGTTGACTATGAGAAATGGAACAACCATCAAAGAGCTGAAGCAAATGACCC 2105 Query 6551 TGTTTTCCGTGTCATGGGTCAGTTCTTGGGATTTCCTAACCTTATATCCAGGACTCATGA 6610 |||||||| | ||||| ||||| | || |||| | || | | | ||| || Sbjct 2106 TGTTTTCCCCATTATGGGGAAGTTCCTCGGTCTTCCAGAAGTTTTTGCACATATTCACGA 2165 Query 6611 ATTCTTTGAAAAAAGTCTGATATATTACAATGGGAGACCAGATTTGATGAAAGT 6664 |||||| || ||| || |||||||| | |||| ||||||| |||| Sbjct 2166 ATTCTTCCAACCAAGCCTCGTATATTACGGTCCCCGACCGAATTTGATAGAAGT 2219 >seq17807 Length=6784 Score = 82.4 bits (90), Expect = 5e-12 Identities = 425/659 (64%), Gaps = 42/659 (6%) Strand=Plus/Minus Query 6492 GCTAATCACATTGATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGACCT 6551 || || ||| | |||||||| || ||||| ||||||||| | ||| |||| | Sbjct 5187 GCCAACCACGTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACACC 5128 Query 6552 GTTTTCCGTGTCATGGGTCAGTTCTTGGGATTTCCTAACCT-TATATCCAGGACTCATGA 6610 || ||| || ||||| |||||| | | | ||||| | | | | | | || || | Sbjct 5127 GTATTCAAAGTGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTGTTC-GAACACACAA 5069 Query 6611 ATTCTTTGAAAAAAGTCTGATATATTACAATGGGA---GACCAGATTTGATGAAAGTGCA 6667 || || | || ||||| || ||||| |||| ||||||| | ||| ||||| Sbjct 5068 GTTTTTCCAGAACAGTCTCATCTATTA---TGGGCCTCGACCAGACCTAATGGAAGTGAT 5012 Query 6668 AGGAAATTCATT----AGTCAATAACAGCAATCAGCGGGTATGTTGGAACGGACAGGCAG 6723 ||| |||| | ||| || || || || | || |||||| | || ||| | Sbjct 5011 CGGAGATTCCCTCAGAAGTAAAGAA--GCGTTC--CTAGTCTGTTGGGAAGGTCAGCTGG 4956 Query 6724 GAGGTTTGGAGGGCTTGAGGCAAAAGGGATGGAGTATTTTGAA---CCTATTGGTTATCC 6780 |||| | |||||| | | || ||||||||||| || |||| |||| | ||||| Sbjct 4955 GAGGGCTTGAGGGCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGT-GTTAT-- 4899 Query 6781 AGCGAGAATCCAAGATCAGAAATACCGCAGTGAAGGTGTTGGCACAGGGTGATAATCAAG 6840 | |||| |||||| |||||| || |||||| |||| ||||| || ||||| | Sbjct 4898 TGAGAGAGGCCAAGACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGG 4839 Query 6841 TAATCTG-TACTC-AATACAAGAC--AAAACAACA--TCGAACTGACCATGAACTACGAT 6894 ||||||| |||| ||| | | ||| ||||| | | |||| | |||| | Sbjct 4838 TAATCTGCAACTCGTATAAACTCCCGAAATCAACAACCCAAGCTGAGC-TGAA-----AG 4785 Query 6895 CTGCATTGCTCCAAATGAAATTAAATAACGATTTCATCATGGAGGCAATTGAACACGGAA 6954 || | | | || ||| || ||| |||||||||| ||| | | | ||| | Sbjct 4784 CTCGAATCGACGAAGTGATGCAGAACAACTCCATCATCATGGAAGCAGTAGCTCGCGGTA 4725 Query 6955 CTGGAAAATTAGGACTCTTGATAAACCAGGACGAGACTATGCAA---TCAG-CTGATTAT 7010 | |||| | ||||| | || || || || || || |||||| |||| || || | Sbjct 4724 TAGAAAAACTTGGACTGATTATCAATCAAGATGAAACGATGCAAAGCTCAGACT--TTCT 4667 Query 7011 TTGAATTATGGGAAAGTTCCCATTTTCAGAGGTGTCATTAGAGGGTTAGAAACTAAAAGA 7070 || | || || ||||||||| ||| ||||||| || | | || | ||| | Sbjct 4666 TTCA--TACGGCAAAGTTCCCGTTTACAGAGGTAATATCTTACCTCTGGAGGCCAAACGC 4609 Query 7071 TGGTCTCGGGTAACATGTGTGACAAATGATCAGTTGCCTACCTGCGCAAACTTAATGTC 7129 ||||| |||| || ||||| ||||| || ||| | || | | || ||| | ||||| Sbjct 4608 TGGTCAAGGGTCACGTGTGTCACAAACGAACAGATCCCATCTTTGGCCAACGTGATGTC 4550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35332918371408