Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025406.1 Length=11141 Score E Sequences producing significant alignments: (Bits) Value seq17807 111 1e-20 seq36615 96.9 2e-16 seq12203 82.4 5e-12 seq186615 78.8 7e-11 >seq17807 Length=6784 Score = 111 bits (122), Expect = 1e-20 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 7009 AAACTAGGTCTGATCATCAATAATGATGAAACAATACAAAGTGCAGATTTCCTTACATAT 7068 ||||| || ||||| |||||| | |||||||| || ||||| |||| || ||| |||| Sbjct 4719 AAACTTGGACTGATTATCAATCAAGATGAAACGATGCAAAGCTCAGACTTTCTTTCATAC 4660 Query 7069 GGGAAAGTCCCAATTTTCAGGGGTAACATAAGAGGTTTAGAGACAAAAAGGTGGTCTCGG 7128 || ||||| || ||| ||| ||||| || | | | ||| | ||| | ||||| || Sbjct 4659 GGCAAAGTTCCCGTTTACAGAGGTAATATCTTACCTCTGGAGGCCAAACGCTGGTCAAGG 4600 Query 7129 GTGACTTGTGTCACAAATGATCAATTGCCATCTTTGGCCAATGT 7172 || || ||||||||||| || || | |||||||||||||| || Sbjct 4599 GTCACGTGTGTCACAAACGAACAGATCCCATCTTTGGCCAACGT 4556 >seq36615 Length=1239 Score = 96.9 bits (106), Expect = 2e-16 Identities = 356/542 (66%), Gaps = 27/542 (5%) Strand=Plus/Plus Query 6370 ATGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATATTTAATAAAACACCATTTT 6429 ||||||||| | | || |||||||||| | || || | || || || | | || Sbjct 95 ATGTCATGGAGGATGAGACAGTACTTTGTTACAACAAAACACTTCATCAAGGAGCTTTAC 154 Query 6430 GTACCTCTATT-TAAGGGATTAACAATGGCAGATGATATGACAGAAGTGATCAAAAAGAT 6488 || || ||||| | |||| || |||||||| |||||| | ||| |||||| ||| || | Sbjct 155 GTTCCCCTATTCTCAGGG-TTGACAATGGCCGATGATCTCACAAAAGTGACCAAGAAACT 213 Query 6489 GCTGGA-AAGAAG-TCAAGGCCAAGGAGAATTAGACTATCAA--CATGTGAGCATAGCGA 6544 || || || | |||| ||| || | | || || | ||| | |||| | Sbjct 214 CCTCGACAACTCGATCAA--CCAGGGCCAGGTTGATTACCGTTCCATTTCTC--TAGCCA 269 Query 6545 ACCATATAGATTATGAAAAGTGGAACAATCATCAAAGGAAAGAATCAAATGGACCAGTTT 6604 ||||| | || || || || ||||||||||||||||| ||| |||||| || || | Sbjct 270 ACCATGTTGACTACGAGAAATGGAACAATCATCAAAGAGTGGAAGCAAATGACCCTGTCT 329 Query 6605 TCCGTGTGATGGGCCAA-TTCTTGGGCTATCCATCTTTGATAGAGAGAACGCATGAGTTC 6663 || | || || | || |||| || ||| | | | | | || | | ||| Sbjct 330 TCACCATCATTGGGAAGGTTTTTGGTCTC-CCAAATGTCTTTGCACGCACTCCCGCATTC 388 Query 6664 TTTGAGAAAAGTCTTGTTTATTACAATGGTA---GACCAGACTTGATGAAGGTAGAAAAT 6720 || | |||||||||| ||||| |||| ||||||| ||||| | || | Sbjct 389 TTCCAAGAAAGTCTTGTGTATTA---TGGTCCCCGACCAGATCTGATGGAAGTTGTGGGA 445 Query 6721 GGTGTAGTATTGAATAAAACAGATAATTTAGTTTGCTGGAATGGTCAAGCAGGGGGGTTA 6780 | | ||| | || ||| | ||| || || ||| | || || || || || Sbjct 446 GATTCAGTGTGCAACAAAGGCTCTT-TTTGGTGTGTTGGGAAGGACAGCTTGGTGGATTG 504 Query 6781 GAGGGACTGAGACAAAAAGGTTGGAGTATACTCAA----CTTGTTGGTGATTAGACGTGA 6836 || ||||||||||| || ||||||||||| |||| |||||| || || ||||| Sbjct 505 GAAGGACTGAGACAGAAGGGTTGGAGTATCGTCAATCTCCTTGTTT-TGCTT---CGTGA 560 Query 6837 GTCCAAAATCCGCAATACAAGGGTTCAGACATTAGCACAGGGAGACAATCAAGTGATCTG 6896 | |||| | ||| |||||| ||| | ||| | ||||| |||||||||||| | || || Sbjct 561 GGCCAAGACCCGGAATACATTGGTCAAAACACTCGCACAAGGAGACAATCAACTCATATG 620 Query 6897 TA 6898 || Sbjct 621 TA 622 >seq12203 Length=1511 Score = 82.4 bits (90), Expect = 5e-12 Identities = 168/246 (68%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 6388 GAGTACTTTGTCATTACCGAATATTTAATAAAACACCATTTT--GTACCTCTATTTAAGG 6445 |||||||| |||||||| ||| | | || || ||| | ||||| |||||| | Sbjct 1451 GAGTACTTCGTCATTACGGAACACCTTCAGAAGCA--ATTCTACGTACCCCTATTTGGAG 1394 Query 6446 GATTAACAATGGCAGATGATATGACAGAAGTGATCAAAAAGATGCTGGAAAGAAGTCAA- 6504 | | || |||||||| | | || |||| | |||||| || |||| | | ||| Sbjct 1393 GTCTCACCATGGCAGACAACTTAACCAAAGTCACAAAAAAGCTGTTGGACA--ATTCATT 1336 Query 6505 -GGCCAAGGAGAATTAGACTATCAACATGTGAGCATAGCGAACCATATAGATTATGAAAA 6563 || ||||| || || || ||| ||| | ||| || |||||||| ||||||||||| Sbjct 1335 GGGACAAGGGCAAAACGATTACCAATCTGTTACCATCGCCAACCATATTGATTATGAAAA 1276 Query 6564 GTGGAACAATCATCAAAGGAAAGAATCAAATGGACCAGTTTTCCGTGTGATGGGCCAATT 6623 |||||||| || ||||| ||| | | | || ||| ||||||||| |||| Sbjct 1275 ATGGAACAACCAACAAAGAGGAGACGCCGACAACTCTGTGTTCACTGTGATGGGGCAATA 1216 Query 6624 CTTGGG 6629 |||||| Sbjct 1215 CTTGGG 1210 >seq186615 Length=1208 Score = 78.8 bits (86), Expect = 7e-11 Identities = 165/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 6388 GAGTACTTTGTCATTACCGAATATTTAATAAAACACCATTTTGTACCTCTATTTAAGGGA 6447 |||||||| ||| |||| ||| | | | || || | |||||| |||||| || Sbjct 61 GAGTACTTCGTCCTTACGGAACACCTTCTGAAGCAATTCTATGTACCCCTATTTGGAGGT 120 Query 6448 TTAACAATGGCAGATGATATGACAGAAGTGATCAAAAAGATGCTGGAAAGAAGTCAA--G 6505 | || |||||||| || | || |||| | |||| | || |||| | | ||| | Sbjct 121 CTCACCATGGCAGACGACTTAACCAAAGTCACAAAAAGGCTGTTGGACA--ATTCATTGG 178 Query 6506 GCCAAGGAGAATTAGACTATCAACATGTGAGCATAGCGAACCATATAGATTATGAAAAGT 6565 | |||||| || || || ||| ||| | ||| || ||||| | ||||||||||| | Sbjct 179 GACAAGGACAAAACGATTACCAATCTGTTACCATCGCCAACCACAACGATTATGAAAAAT 238 Query 6566 GGAACAATCATCAAAGGAAAGAATCAAATGGACCAGTTTTCCGTGTGATGGGCCAATTCT 6625 ||||||| || |||| ||| | | || || ||| ||||||||| | ||||| Sbjct 239 GGAACAACCACCAAAAAGGAGACGCCGACAACCCTGTGTTCACTGTGATGGGACGATTCT 298 Query 6626 TGGG 6629 |||| Sbjct 299 TGGG 302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35454238593520