Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028255.1 Length=11003 Score E Sequences producing significant alignments: (Bits) Value seq17807 154 1e-33 >seq17807 Length=6784 Score = 154 bits (170), Expect = 1e-33 Identities = 393/592 (66%), Gaps = 11/592 (2%) Strand=Plus/Minus Query 6168 ATTGGTCTCAAAGGAAAAGAGAGAGAATTGAAACTAGCCGGAAGATTCTTTTCCTTGATG 6227 || || || |||||||| ||| | ||| | || | || ||||||||||| |||||| Sbjct 5416 ATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTCTTTTCATTGATG 5357 Query 6228 TCTTGGAAATTACGTGAATATTTTGTAATCACGGAATATCTTATCAAAACACACTT-TGT 6286 || ||||| | || | ||||| |||| || | | |||| ||||| || ||| Sbjct 5356 TCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAGGAGTTTTTATGT 5297 Query 6287 CCCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaTGTT 6346 || ||||| || || || ||||| |||||||| || || | ||||| | | Sbjct 5296 GCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAAGCTTCT 5237 Query 6347 GGATACATCCTCAGGTCAAGGATTGGACA-ATTACGAGTCCATTTGTATCGCGAATCACA 6405 |||| || ||||| | || | | || |||||||||| ||||| || ||| Sbjct 5236 AGATAACTCTGTGAACCAAGG-TCGGTCTGACTATGAGTCCATTTCCATCGCCAACCACG 5178 Query 6406 TTGATTATGAGAAATGGAACAACCATCAACGCAAGGAATCCAATGGGCCTGTATTTCGTG 6465 | |||||||| || ||||| || ||||| ||| || ||||| | ||||| | Sbjct 5177 TGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACACCGTATTCAAAG 5118 Query 6466 TGATGGGACAGTTCCTAGGATACCCAAACCTGATTGAGAGGACACACGAATTCTTCGAGA 6525 |||||||||||||||||| ||| || | ||| | |||||| | || ||| ||| Sbjct 5117 TGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTGTTCGAACACACAAGTTTTTCCAGA 5058 Query 6526 AGAGCTTGATCTACTATAATGGACGTCCAGACTTAATGCAGGTCTCGGGAAATACCCTCA 6585 | || | ||||| ||| || |||||| ||||| | || ||| || |||||| Sbjct 5057 ACAGTCTCATCTATTATGGGCCTCGACCAGACCTAATGGAAGTGATCGGAGATTCCCTCA 4998 Query 6586 ----TCAACAGGTCTAATCAATTGGTCTGCTGGCAGGGACAAGCAGGAGGGCTGGAAGGC 6641 | || | | | || | ||||| ||| | || || |||||||| || ||| Sbjct 4997 GAAGTAAAGAAGCGT--TC--CTAGTCTGTTGGGAAGGTCAGCTGGGAGGGCTTGAGGGC 4942 Query 6642 CTTCGTCAGAAAGGATGGAGCATCCTGAACTTGCTAGTAATCCAAAGAGAAGCTAAAGTC 6701 || |||||||| |||||||||||| |||| | ||||| | ||||| || || | Sbjct 4941 CTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGTGTTATTGAGAGAGGCCAAGACC 4882 Query 6702 CGAAACACAGCAGTCAAGGTGTTGGCACAAGGGGATAATCAAGTGATTTGCA 6753 ||||||| || ||| |||| || || || ||||| || || |||| Sbjct 4881 AGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGGTAATCTGCA 4830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35013654629008