Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028259.1 Length=11183 Score E Sequences producing significant alignments: (Bits) Value seq185783 154 1e-33 >seq185783 Length=1760 Score = 154 bits (170), Expect = 1e-33 Identities = 525/810 (65%), Gaps = 16/810 (2%) Strand=Plus/Plus Query 1632 AAGAAAAAGAGCACAAGGTGGAACCCAGAGGATTCGGGTGCAAAACATATGAAGATCGGG 1691 ||||||| || || || | || | | |||||||| || ||| | |||| | | Sbjct 32 AAGAAAAGGAACAAAAAATCGAGGCACGGGGATTCGGATGTAAATCGACACAAGACAGAG 91 Query 1692 CTAGAGGCATTGTGCAGGAAGAAAACGTGGCAATGTTTCT---TGACCGATACTCAGACG 1748 | ||| | || | ||||| || |||||| ||| || |||| ||||| |||| Sbjct 92 CAAGAAGTATCATACAGGAGCTCAATGTGGCACGGTTCCTCAATGAC---TACTCCGACG 148 Query 1749 AGCATGTCATGACTCTAAATGAGGTCCGTGTGGCCAAAAAGCTCCTAGGTTTCAGGAATC 1808 | || || ||||| ||| ||| || | | ||||| ||||| |||| || ||| Sbjct 149 AACACGTAATGACACTAGGTGAAATCGCTCTTGCCAAGAAGCTACTAGCATTTCGGAGAT 208 Query 1809 TTGGCGCAGCATATAGCGGTTATGGGGTCCTCATAATGTCTGTTGATTCCAAAAGCTGGA 1868 | | |||||| ||||| | | | |||| | ||||| ||| | | ||||||| Sbjct 209 TACACCATGCATATCGCGGTCACAAGATGATCATCGTCTCTGTGGATGCTAGCAGCTGGA 268 Query 1869 ACAACCAGTTCAGGTCTGCTACGGTGGCCCCAGTAGCAGGCGCGGTTCTCGATCGCGTGT 1928 ||||| |||||| | || ||||||| || ||| | || || || ||| | || Sbjct 269 ACAACAGATTCAGGGCAGCCTCGGTGGCACCCGTAATGGAAGCTGTACTTGATGCTGCGT 328 Query 1929 TTGGAGTAGAACTGTTCAGTAAAACCCATACTGCATATGAAAAAGCAACTGTGTATGTAC 1988 || || | ||| ||||| || ||||| | | | | ||||| | Sbjct 329 ATGATGTTCCTATCTTCTCGAAAACGCACGAGGCATACATGAGGTCGTTTATTTATGTCC 388 Query 1989 CTGATGCTGAC-AGAGTGATTTATTGGAGCGGGCAAGATGGAGGGGTGGAGGGGCTCAAC 2047 | || || || || | | | || ||| |||||| | ||||| | || || || ||| Sbjct 389 CGGACGCAGATGAGGTTTACTCATGGGAT-GGGCAACAGGGAGGAATCGAAGGTCTAAAC 447 Query 2048 CAAGACACTTGGGTATTTGTATACATACATCAAATAAAAGTCTGTATGGAGGGCCTGCCA 2107 |||||||| ||||| || ||||| || || || ||||| || ||||||| | || Sbjct 448 CAAGACACATGGGTGTTGACTTACATCCACCAGATCAAAGTGTGCATGGAGGATCACCCT 507 Query 2108 TACCCTTACTTCATCCTTTGCAAAGGAGATGATCTTCGTATTGCG---ATGATGATTCCC 2164 ||||| |||| ||| || ||||| |||||||||||||| || ||| ||| || ||| Sbjct 508 TACCCATACTACATACTCTGCAAGGGAGATGATCTTCGGATAGCGGTAATGGTGCCACCC 567 Query 2165 CCTGAGGTCCTTAAAACGACATCTCTGGACAAAATCAAGC-GTGACTCCATCAGCCACAT 2223 ||| | ||| || ||| || || |||||| | || | || | | | Sbjct 568 TCTGCACTGACTAACACTACA---CTAGATGCCCTCAAGCAACGTCTTCTAGAGTC-CGT 623 Query 2224 TGCAGAACGCGGAGCTGCATTCGGCCATGTAATTAAAGTTGAAGATTCTTATGTCTCGGA 2283 ||| ||| || | | | || |||||||| || || |||| || |||| ||| || Sbjct 624 CTCAGCACGGGGTGAAAAACTTGGACATGTAATCAAGGTAAAAGACTCATATGCCTCTGA 683 Query 2284 AAACTACTTTGCGTATTCTAAGGATGCCTATGTGGCTGGTGTTGAGCAACCCCAATCTTA 2343 | ||| ||||| || ||| ||||| | |||| | ||| ||||| || || | | Sbjct 684 ATGCTATTTTGCCTACAGTAAAGATGCATTTGTGAGAGATGTGGAGCAGCCGCAGACATT 743 Query 2344 CAGAAAGGTTCAAAAGTGCTATGGCGCCAATAACGCATTCTTAACCACATTGGATGACTA 2403 ||| ||| | || || ||||| || || || || || || ||| | |||||||| Sbjct 744 CAGGAAGATCCAGAAATGCTACGGTGCAAACAATGCGTTTACTACCGTACCCGATGACTA 803 Query 2404 CATTGCCTCTGCATTCAGCAATGCACACAG 2433 | ||| ||||||||||||||| ||||| Sbjct 804 TGTGGCCAGTGCATTCAGCAATGCGCACAG 833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35588329365328