Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028260.1 Length=10877 Score E Sequences producing significant alignments: (Bits) Value seq185783 253 1e-63 >seq185783 Length=1760 Score = 253 bits (280), Expect = 1e-63 Identities = 552/817 (68%), Gaps = 12/817 (1%) Strand=Plus/Plus Query 1619 AAGAGAAAGAGCACAAGATTGAATCTCGCGGGTTCGGATGCAAAACCCCAATGGACCGTG 1678 |||| || || || || || || | || || |||||||| ||| | || ||| | | Sbjct 32 AAGAAAAGGAACAAAAAATCGAGGCACGGGGATTCGGATGTAAATCGACACAAGACAGAG 91 Query 1679 CTCGAGGAATTATTCAGGAGGAGAATGCTGCTCGTTTCCTTGACAAGTACTCTGACGAGC 1738 | || | || || |||||| |||| || || ||||| | | ||||| ||||| | Sbjct 92 CAAGAAGTATCATACAGGAGCTCAATGTGGCACGGTTCCTCAATGACTACTCCGACGAAC 151 Query 1739 ATGTTATGACGCTTGGAGAGATAACTCTGGCCAAGAAACTCCTAGGGTTCCGTCAGCTAG 1798 | || ||||| || || || || |||| |||||||| || |||| || || || Sbjct 152 ACGTAATGACACTAGGTGAAATCGCTCTTGCCAAGAAGCTACTAGCATTTCGGAGATTAC 211 Query 1799 GGAAAGCTTACCAGGGGTACAC-ATG-TCTTACGATGTCTGTAGACTCGAGCAGCTGGAA 1856 | || || | || ||| ||| || | || | ||||| || | ||||||||||| Sbjct 212 ACCATGCATATCGCGGTCACAAGATGATCAT-CG-TCTCTGTGGATGCTAGCAGCTGGAA 269 Query 1857 CAACAGGTTTCGCTCCCAGGCCGTGGCCCCCGTAGCAGAGGCAGTGTTGGACGCGTCCTA 1916 |||||| || | | | ||||| |||||| || || || | || || | || Sbjct 270 CAACAGATTCAGGGCAGCCTCGGTGGCACCCGTAATGGAAGCTGTACTTGATGCTGCGTA 329 Query 1917 TGGTGTGAAAATCTTCAAGAAAACTCACACTGCATATGAGCGCTCATTCATCTACATGCC 1976 || ||| |||||| |||||| ||| ||||| | | || || || || | || Sbjct 330 TGATGTTCCTATCTTCTCGAAAACGCACGAGGCATACATGAGGTCGTTTATTTATGTCCC 389 Query 1977 AGATGCGGATCAGGTTTACTCCTGGGATGGGCAACTTGGCGGAATAGAAGGGTTGAACCA 2036 || || ||| |||||||||| ||||||||||||| || ||||| ||||| | ||||| Sbjct 390 GGACGCAGATGAGGTTTACTCATGGGATGGGCAACAGGGAGGAATCGAAGGTCTAAACCA 449 Query 2037 GGACACGTGGGTCTATGTGTATCTACAGCAGATGAAAGTCTGCATGGAGGGCCTTCCTTA 2096 ||||| ||||| | || | || ||||| ||||| |||||||||| | ||||| Sbjct 450 AGACACATGGGTGTTGACTTACATCCACCAGATCAAAGTGTGCATGGAGGATCACCCTTA 509 Query 2097 CCCCTACTACCTTTTGTGCAAAGGCGATGATCTGCGCGTGGCAATTATGGTACCTCCTGA 2156 ||| |||||| | | ||||| || |||||||| || | || | ||||| || || Sbjct 510 CCCATACTACATACTCTGCAAGGGAGATGATCTTCGGATAGCGGTAATGGTGCCACCCTC 569 Query 2157 GGTTCGTGA-GAAGAAATCCTTAGATGTCATAAAGCAAGAAGTGTTAGCGCATGTCTCGG 2215 | | ||| || | | |||||| | | |||||| | ||| | ||||| | Sbjct 570 TGCAC-TGACTAACACTACACTAGATGCCCTCAAGCAACGTCTTCTAGAGTCCGTCTCAG 628 Query 2216 AGCGGGGAAAGCTATTCGGGCATGTCATTAAGGTGGAGGACTCTTACGTGTCCGAATGCT 2275 ||||| | | | || ||||| || ||||| | ||||| || | || ||||||| Sbjct 629 CACGGGGTGAAAAACTTGGACATGTAATCAAGGTAAAAGACTCATATGCCTCTGAATGCT 688 Query 2276 ACTTTGCTTACTCCAAAGACGCCTATGTTGCAGGAGTAGAGCAGCCTCAGACGTTCAGAA 2335 | ||||| ||| ||||| || | ||| || || |||||||| ||||| ||||| | Sbjct 689 ATTTTGCCTACAGTAAAGATGCATTTGTGAGAGATGTGGAGCAGCCGCAGACATTCAGGA 748 Query 2336 AAATCCAGAAATGCTACGGAGCAAACAACGCATTTCTTACCACGGTA---GACGATTATA 2392 | ||||||||||||||||| |||||||| || | |||| || ||| || || ||| Sbjct 749 AGATCCAGAAATGCTACGGTGCAAACAATGCGT---TTACTACCGTACCCGATGACTATG 805 Query 2393 TCGCAAGCTCTTTTAGCAATGCTCATAGCGCATCTAA 2429 | || || | || |||||||| || || || || || Sbjct 806 TGGCCAGTGCATTCAGCAATGCGCACAGTGCCTCAAA 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34611382313584