Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028261.1 Length=9527 Score E Sequences producing significant alignments: (Bits) Value seq185783 140 2e-29 >seq185783 Length=1760 Score = 140 bits (154), Expect = 2e-29 Identities = 446/672 (66%), Gaps = 36/672 (5%) Strand=Plus/Plus Query 2077 GAGGTGTA-TCACTGGGATGGCCAATTAGGTGGTATAGAGGGGCTGAACCAATATACATG 2135 ||||| || ||| |||||||| ||| || || || || || || |||||| | ||||| Sbjct 400 GAGGTTTACTCA-TGGGATGGGCAACAGGGAGGAATCGAAGGTCTAAACCAAGACACATG 458 Query 2136 GGTTGACACTTACATAAACCAGGTCAAGGTGTGCATGGAACCATACAATTTTCCCTACCA 2195 ||| |||||||| ||||| |||| ||||||||||| || || || ||| | Sbjct 459 GGTGTTGACTTACATCCACCAGATCAAAGTGTGCATGGAGGATCACCCTTACCCATACTA 518 Query 2196 CATCCTGTGCAGAGGGGATGA-CTTAAGAGTTGTCATAATGGTTCCCCCTAAGGCTGTGA 2254 ||| || |||| || ||||| ||| || | | ||||||| || || || ||| Sbjct 519 CATACTCTGCAAGGGAGATGATCTTCGGA-TAGCGGTAATGGTGCCACCCTCTGCACTGA 577 Query 2255 GGGAACAGGGCTTGGACAAGAT-----CAA--AAAGTCTATTCTC---TCACGGTTTGCC 2304 |||| | || |||| ||| || |||| ||| || || | | Sbjct 578 CT-AACACTAC----ACTAGATGCCCTCAAGCAACGTCT--TCTAGAGTC-CGTCTCAGC 629 Query 2305 ATGGATGGAATGACATTCGGCCATAAGATCAAGGAGGAGGACTCTTACGCATCTGAATGC 2364 | || ||| || | || ||| ||||||| | ||||| || || ||||||||| Sbjct 630 ACGGGGTGAAAAACTT--GGACATGTAATCAAGGTAAAAGACTCATATGCCTCTGAATGC 687 Query 2365 TACTTTGCCTTCTCTAAGAACGCTTTCGTGCATGATGTCGAGCAACCTCAAACATTTAGG 2424 || ||||||| | ||| | || || ||| ||||| ||||| || || ||||| ||| Sbjct 688 TATTTTGCCTACAGTAAAGATGCATTTGTGAGAGATGTGGAGCAGCCGCAGACATTCAGG 747 Query 2425 AAGATTCAGAAAGCATATGGAGCTAACAATGCATTT-CTAAAGACACCAGATGATTATGT 2483 ||||| |||||| || || || |||||||| ||| ||| | ||| ||||| ||||| Sbjct 748 AAGATCCAGAAATGCTACGGTGCAAACAATGCGTTTACTACCG-TACCCGATGACTATGT 806 Query 2484 AGCCAGTGCATTTAGCAACTGTCACAGCGCCTCTAAGACATCTCCGACTCCTGTAGCGTG 2543 ||||||||||| ||||| ||||| ||||| || ||||| || | || ||| | || Sbjct 807 GGCCAGTGCATTCAGCAATGCGCACAGTGCCTCAAAAACATCACCATCACCGGTACCATG 866 Query 2544 TTACTCTGTTGCCTGT-TTGTGGGCAGCGGAGTATTTAACT--CA--CCACGAAGACTAT 2598 |||| | | || ||| || ||| | | || | || || |||| || || Sbjct 867 TTACGCCG-TGGGTGTCTTTTGGTC----GTGTGATCTGCTGGCAAGGCACGCAGTATAC 921 Query 2599 GTCAAACTGAGTGATCATGAGTTAACTGCATTGCTTCAAACTCCCAACATTATGGGTGGG 2658 || | || ||| ||| | |||| | || ||| || ||| | |||| || Sbjct 922 TCCACATTGTCCGATGTGGAGATCACTGGGCTACTCCAAGTGCCAAACCTCTTGGGAGGA 981 Query 2659 TTCCCTGTGATTTACCTGCACAATTTCTTTGTTAGAGCCGAATCAGACTTATTGCCTCCC 2718 || || | || ||||||||||| |||||| ||||| || |||||| || | ||||| Sbjct 982 TTTCCCATCATATACCTGCACAACTTCTTTACGAGAGCAGAGTCAGACCTACTTCCTCCT 1041 Query 2719 TTCCTTCACCTG 2730 | | || | ||| Sbjct 1042 TACATTGATCTG 1053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30301321791184