Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028264.1 Length=10017 Score E Sequences producing significant alignments: (Bits) Value seq185783 102 5e-18 >seq185783 Length=1760 Score = 102 bits (112), Expect = 5e-18 Identities = 326/497 (66%), Gaps = 18/497 (4%) Strand=Plus/Plus Query 2076 CCAGACGAAGGTCAAGTGTACTACTGGGATGGTCAGATGGGAGGAATCGAAGGTCTCAAT 2135 || |||| || | | || |||| |||||||| || |||||||||||||||||| || Sbjct 388 CCGGACGCAGATGAGGTTTACTCATGGGATGGGCAACAGGGAGGAATCGAAGGTCTAAAC 447 Query 2136 CAATATACGTGGGTCGACACATATATCAACCAGGTTAAGGTGTGTATGGAGCCATATAAT 2195 ||| | || ||||| || || ||| ||||| | || ||||| |||||| | | Sbjct 448 CAAGACACATGGGTGTTGACTTACATCCACCAGATCAAAGTGTGCATGGAGGATCACCCT 507 Query 2196 TTTCCCTACCATATATTGTGTCGTGGTGACGATCTTCG---AGTGGTAATTATGGTTCCT 2252 | || ||| | ||| | || || || |||||||| || |||||| ||| || Sbjct 508 TACCCATACTACATACTCTGCAAGGGAGATGATCTTCGGATAGCGGTAAT---GGTGCCA 564 Query 2253 CCAAAAGCAGTGAGAGAACAGGGGT-TAGATAATATCAAGAA--GTCTATTCTCTCGCGT 2309 || ||| ||| |||| ||||| ||||| | |||| ||| | || Sbjct 565 CCCTCTGCACTGACT-AACACTACACTAGATGCCCTCAAGCAACGTCT----TCTAGAGT 619 Query 2310 TTTGCGATGGACGGCATGTCGT--TTGGCCATAAGATTAAAGAGGAGGATTCATATGCCT 2367 | | |||| || |||| ||| || || | | || |||||||||| Sbjct 620 CCGTCTCAGCACGGGGTGAAAAACTTGGACATGTAATCAAGGTAAAAGACTCATATGCCT 679 Query 2368 CTGAATGTTATTTTGCATTTTCCAAGAATGCCTTTGTCCATGATGTTGAGCAGCCTCAAA 2427 ||||||| |||||||| | || |||| ||||| ||||| |||||||| || | Sbjct 680 CTGAATGCTATTTTGCCTACAGTAAAGATGCATTTGTGAGAGATGTGGAGCAGCCGCAGA 739 Query 2428 CACTTCGAAAGATCCA-AAAGGCTTATGGAGCTAACAACGCTTTTCTGAAAACTCCTGAT 2486 || | | |||||||| ||| || || || || ||||| || ||| | || ||| Sbjct 740 CATTCAGGAAGATCCAGAAATGC-TACGGTGCAAACAATGCGTTTACTACCGTACCCGAT 798 Query 2487 GATTATGTAGCTAGTGCATACAGCAACTGTCATAGTGCAGCGAAGACTTCACCAACACCC 2546 || ||||| || ||||||| |||||| || ||||| | || || |||||| |||| Sbjct 799 GACTATGTGGCCAGTGCATTCAGCAATGCGCACAGTGCCTCAAAAACATCACCATCACCG 858 Query 2547 ATCGCCTGTTATGCTGT 2563 | | ||||| || || Sbjct 859 GTACCATGTTACGCCGT 875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31865714128944