Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028266.1 Length=11395 Score E Sequences producing significant alignments: (Bits) Value seq185783 165 6e-37 >seq185783 Length=1760 Score = 165 bits (182), Expect = 6e-37 Identities = 672/1045 (64%), Gaps = 42/1045 (4%) Strand=Plus/Plus Query 1654 AAGAGAAGGAACACAAAATAGCAGCTAGGGCTTTTGGAGCAAAAACTGCCCAAGACCGTG 1713 |||| |||||||| ||||| | || ||| || ||| ||| | | |||||| | | Sbjct 32 AAGAAAAGGAACAAAAAATCGAGGCACGGGGATTCGGATGTAAATCGACACAAGACAGAG 91 Query 1714 CACGAAGCATCATACAGGAATTAAATGTAGCGAAGTTTCTTGACAAGTACTCAGACGAAC 1773 || |||| ||||||||||| | ||||| || ||| || | | ||||| ||||||| Sbjct 92 CAAGAAGTATCATACAGGAGCTCAATGTGGCACGGTTCCTCAATGACTACTCCGACGAAC 151 Query 1774 ATGTAATGACCCAGGGAGAGTTAGATGTAGCCCGTAAACTCTTGGGATTTCGTATGCTCA 1833 | |||||||| | || || | | | | ||| || || | | |||||| | | Sbjct 152 ACGTAATGACACTAGGTGAAATCGCTCTTGCCAAGAAGCTACTAGCATTTCGGAGATTAC 211 Query 1834 AACATGCTTACCAAGGCCATACTATGCTTATCATTCAGGTAGATGCGAGCTCATGGAACA 1893 | ||||| || | || || | ||| | ||| | || ||||| ||| ||||||| Sbjct 212 ACCATGCATATCGCGGTCACAAGATGATCATCGTCTCTGTGGATGCTAGCAGCTGGAACA 271 Query 1894 GCAGGTTTCGGCATGCCTCAGTAGCCCCCATCGCACAGAAA--GTACTGGACAGTGTTTA 1951 ||| || || ||||| || || ||| | | ||| ||||| || || || Sbjct 272 ACAGATTCAGGGCAGCCTCGGTGGCACCCGTA--ATGGAAGCTGTACTTGATGCTGCGTA 329 Query 1952 TGATGTAGAGATATTTTCTAAAACGCAGACAGGATTTGAAATGTCTTTCATATACATGCC 2011 |||||| || || || |||||||| | || | ||| || || || | || Sbjct 330 TGATGTTCCTATCTTCTCGAAAACGCACGAGGCATACATGAGGTCGTTTATTTATGTCCC 389 Query 2012 TGACATTGCCCAGAACAGGAAG-----TGGCAAGGCCAATTAGGCGGCATCGAGGGTCTT 2066 ||| |||| ||| ||| | || ||| || || ||||| ||||| Sbjct 390 GGACG-----CAGATGAGGTTTACTCATGGGATGGGCAACAGGGAGGAATCGAAGGTCTA 444 Query 2067 CAGCAGTACACTTGGGTATTCGTATATATCCATCAGATCAAAGTGTGCATGGAGGAACAT 2126 | || |||| ||||| || || ||||| ||||||||||||||||||||||| || Sbjct 445 AACCAAGACACATGGGTGTTGACTTACATCCACCAGATCAAAGTGTGCATGGAGGATCAC 504 Query 2127 CCTTACCCATTTTTTATCCTGTGTAAGGGTGATGACTTAAGGATTGCTGTTATGGTACCT 2186 |||||||||| | || || || ||||| ||||| | |||| || || ||||| || Sbjct 505 CCTTACCCATACTACATACTCTGCAAGGGAGATGATCTTCGGATAGCGGTAATGGTGCCA 564 Query 2187 CCACTAGTTTTGGAGCGCACTAGCATCGATTCCCTTAAGAAGACGATCCTAACTAGCCTA 2246 || | || ||||| | ||| |||| ||| | ||| || | || | Sbjct 565 CCCTCTGCACTGACTAACACTACACTAGATGCCCTCAAGCA-ACG-TCTTCTAGAGTCCG 622 Query 2247 TCGGAGCAAG------CAACCTTGATGGGGCATGTTCTGAAAGTTGAGGACTCTTACGCC 2300 || |||| | || ||| || ||||| | || || | ||||| || ||| Sbjct 623 TCTCAGCACGGGGTGAAAAACTT----GGACATGTAATCAAGGTAAAAGACTCATATGCC 678 Query 2301 TCAGAGTGTTACTTCGCTTACTCCAAAAATACATTTATCAATGACGTTGAAATGCCACAA 2360 || || || || || || ||| ||| || ||||| | | || || || ||| || Sbjct 679 TCTGAATGCTATTTTGCCTACAGTAAAGATGCATTTGTGAGAGATGTGGAGCAGCCGCAG 738 Query 2361 ACCTATCGAAAAATACAAAAATGTCATGGGGCAAATAATGCCTTTATGA--GTACTATCG 2418 || | | || || || ||||| | || ||||| ||||| |||| | |||| || Sbjct 739 ACATTCAGGAAGATCCAGAAATGCTACGGTGCAAACAATGCGTTTACTACCGTAC--CCG 796 Query 2419 ATGACTACATAGGCACAGTCTTCTCAAATGCCCACAGTGCATCCAAAACATCCCCTTCTC 2478 ||||||| | | || | ||| ||||| |||||||| || |||||||| || || | Sbjct 797 ATGACTATGTGGCCAGTGCATTCAGCAATGCGCACAGTGCCTCAAAAACATCACCATCAC 856 Query 2479 C--TATCAGTTGCTACCTTGTGGCTATATTTTGGAGCGTGACACATCTTCTCG-AGCGCA 2535 | || || || ||| |||| | | |||||| |||| |||| || | | ||| Sbjct 857 CGGTACCA--TGTTACGCCGTGGGTGTCTTTTGG-TCGTG--TGATCTGCTGGCAAGGCA 911 Query 2536 AGGACTA---TCAAGTGTTGACTGAGGTAGAGATGGCGGCTCTGTTACAGGTCCCGAATT 2592 | | || || | ||| | || || ||||| | | || | || || || || Sbjct 912 CGCAGTATACTCCA-CATTGTCCGATGTGGAGATCACTGGGCTACTCCAAGTGCCAAACC 970 Query 2593 TGTTAGGGGGTTTTCCGATTATATTCCTACACAACTTCTTTGTTCGAGCGGAGTCTGACC 2652 | || || || ||||| || |||| ||| |||||||||||| |||| ||||| |||| Sbjct 971 TCTTGGGAGGATTTCCCATCATATACCTGCACAACTTCTTTACGAGAGCAGAGTCAGACC 1030 Query 2653 TCCTGCCGCCTTTCTTGGAACTGTG 2677 | || || |||| | | || ||||| Sbjct 1031 TACTTCCTCCTTACATTGATCTGTG 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36265168499216