Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_031079.1 Length=11843 Score E Sequences producing significant alignments: (Bits) Value seq17807 201 9e-48 seq59107 95.1 9e-16 >seq17807 Length=6784 Score = 201 bits (222), Expect = 9e-48 Identities = 405/593 (68%), Gaps = 17/593 (3%) Strand=Plus/Minus Query 6775 ATCGGGTTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAGGTTCTTCGCACTCATG 6834 |||||| |||| || ||||| |||| || ||| || | || || ||||| || | ||| Sbjct 5416 ATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTCTTTTCATTGATG 5357 Query 6835 TCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATTAAAATGTTCT-ATGT 6893 || ||| ||||||| |||| || ||| | |||| | |||| || || ||| | |||| Sbjct 5356 TCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAGGAGTTTTTATGT 5297 Query 6894 CCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTCACCAAAAAGATCCT 6953 || ||||| ||||| || |||||||||||||| | | || || |||||| | || Sbjct 5296 GCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAAGCTTCT 5237 Query 6954 TGGGTGCACCTTCGGTCAAGGGCTTGCAGGGTAC-ACTGCAGTTACATTCACTAACCACC 7012 | | | | ||||| | | | || | | || || ||| | | |||||| Sbjct 5236 AGATAACTCTGTGAACCAAGGTCGGTCTGACTATGAGTCCATTTCCAT-CGCCAACCACG 5178 Query 7013 TAGATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCACTGACCCGGTTTTCAGAG 7072 | ||||| ||||||||||| || |||||| | ||| || |||| | || |||| || Sbjct 5177 TGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACACCGTATTCAAAG 5118 Query 7073 TGATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCACCCACGAGTTCTTCCAGA 7132 ||||||| |||||| | | || ||| | | ||||| || || ||| |||| ||||||| Sbjct 5117 TGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTGTTCGAACACACAAGTTTTTCCAGA 5058 Query 7133 AGAGTCTGATCTATTACGGAGAAAGACCAGACCTGATGCAAGTGGTGGACGGAAAAGTT- 7191 | ||||| |||||||| || |||||||||| ||| ||||| | |||| | || Sbjct 5057 ACAGTCTCATCTATTATGGGCCTCGACCAGACCTAATGGAAGTGAT---CGGAGA--TTC 5003 Query 7192 --TCA----TCCATCGGCGATACTATGGTGGCATGGGAAGGACAAGAAGGAGGGTTGGAG 7245 ||| | | ||| | ||| || |||||||| || |||||| | ||| Sbjct 5002 CCTCAGAAGTAAAGAAGCGTTCCTA--GTCTGTTGGGAAGGTCAGCTGGGAGGGCTTGAG 4945 Query 7246 GGGTTGAGACAAAAGGGATGGAGTGTCCTTAACCTCTTAGTCATTCTCCGGGAGGCACTG 7305 || | | || ||||||||||| || | || ||| |||| | | | ||||| | Sbjct 4944 GGCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGTGTTATTGAGAGAGGCCAAG 4885 Query 7306 ATCAGAAACACCCAGGTTCTGACCCTTGCTCAGGGAGACAACCAAGTAATCTG 7358 | ||||||||| ||| |||||| || ||||| ||||| || |||||||| Sbjct 4884 ACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGGTAATCTG 4832 >seq59107 Length=3405 Score = 95.1 bits (104), Expect = 9e-16 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 7000 TTCACTAACCACCTAGATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCACTGAC 7059 ||| | |||||| |||| ||||||||||||||||| || || || | || | || Sbjct 989 TTCTCAAACCACATAGACTACGAAAAGTGGAACAATCAACAACAGCCCGCAGCGAACAAC 930 Query 7060 CCGGTTTTCAGAGTGATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCACCCAC 7119 | |||||| |||| ||||| || ||||| || | || || | || | |||||| Sbjct 929 ACAGTTTTCTGAGTTATGGGACAATTCTTGGGGTTACCAGAACCCTTGACAAGGACCCAC 870 Query 7120 GAGTTCTTCCAGAAGAGTCTGATCTATTACGGAGAAAGACCAGACCTGAT 7169 |||||||| ||||| || |||||||| || || ||||||||| || || Sbjct 869 GAGTTCTTTCAGAACAGCCTGATCTACTATGGCCCAAGACCAGATCTAAT 820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37695470065168