Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_031278.1 Length=12247 Score E Sequences producing significant alignments: (Bits) Value seq17807 86.0 5e-13 >seq17807 Length=6784 Score = 86.0 bits (94), Expect = 5e-13 Identities = 391/609 (64%), Gaps = 32/609 (5%) Strand=Plus/Minus Query 7344 GGCCGATTCTTTTCTCTGATGTCCTGGGATTTACGAGATTATTTTGTTATAACGGAGTAT 7403 ||| |||||||||| ||||||| ||| | | || | ||||| || | ||| | || Sbjct 5377 GGCAGATTCTTTTCATTGATGTCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACAT 5318 Query 7404 CTGATTAAAACCCATTT-TGTTCCCCTCTTTTATGGACTGACAATGGCTGATGATATGAC 7462 ||||| || ||| ||| || || || | || || |||||||| |||||| | || Sbjct 5317 CTGATCAAGGAGTTTTTATGTGCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCAC 5258 Query 7463 AACAGTAGTACGCAAGA--TGATGGAAAACACCAGTGGACAGGGTTCTGA-TGATTATGA 7519 | ||| |||| || | | | || ||| | ||| || | || | ||| ||||| Sbjct 5257 CAAAGT--TACGAAAAAGCTTCTAGATAACTCT-GTGAACCAAGGTCGGTCTGACTATGA 5201 Query 7520 GCACATAGGAATTGCCAATCACTTGGATTATGAAAAGTGGAATAATCACCA-----AAGA 7574 | ||| || ||||| ||| ||||||||||||||||||||||||| || || Sbjct 5200 GTCCATTTCCATCGCCAACCACGTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGA 5141 Query 7575 TACCAATCTACAGAACCTGTATTCACAGTCATGGGCAAATTCCTCGGATATCCGAATTTA 7634 | |||| || | ||||||| ||| ||||| | ||||| | || ||| | Sbjct 5140 GAGCAAT-----GACACCGTATTCAAAGTGATGGGACAGTTCCTAGACCTCCCTAATGTC 5086 Query 7635 ATTGCGAGAACTCATGAGTTCTTCGAGAAAAGCTTCATTTACCACGGCGGTAGAGCAGAC 7694 ||| |||| || |||| ||| |||| || |||| || | || | || ||||| Sbjct 5085 TTTGTTCGAACACACAAGTTTTTCCAGAACAGTCTCATCTATTATGGGCCTCGACCAGAC 5026 Query 7695 TTAATGAA---GATCTCCAACGGCAACA-TAGTTAACAAGGATCCCAGTAAGATGGTATG 7750 ||||| | |||| | | || ||| || ||| | || | || || Sbjct 5025 CTAATGGAAGTGATCGGAGATTCCCTCAGAAGTAAAGAAGCGTTCC-------TAGTCTG 4973 Query 7751 CTGGCAGGGCCAGAAGGGCGGATTGGAAGGACTTCGACAAAAGGGGTGGAGCATATTGAA 7810 ||| | || ||| ||| || | || || || || || ||||| |||||||| |||| Sbjct 4972 TTGGGAAGGTCAGCTGGGAGGGCTTGAGGGCCTCCGTCAGAAGGGATGGAGCATCGTGAA 4913 Query 7811 TCTATTAGTCATTCGAAGGGAAGGACAAGACCGGAACACCCGAATCCGATG--CTTAGCT 7868 ||| |||| | || | ||| ||||||| ||| || | || | | | || Sbjct 4912 TCTCCTAGTGTTATTGAGAG-AGGCCAAGACCAGAA-ACACTTTGGTGAAGACCCTGGCC 4855 Query 7869 CAAGGAGATAATCAGGTTATCTGTACACAATATAAACTTCAAAAATTTCGAACTGAAGAG 7928 || || || |||||||| ||||| | |||||||| | |||| ||| ||| Sbjct 4854 CAGGGCGACAATCAGGTAATCTGCAACTCGTATAAACTCCCGAAATCAACAACCCAAGCT 4795 Query 7929 GAGCTGAAA 7937 ||||||||| Sbjct 4794 GAGCTGAAA 4786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38985295584464