Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_031282.1 Length=12651 Score E Sequences producing significant alignments: (Bits) Value seq17807 152 4e-33 >seq17807 Length=6784 Score = 152 bits (168), Expect = 4e-33 Identities = 560/862 (65%), Gaps = 20/862 (2%) Strand=Plus/Minus Query 7755 AAAGGAGAAAGAGCGAGAAATCAAGAAAGACGGGAGATTCTTCTCTCTTATGTCGTGGCA 7814 |||||| || ||||| ||||| ||| | || || |||||||| || | ||||| ||| | Sbjct 5407 AAAGGA-AAGGAGCGGGAAATTAAGGAGGAGGGCAGATTCTTTTCATTGATGTCATGGAA 5349 Query 7815 ACTCAGGGATTACTTTGTAATAACCGAATATTTGATCAAGCAACACTT-TGTCCCATTAT 7873 || | | || || |||| ||| | | || |||||||| | || ||| ||| | | Sbjct 5348 CCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAGGAGTTTTTATGTGCCACTGT 5289 Query 7874 TCGACGGTTTGACTATGGCAGATGATCTCACGACTGTTATCAAGAAAATGATGGACAACG 7933 || |||| | || ||||| ||||||||||| | |||| || || | | || ||| Sbjct 5288 TCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAAGCTTCTAGATAACT 5229 Query 7934 CAAATGGTCAAGGATTAGATACCTATGATTATATATCCATAGCCAATCATATAGATTATG 7993 | ||||| | |||||| | || ||||| ||||| || | ||||||| Sbjct 5228 CTGTGAACCAAGGTCGGTCTGACTATGAGTCCATTTCCATCGCCAACCACGTGGATTATG 5169 Query 7994 AAAAGTGGAATAATCATCAGAGGAAAGAATCCACTACCCCAGTATTTAAGGTAATGGGTC 8053 |||||||||||||||||||| | || || | | | ||||| || || ||||| | Sbjct 5168 AAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACACCGTATTCAAAGTGATGGGAC 5109 Query 8054 AATTCCTAGGTTACCCTAACCTTATTAGCCGAACTCACGAATTCTTCGAAAGGAGTTTAA 8113 | ||||||| |||||| | || ||||| ||| | || ||| | | ||| | | Sbjct 5108 AGTTCCTAGACCTCCCTAATGTCTTTGTTCGAACACACAAGTTTTTCCAGAACAGTCTCA 5049 Query 8114 TTTACCATGGCGGGAGAACAGACCTAATG--AG-GATC-GTCAATGGTGAAGTAGAAAAT 8169 | || |||| || ||||||||||| || |||| | | | || || ||| Sbjct 5048 TCTATTATGGGCCTCGACCAGACCTAATGGAAGTGATCGGAGATTCCCTCAGAAGTAAAG 4989 Query 8170 AATTCGGATATCCGAGTATGTTGGAATGGACAGAAAGGAGGTCTGGAAGGATTGAGACAG 8229 || | ||| ||| |||||| | || ||| ||||| || || || | | ||| Sbjct 4988 AA----GCGTTCCTAGTCTGTTGGGAAGGTCAGCTGGGAGGGCTTGAGGGCCTCCGTCAG 4933 Query 8230 AAAGGTTGGAGCATTCTAAACCTTCTACTGATTAAAAGAGAAGGGTCA--TCCAGAAACA 8287 || || |||||||| | || || ||| || | | |||| || || ||||||||| Sbjct 4932 AAGGGATGGAGCATCGTGAATCTCCTAGTG--TTATTGAGAGAGGCCAAGACCAGAAACA 4875 Query 8288 CATCTATCAAAACTTTAGCTCAAGGGGATAATCAAGTCATCTGCACCCAGTATCGTCTAC 8347 | | | || || | || || || || ||||| || ||||||| | |||| || | Sbjct 4874 CTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGGTAATCTGCAACTCGTATAAACTCC 4815 Query 8348 AGAAATACAGAACACAAGAAGAAATGGTCGAAAGAATCCAAAAAATTGTTCAAAATAA-T 8406 ||||| | ||| |||| || || | ||||| | || | | || || || | Sbjct 4814 CGAAATCAACAACCCAAGCTGAGCTGAAAGCTCGAATCGACGAAGTGATGCAGAACAACT 4755 Query 8407 CAAGCAATCATATCAAATATTGAAAACGGTACCAGGAGA--TTGGGCTTAATAATCAACA 8464 | | | ||||| | | | ||||| || | | |||| | | || ||||| Sbjct 4754 CCATC-ATCATGGAAGCAGTAGCTCGCGGTA-TAGAAAAACTTGGAC-TGATTATCAATC 4698 Query 8465 AAGACGAAACAATGCAGTCAGCAGACTTTTTGAGTTATGGTAAAGTTCCCGTATTCAGAG 8524 |||| ||||| ||||| |||||||| | || || ||||||||||| | ||||| Sbjct 4697 AAGATGAAACGATGCAAAGCTCAGACTTTCTTTCATACGGCAAAGTTCCCGTTTACAGAG 4638 Query 8525 GAACCATTCGGAATCTTGAAACTAAACGTTGGTCCAGAGTCATGTGCACTACAAACGATC 8584 | | || ||| || | ||||| ||||| || |||| ||| |||||||| | Sbjct 4637 GTAATATCTTACCTCTGGAGGCCAAACGCTGGTCAAGGGTCACGTGTGTCACAAACGAAC 4578 Query 8585 AGATTCCAACTCAAGCCAATGT 8606 |||| ||| || ||||| || Sbjct 4577 AGATCCCATCTTTGGCCAACGT 4556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40275121103760