Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_031301.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq36615 136 3e-28 seq70391 107 1e-19 >seq36615 Length=1239 Score = 136 bits (150), Expect = 3e-28 Identities = 304/446 (68%), Gaps = 19/446 (4%) Strand=Plus/Plus Query 6334 AATGTCATGGATGTTGCGAGAATATTTTGTGATAACAGAATATTTAATCAAGGAGAATTA 6393 ||||||||||| | || || | || ||||| | |||| || | || ||||||||| ||| Sbjct 94 AATGTCATGGAGGATGAGACAGTACTTTGTTACAACAAAACACTTCATCAAGGAGCTTTA 153 Query 6394 CGTTCCTCTGTTTAGTGGATTGACAATGGCTGATGATTTGACAACTGTCATATCAAAATT 6453 |||||| || || || ||||||||||| |||||| | |||| || | ||| | Sbjct 154 CGTTCCCCTATTCTCAGGGTTGACAATGGCCGATGATCTCACAAAAGTGACCAAGAAACT 213 Query 6454 GTTAGATAGGAGTC-AGGGACAAGGT---GGTAAAGATTACACTAATATTTGTATCGCAA 6509 | || | | || | || ||| ||| |||||| | |||| | | || | Sbjct 214 CCTCGACA--ACTCGATCAACCAGGGCCAGGTT--GATTACCGTTCCATTTCTCTAGCCA 269 Query 6510 ATCATATTGACTATGAGAAATGGAACAACCATCAAAGAAAAGCTGCAACTGATCCAGTTT 6569 | ||| ||||||| |||||||||||||| ||||||||| | |||| ||| || || | Sbjct 270 ACCATGTTGACTACGAGAAATGGAACAATCATCAAAGAGTGGAAGCAAATGACCCTGTCT 329 Query 6570 TCAAGGTCATGGGAGAGTTCTTAGGATATCCCAACT-TATTCACAAGAACTCACGAATTC 6628 ||| |||| || || | || || | |||||| | | || || | |||| || |||| Sbjct 330 TCACCATCATTGGGAAGGTTTTTGG-TCTCCCAAATGTCTTTGCACGCACTCCCGCATTC 388 Query 6629 TTTCAAGAAAGTCTAATTTACTACAATGGACGACCAGATTTGATGCGTGTCAACAAAGAC 6688 || ||||||||||| | || || | ||||||||| ||||| || | Sbjct 389 TTCCAAGAAAGTCTTGTGTATTATGGTCCCCGACCAGATCTGATGGAAGT----TGTGGG 444 Query 6689 AGCTTAACAAATGCAACAAA---TC-AAATAGTATGTTGGGAAGGTCAAGAAGGTGGATT 6744 || || | ||||||||| || | || ||||||||||| || |||||||| Sbjct 445 AGATTCA-GTGTGCAACAAAGGCTCTTTTTGGTGTGTTGGGAAGGACAGCTTGGTGGATT 503 Query 6745 AGAAGGATTGAGACAAAAGGGATGGA 6770 |||||| ||||||| ||||| |||| Sbjct 504 GGAAGGACTGAGACAGAAGGGTTGGA 529 >seq70391 Length=2338 Score = 107 bits (118), Expect = 1e-19 Identities = 294/441 (67%), Gaps = 26/441 (6%) Strand=Plus/Plus Query 6236 CAAGAAATTAACGATCATGGATTACCAAGAAATTCTAAAATTATTGGCTTGAAGGGAAAG 6295 |||||||| || ||| |||| || ||||| || || || | || || || Sbjct 1795 CAAGAAATCAATGATTTTGGACTAAGTCGAAATGACCTCATCATCGGTCTCAAAGGCAAA 1854 Query 6296 GAACGTGAAGTTAAGAAAAAAGGTCGTTTCTTTTCTCTAATGTCATGGATGTTGCGAGAA 6355 ||||| ||| ||||| || |||| | |||||||| | |||||||||| | || | | Sbjct 1855 GAACGCGAAATTAAGTAAGAAGGAAGGTTCTTTTCCTTGATGTCATGGAAGATGAGGCAG 1914 Query 6356 TATTTTGTGATAACAGAATATTTAATCAAGGAGAATTACGTTCCTCTGTT-TAGTGGATT 6414 || ||||| | ||| ||| | | ||||| || ||| || || ||||| ||| || || Sbjct 1915 TACTTTGTCACAACTGAACACCTGATCAAAGAATTTTATGTCCCACTGTTCTAGGGG-TT 1973 Query 6415 GACAATGGCTGATGATTTGACAACTGTCATATCAA-AATTGTTAGATAGGAGTCAGGGAC 6473 | ||||| || | | |||| | || | |||| | | | |||||| | Sbjct 1974 GGCAATG----ATCACCAAAAAACT----TCTCGACAATTCT-----ATCAATCAGGGTC 2020 Query 6474 AAGGTGGTAAAGATTACACTAATATTTGTATCGCAAATCATATTGACTATGAGAAATGGA 6533 | ||| || ||| | ||||| | | || || ||| |||||||||||||||||| Sbjct 2021 A----GGTC--GACTACCGTTCTATTTCTCTAGCCAACCATGTTGACTATGAGAAATGGA 2074 Query 6534 ACAACCATCAAAGAAAAGCTGCAACTGATCCAGTTTTCAAGGTCATGGGAGAGTTCTTAG 6593 |||||||||||||| | |||| ||| || |||||| | ||||| ||||| | | Sbjct 2075 ACAACCATCAAAGAGCTGAAGCAAATGACCCTGTTTTCCCCATTATGGGGAAGTTCCTCG 2134 Query 6594 GATATCC-CAACTTATT-CACAAGAACTCACGAATTCTTTCAAGAAAGTCTAATTTACTA 6651 | ||| || || || |||| | |||||||||||| ||| ||| || | || || Sbjct 2135 GTCTTCCAGAAGTTTTTGCACA--TATTCACGAATTCTTCCAACCAAGCCTCGTATATTA 2192 Query 6652 CAATGGACGACCAGATTTGAT 6672 | | ||||| ||||||| Sbjct 2193 CGGTCCCCGACCGAATTTGAT 2213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35332918371408