Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_031305.1 Length=10833 Score E Sequences producing significant alignments: (Bits) Value seq17807 120 2e-23 >seq17807 Length=6784 Score = 120 bits (132), Expect = 2e-23 Identities = 243/357 (68%), Gaps = 13/357 (4%) Strand=Plus/Minus Query 5963 GTGAATGATGACGGGATACCTAGAGATCAGCTGGTTATCGGACTGAAAGGGAAGGAACGG 6022 ||||||||| || || | ||||| | || ||||||| |||||||| ||||| ||| Sbjct 5452 GTGAATGATCCAGGTTTATCAAGAGACGACCTAATTATCGGGCTGAAAGGAAAGGAGCGG 5393 Query 6023 GAGTTGAAGAAAAACGGGCGCTTCTTCTCATTGATGTCATGGATGTTGCGAGAATATTTC 6082 || | ||| | | || | ||||| |||||||||||||||| | || | |||||| Sbjct 5392 GAAATTAAGGAGGAGGGCAGATTCTTTTCATTGATGTCATGGAACCTTCGCCAGTATTTC 5333 Query 6083 GTGGTCACTGAGTACCTTATCAA-GCTTCACTATGTTCCCCTTTTCTCAGGCCTGACTAT 6141 || |||| | || ||||| | | ||||| || || ||||| || || || || Sbjct 5332 GTAACAACTGCACATCTGATCAAGGAGTTTTTATGTGCCACTGTTCTCCGGTCTCACAAT 5273 Query 6142 GGCGGATGATCTAACCACAGTCATCACCAAATTATTGGA-----CCG-GACCCAAGGACA 6195 |||||||||||| |||| ||| | | || | | || | | || |||||| | Sbjct 5272 GGCGGATGATCTCACCAAAGTTACGAAAAAGCTTCTAGATAACTCTGTGAACCAAGGTC- 5214 Query 6196 GGGAGGTACATCGTATGAAAATATCTGCATCGCCAATCACATTGATTATGAGAAATGGAA 6255 ||| | ||||| || | ||||||||| ||| | |||||||| || ||||| Sbjct 5213 ----GGT-CTGACTATGAGTCCATTTCCATCGCCAACCACGTGGATTATGAAAAGTGGAA 5159 Query 6256 CAATCATCAACGTCAGGAGGCCACTGCGCCAGTGTTCAGGGTGATGGGACAATTCCT 6312 |||||||| || ||| || || | || |||| ||||||||||| ||||| Sbjct 5158 TAATCATCAGCGCGCTGAGAGCAATGACACCGTATTCAAAGTGATGGGACAGTTCCT 5102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34470906266928