Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_031691.1 Length=11238 Score E Sequences producing significant alignments: (Bits) Value seq12203 93.3 3e-15 seq186615 78.8 7e-11 >seq12203 Length=1511 Score = 93.3 bits (102), Expect = 3e-15 Identities = 172/248 (69%), Gaps = 12/248 (5%) Strand=Plus/Plus Query 4514 CCCAAAAATTGTCCCATTACCTTGAATGTGGGATTATTGGCTGCTCCCCTCTGATGATTG 4573 ||||| |||| ||||| || |||| | || | ||| |||| || || || ||| Sbjct 1210 CCCAAGTATTGCCCCATCACAGTGAACACAGAGTTGTCGGCGTCTCCTCTTTGTTGGTTG 1269 Query 4574 TTCCATTTTTCATAATCTACATGGTTGGCAAAGCTTACA---TGATCATAATTATCCGTA 4630 ||||||||||||||||| | ||||||||| | | | ||| || | || || | | Sbjct 1270 TTCCATTTTTCATAATCAATATGGTTGGCGATGGTAACAGATTGGTAATCGTTTTGC--- 1326 Query 4631 CCTTGACCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTGGAGTTATCTGCCATG 4690 ||||| || ||| ||||||| | ||||| || | ||| |||| ||||||||| Sbjct 1327 CCTTGTCCCAATGAATTGTCCAACAGCTTTTTTGTGACTTTGGTTAAGTTGTCTGCCATG 1386 Query 4691 GTTAGACCTTTAAATAATGGGAC---AAAATGCTTCTTGATCAGATATTCTGTTATTACG 4747 || |||||| ||||| || || || |||||| ||| || | ||| || || ||| Sbjct 1387 GTGAGACCTCCAAATAGGGGTACGTAGAATTGCTTC-TGA--AGGTGTTCCGTAATGACG 1443 Query 4748 AAGTATTC 4755 ||||| || Sbjct 1444 AAGTACTC 1451 >seq186615 Length=1208 Score = 78.8 bits (86), Expect = 7e-11 Identities = 176/260 (68%), Gaps = 12/260 (5%) Strand=Plus/Minus Query 4502 AAGTTGGGGTATCCCAAAAATTGTCCCATTACCTTGAATGTGGGATTATTGGCTGCTCCC 4561 ||||| || | ||||| ||| ||||||| || |||| || || | ||| |||| Sbjct 314 AAGTTTGGCAAACCCAAGAATCGTCCCATCACAGTGAACACAGGGTTGTCGGCGTCTCCT 255 Query 4562 CTCTGATGATTGTTCCATTTTTCATAATCTACATGGTTGGCAAAGCTTACA---TGATCA 4618 | || || |||||||||||||||||||| |||||||| | | | ||| || | | Sbjct 254 TTTTGGTGGTTGTTCCATTTTTCATAATCGTTGTGGTTGGCGATGGTAACAGATTGGTAA 195 Query 4619 TAATTATCCGTACCTTGACCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTGGAG 4678 | || | || ||||| || ||| ||||||| | |||| || | ||| || Sbjct 194 TCGTTTT--GT-CCTTGTCCCAATGAATTGTCCAACAGCCTTTTTGTGACTTTGGTTAAG 138 Query 4679 TTATCTGCCATGGTTAGACCTTTAAATAATGGGACA---AAATGCTTCTTGATCAGATAT 4735 | ||||||||||| |||||| ||||| || ||| || |||||| | || | | Sbjct 137 TCGTCTGCCATGGTGAGACCTCCAAATAGGGGTACATAGAATTGCTTC---AGAAGGTGT 81 Query 4736 TCTGTTATTACGAAGTATTC 4755 || || | |||||||| || Sbjct 80 TCCGTAAGGACGAAGTACTC 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35763924423648