Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_001560.1 Length=11161 Score E Sequences producing significant alignments: (Bits) Value seq133769 147 2e-31 seq283927 134 1e-27 seq225232 116 3e-22 seq176488 116 3e-22 seq49187 91.5 1e-14 >seq133769 Length=136818 Score = 147 bits (162), Expect = 2e-31 Identities = 629/987 (64%), Gaps = 68/987 (7%) Strand=Plus/Minus Query 6251 AAAGAATTTCTTAAAGAGATTGATGAGAAGGGCTT----AGATGATGATGATCTAATTAT 6306 ||||| || | ||||||| |||| |||||| | ||| || || |||| || Sbjct 122693 AAAGAGTTCTTGGAAGAGATCAATGACAAGGGCCTCCCCAGA----GAAGACTTAATCAT 122638 Query 6307 TGGTCTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTCCCTAATGTC 6366 || || || ||||| ||||| || ||||| | ||| |||||||||| || ||||| Sbjct 122637 CGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTC 122578 Query 6367 TTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAA-GACTCATTTCGTCC 6425 ||||| || ||| |||||||||| || ||| || | ||||| || | | | || | Sbjct 122577 GTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTAT-GTAC 122519 Query 6426 CTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGATGTTAG 6485 | |||||| || || |||||||||||||| || || ||| | || || | | | Sbjct 122518 CACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTCG 122459 Query 6486 ATTCCTCATCCGGCCAAGGATTGAAGTCATATGAGGCA---ATTTGCATAGCCAATCACA 6542 | || | |||||| ||| || | | || ||||| ||||||| || Sbjct 122458 ACAGTTCTTTACATCAAGGA-CGAA--CAGACTACTCATCCATTTGTGTAGCCAACCATG 122402 Query 6543 TTGATTACGAAAAATGGAATAACCACCAAAGGAAGTTATCAAACGGCCCAGTGTTCCGAG 6602 |||||||| |||| ||||| || || ||| | | | ||| | || ||| ||| Sbjct 122401 TTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAG 122342 Query 6603 TTATGGGCCAGTTCTTAGGTTATCCATCCTTAATCGAGAGAACTCATGAATTTTTTGAGA 6662 | ||||| ||||| | || ||| | ||| |||||| ||||| || || |||| Sbjct 122341 TCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGA 122282 Query 6663 AAAGTCTTATATACTACAATGGA---AGACCAGACTTGATGCGTGTTCACAACAACACAC 6719 | |||||| | |||| ||||| ||||| || || ||| | || | || Sbjct 122281 ACAGTCTTGT---CTACTATGGACCCAGACCGGATTTAATGGACATGCAAGGGGATACTT 122225 Query 6720 TGAT---CAATTCAACCTCCCAACGAGTTTGTTGGCAAGGACAAGAGGGTGGACTGGAAG 6776 |||| ||| || || | | || || ||| |||||||| | || || || |||| Sbjct 122224 TGATTAGCAAAGCAGACT---ATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAG 122168 Query 6777 GTCTACGGCAAAAAGGATGGACTATCCTCAATCTACTGGTTATTCAAAGAGAGGCTAAAA 6836 | ||| | ||||| || |||| || | ||||| || || | | ||||||| |||| Sbjct 122167 GCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAA 122108 Query 6837 TCAGAAACACTGCTGTCAAAGTCTTGGCACAAGGTGATAATCAAGTTATTTGCACACA-G 6895 | | |||||| || ||| || || ||||| || || ||||| || |||| ||| | Sbjct 122107 CCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTGCA-ACATG 122049 Query 6896 TA---------TAAAAC----------GAAGAAATCGAGAAACGTTGTAGAATTACAGGG 6936 || | |||| |||||||||||| || |||||| || Sbjct 122048 TATCGTCTCCCTGAAACAACCATCGGAGAAGAAATCGAGGAA------AGAATTCGAGAA 121995 Query 6937 TGCTCTCAATCAAATGGTTTCTAATAATGAGAAAATTATGACTGCAATCAAAATAGGGAC 6996 | ||||| ||||| || || |||||||| | | ||| || Sbjct 121994 GTC-----ATCAA--------GAATAACGAAGCCATAATGACTGCCGTGTCAGCAGGAAC 121948 Query 6997 AGGGAAGTTAGGACTTTTGATAAATGACGATGAGACTATGCAATCTGCAGATTACTTGAA 7056 | | || | ||| | | || || |||||||| |||||| | |||| || Sbjct 121947 ACGTAAACTGGGATTGCTAATCAACAGAGATGAGACCATGCAAAGCACTGATTTTCTGTC 121888 Query 7057 TTATGGAAAAATACCGATTTTCCGTGGAGTGATTAGAGGGTTAGAGACCAAGAGATGGTC 7116 ||||| || |||| | ||| | ||| || | |||||| | ||||||||||| Sbjct 121887 CTATGGCAAGGTACCAGTGTTCAGAGGAAACATCCTACCTTTAGAGGCAAAGAGATGGTC 121828 Query 7117 ACGAGTGACTTGTGTCACCAATGACCAAATACCCACTTGTGCTAATATAATGAGCTCAGT 7176 |||||| || || || |||||||| ||| |||| ||| | ||| || | | | Sbjct 121827 ACGAGTTACATGCGTAACCAATGATCAATTACCTTCTTTGTCCAATGTACTTTCAACCAT 121768 Query 7177 TTCCACAAATGCTCTCACCGTAGCTCA 7203 ||| ||||||||| |||| |||||||| Sbjct 121767 TTCAACAAATGCTATCACAGTAGCTCA 121741 >seq283927 Length=152763 Score = 134 bits (148), Expect = 1e-27 Identities = 232/332 (70%), Gaps = 10/332 (3%) Strand=Plus/Minus Query 6293 GATGATCTAATTATTGGTCTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTT 6352 |||||||| || ||||| | ||||||||||| | ||| | ||| || ||| ||||| Sbjct 1668 GATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTC 1609 Query 6353 TTCTCCCTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAAG 6412 |||||||||||||| ||||| | | | |||| || || ||||| ||| | | ||||| Sbjct 1608 TTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAG 1550 Query 6413 --ACTCATTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCA 6470 | || | | | || | ||| ||| || || ||||| ||||| | | | |||| Sbjct 1549 GAATTC--TACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCG 1492 Query 6471 TTAAAAAGATGTTAGATTCCTCATCCGGCCAAGGATTGAAGTCATATGAGGCAATTTGCA 6530 |||||| ||||||| ||| | || ||||| | | || | ||| || Sbjct 1491 CAAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCA 1432 Query 6531 TAGCCAATCACATTGATTACGAAAAATGGAATAACCACCAAAG-GAAGTTATCAAACGGC 6589 | ||||| || || |||||||||||||||||||| |||||||| || | || ||| | Sbjct 1431 TTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGAGATGCTAACAA----C 1376 Query 6590 CCAGTGTTCCGAGTTATGGGCCAGTTCTTAGG 6621 || |||||| | || ||||| || ||||| || Sbjct 1375 CCGGTGTTCAGCGTGATGGGGCAATTCTTGGG 1344 >seq225232 Length=278362 Score = 116 bits (128), Expect = 3e-22 Identities = 435/665 (65%), Gaps = 54/665 (8%) Strand=Plus/Plus Query 6254 GAATTTCTTAAAGAGATTGATGAGAAGGGCTTAGATGATGATGATCTAATTATTGGTCTT 6313 || ||||| | ||||| |||| ||| || | ||||||| |||| | ||| || Sbjct 38673 GAGTTTCTCCAGGAGATAAATGACTCGGGGCTAAGTCGTGATGATTTAATCACTGGCCTA 38732 Query 6314 AAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTCCCTAATGTCTTGGAAA 6373 || || || || || || | ||| || || |||||| || || ||||| ||||| Sbjct 38733 AAGGGCAAAGAAAGAGAGATCAAGAGGGAGGGGAGATTTCTCCTTCTCATGTCATGGAAG 38792 Query 6374 TTGCGAGAATACTTTGTAATTACCGAATA--TTTGATAAAGACTCATTTC--GTCCCTAT 6429 ||| | ||| || || || || ||| | | | || ||| ||||| || || | Sbjct 38793 ATGCAACAATTATTCGTCATGACTGAACACGTCTTATCAAGGA--ATTTCATGTTCCATT 38850 Query 6430 GTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGATGTTAGATTC 6489 |||| ||||| | |||||| ||||| || ||| ||| | ||||||||| | || Sbjct 38851 GTTTTCGGGCCTTAAAATGGCAGACGACCTCACTAGAGTGACTAAAAAGATTCTTGACAA 38910 Query 6490 CTCATCCGGCCAAGGATTGAAGTC-ATATGAG--GCAATTTGCATAGCCAATCACATTGA 6546 |||| | |||||| | |||| ||| | ||| || | ||||||| || | || Sbjct 38911 CTCAATCAACCAAGG--TCAAGTTGATAATCGTTGCATTTCTC-TAGCCAACCATGTGGA 38967 Query 6547 TTACGAAAAATGGAATAACCACCAAAG----GAAGTTATCAAACGGCCCAGTGTTCCGAG 6602 ||||| ||||| || || ||||| || |||| |||||| || || || Sbjct 38968 CTACGAGAAATGAAACAATCACCAGAGAGCCGAAG----CAAACGATCCTGTCTTTACCA 39023 Query 6603 TTATGGGCCAGTTCTTAGGTTATCCA--TCCTTAATCGAGAGAACTCATGAATTTTTTGA 6660 | |||| | ||||||||| ||| | | | | | |||| |||||| ||||| | Sbjct 39024 TCATGGTAAAATTCTTAGGTCTCCCAAATGCCT--TTGCAAGAATTCATGAGTTTTTCCA 39081 Query 6661 GAAAAGTCTTATATACTACAATGGA---AGACCAGACTTGATGC--GTG--------TTC 6707 | || ||| | ||||| |||| || || || ||||| ||| ||| Sbjct 39082 ACACAGCCTTGTGTACTA---TGGACCAAGGCCTGATCTGATGGAAGTGGTTGGAGATTC 39138 Query 6708 ACAACAACACACTG-ATCAATTCAACCTCCCAACGAGTTTGTTGGCAAGGACAAGAGGGT 6766 | ||| ||| | ||| ||| ||| || |||||| | || || || Sbjct 39139 CCTGCAAAACAAGGGATCT-TTC-----CCC-----GTGTGTTGGGAGGGCCAGTTAGGG 39187 Query 6767 GGACTGGAAGGTCTACGGCAAAAAGGATGGACTATCCTCAATCTACTGGTTATTCAAAGA 6826 ||||||||||| || |||||| |||||||| ||| |||| || ||||| | | |||| Sbjct 39188 GGACTGGAAGGGTTAAGGCAAAGAGGATGGAGCATCGTCAACCTTTTGGTTTTACTAAGA 39247 Query 6827 GAGGCTAAAATCAGAAACACTGCTGTCAAAG-TCTTGGCACAAGGTGATAATCAAGTTAT 6885 ||||| |||| | ||||| ||| |||| |||||| ||||| |||||||||||||| Sbjct 39248 GAGGCCAAAACTCGCAACAC-CCTGGTAAAGACCTTGGCCCAAGGAGATAATCAAGTTAT 39306 Query 6886 TTGCA 6890 |||| Sbjct 39307 CTGCA 39311 >seq176488 Length=2532 Score = 116 bits (128), Expect = 3e-22 Identities = 423/651 (65%), Gaps = 26/651 (4%) Strand=Plus/Minus Query 6251 AAAGAATTTCTTAAAGAGATTGATGAGAAGGGCTTAGATGATGATGATCTAATTATTGGT 6310 ||||| ||||| ||||||| |||| |||||| | | || || | || ||||| Sbjct 681 AAAGAGTTTCTCGAAGAGATCAATGACAAGGGCCTCCCCAAGGAAGACTTGATCATTGGC 622 Query 6311 CTTAAAGGAAAGGAGAGGGAACTGAAGTTGGC-AGGTAGATTTTTCTCCCTAATGTCTTG 6369 | ||||| |||||||| ||| | ||| | ||| | ||| |||||||| |||||||| Sbjct 621 TTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCA-ATTCTTCTCCCTCATGTCTTG 563 Query 6370 GAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAA-GACTCATTTCGTCCCTA 6428 ||| || | |||||||||| || ||| || | ||||| || | | ||| || Sbjct 562 GAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAATTGTA-CGTGCCAC 504 Query 6429 TGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGATGTTAGA-- 6486 |||| || || || || ||||| || || || || || | || || | | || Sbjct 503 TGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAACTTCTCGACA 444 Query 6487 -TTCCT--CATCC-GGCCAAG--GATTGAAGTCATATGAGGCAATTTGCATAGCCAATCA 6540 ||| | |||| || ||| |||| | || | | ||||| | ||||| || Sbjct 443 GTTCTTTACATCAAGGACAAACTGATT--ACTCCT------CCATTTGTGTGGCCAACCA 392 Query 6541 CATTGATTACGAAAAATGGAATAACCACCAAAGGAAGTTATCAAACGGCCCAGTGTTCCG 6600 |||||||| | |||||||||||||| ||| | || | ||| ||| || ||||| Sbjct 391 TGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTCCG 332 Query 6601 AGTTATGGGCCAGTTCTTAGGTTATCCATCCTTAATCGAGAGAACTCATGAATTTTTTGA 6660 ||| ||||| ||||| | ||| ||| | ||| ||||| || || || || || Sbjct 331 AGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTTCGA 272 Query 6661 GAAAAGTCTTATATACTACAATGGA---AGACCAGACTTGATGCGTGTTCACAACAACAC 6717 ||| ||||| || ||| ||||| ||||| || || ||| || || |||| Sbjct 271 GAACAGTCTCAT---CTATTATGGACCTAGACCTGATTTAATGGAAGTACAAGGGGACAC 215 Query 6718 ACTGATCAATTCAACCTCCCAACGAGTTTGTTGGCAAGGACAAGAGGGTGGACTGGAAGG 6777 |||||| | | | | | || |||||| |||| || | || || || || || Sbjct 214 CTTGATCAGTAAAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGG 155 Query 6778 TCTACGGCAAAAAGGATGGACTATCCTCAATCTACTGGTTATTCAAAGAGAGGCTAAAAT 6837 | | | |||||||| |||| ||| | ||| | || || | |||| ||||| | Sbjct 154 TTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAAGCTAAGAC 95 Query 6838 CAGAAACACTGCTGTCAAAGTCTTGGCACAAGGTGATAATCAAGTTATTTG 6888 | |||| || |||||| | | ||||| || || || || || || || Sbjct 94 CCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATG 44 >seq49187 Length=20191 Score = 91.5 bits (100), Expect = 1e-14 Identities = 221/332 (67%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 6293 GATGATCTAATTATTGGTCTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTT 6352 ||||| || || || || || |||| |||||| || ||| | ||| | | ||||| Sbjct 6346 GATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTC 6405 Query 6353 TTCTCCCTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAAG 6412 ||||| || ||||| ||||| || | |||||| || | || || | || |||||| Sbjct 6406 TTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAG 6465 Query 6413 -ACTCATTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCAT 6471 | | | | || || | || || |||| ||||| || ||||| ||| || | Sbjct 6466 GAGTTCTAT-GTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGAC 6524 Query 6472 TAAAAAGATGTTAGATTCCTCATCCGGCCAAGGATTGAAGTCATATGAGGCAATTTGCAT 6531 || || | ||||| || | |||||| ||| | ||| | | |||| | Sbjct 6525 AAAGAAACTCCTAGATAGTTCGATCAACCAAGGGCAGAATTACTATAACTCCATTTCTCT 6584 Query 6532 AGCCAATCACATTGATTACGAAAAATGGAATAACCACCAAAGGAAGTTATCAAACGGCCC 6591 || |||||| | ||||| ||||||||||||||||| || || | | || | || Sbjct 6585 GGCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCC 6644 Query 6592 AGTGTTCCGAGTTATGGGCCAGTTCTTAGGTT 6623 ||||||||||| ||||| |||||| |||||| Sbjct 6645 TGTGTTCCGAGTAATGGGTCAGTTCCTAGGTT 6676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35452018454000