Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= NC_001560.1
Length=11161
Score E
Sequences producing significant alignments: (Bits) Value
seq133769 147 2e-31
seq283927 134 1e-27
seq225232 116 3e-22
seq176488 116 3e-22
seq49187 91.5 1e-14
>seq133769
Length=136818
Score = 147 bits (162), Expect = 2e-31
Identities = 629/987 (64%), Gaps = 68/987 (7%)
Strand=Plus/Minus
Query 6251 AAAGAATTTCTTAAAGAGATTGATGAGAAGGGCTT----AGATGATGATGATCTAATTAT 6306
||||| || | ||||||| |||| |||||| | ||| || || |||| ||
Sbjct 122693 AAAGAGTTCTTGGAAGAGATCAATGACAAGGGCCTCCCCAGA----GAAGACTTAATCAT 122638
Query 6307 TGGTCTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTCCCTAATGTC 6366
|| || || ||||| ||||| || ||||| | ||| |||||||||| || |||||
Sbjct 122637 CGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTC 122578
Query 6367 TTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAA-GACTCATTTCGTCC 6425
||||| || ||| |||||||||| || ||| || | ||||| || | | | || |
Sbjct 122577 GTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTAT-GTAC 122519
Query 6426 CTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGATGTTAG 6485
| |||||| || || |||||||||||||| || || ||| | || || | | |
Sbjct 122518 CACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTCG 122459
Query 6486 ATTCCTCATCCGGCCAAGGATTGAAGTCATATGAGGCA---ATTTGCATAGCCAATCACA 6542
| || | |||||| ||| || | | || ||||| ||||||| ||
Sbjct 122458 ACAGTTCTTTACATCAAGGA-CGAA--CAGACTACTCATCCATTTGTGTAGCCAACCATG 122402
Query 6543 TTGATTACGAAAAATGGAATAACCACCAAAGGAAGTTATCAAACGGCCCAGTGTTCCGAG 6602
|||||||| |||| ||||| || || ||| | | | ||| | || ||| |||
Sbjct 122401 TTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAG 122342
Query 6603 TTATGGGCCAGTTCTTAGGTTATCCATCCTTAATCGAGAGAACTCATGAATTTTTTGAGA 6662
| ||||| ||||| | || ||| | ||| |||||| ||||| || || ||||
Sbjct 122341 TCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGA 122282
Query 6663 AAAGTCTTATATACTACAATGGA---AGACCAGACTTGATGCGTGTTCACAACAACACAC 6719
| |||||| | |||| ||||| ||||| || || ||| | || | ||
Sbjct 122281 ACAGTCTTGT---CTACTATGGACCCAGACCGGATTTAATGGACATGCAAGGGGATACTT 122225
Query 6720 TGAT---CAATTCAACCTCCCAACGAGTTTGTTGGCAAGGACAAGAGGGTGGACTGGAAG 6776
|||| ||| || || | | || || ||| |||||||| | || || || ||||
Sbjct 122224 TGATTAGCAAAGCAGACT---ATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAG 122168
Query 6777 GTCTACGGCAAAAAGGATGGACTATCCTCAATCTACTGGTTATTCAAAGAGAGGCTAAAA 6836
| ||| | ||||| || |||| || | ||||| || || | | ||||||| ||||
Sbjct 122167 GCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAA 122108
Query 6837 TCAGAAACACTGCTGTCAAAGTCTTGGCACAAGGTGATAATCAAGTTATTTGCACACA-G 6895
| | |||||| || ||| || || ||||| || || ||||| || |||| ||| |
Sbjct 122107 CCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTGCA-ACATG 122049
Query 6896 TA---------TAAAAC----------GAAGAAATCGAGAAACGTTGTAGAATTACAGGG 6936
|| | |||| |||||||||||| || |||||| ||
Sbjct 122048 TATCGTCTCCCTGAAACAACCATCGGAGAAGAAATCGAGGAA------AGAATTCGAGAA 121995
Query 6937 TGCTCTCAATCAAATGGTTTCTAATAATGAGAAAATTATGACTGCAATCAAAATAGGGAC 6996
| ||||| ||||| || || |||||||| | | ||| ||
Sbjct 121994 GTC-----ATCAA--------GAATAACGAAGCCATAATGACTGCCGTGTCAGCAGGAAC 121948
Query 6997 AGGGAAGTTAGGACTTTTGATAAATGACGATGAGACTATGCAATCTGCAGATTACTTGAA 7056
| | || | ||| | | || || |||||||| |||||| | |||| ||
Sbjct 121947 ACGTAAACTGGGATTGCTAATCAACAGAGATGAGACCATGCAAAGCACTGATTTTCTGTC 121888
Query 7057 TTATGGAAAAATACCGATTTTCCGTGGAGTGATTAGAGGGTTAGAGACCAAGAGATGGTC 7116
||||| || |||| | ||| | ||| || | |||||| | |||||||||||
Sbjct 121887 CTATGGCAAGGTACCAGTGTTCAGAGGAAACATCCTACCTTTAGAGGCAAAGAGATGGTC 121828
Query 7117 ACGAGTGACTTGTGTCACCAATGACCAAATACCCACTTGTGCTAATATAATGAGCTCAGT 7176
|||||| || || || |||||||| ||| |||| ||| | ||| || | | |
Sbjct 121827 ACGAGTTACATGCGTAACCAATGATCAATTACCTTCTTTGTCCAATGTACTTTCAACCAT 121768
Query 7177 TTCCACAAATGCTCTCACCGTAGCTCA 7203
||| ||||||||| |||| ||||||||
Sbjct 121767 TTCAACAAATGCTATCACAGTAGCTCA 121741
>seq283927
Length=152763
Score = 134 bits (148), Expect = 1e-27
Identities = 232/332 (70%), Gaps = 10/332 (3%)
Strand=Plus/Minus
Query 6293 GATGATCTAATTATTGGTCTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTT 6352
|||||||| || ||||| | ||||||||||| | ||| | ||| || ||| |||||
Sbjct 1668 GATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTC 1609
Query 6353 TTCTCCCTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAAG 6412
|||||||||||||| ||||| | | | |||| || || ||||| ||| | | |||||
Sbjct 1608 TTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAG 1550
Query 6413 --ACTCATTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCA 6470
| || | | | || | ||| ||| || || ||||| ||||| | | | ||||
Sbjct 1549 GAATTC--TACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCG 1492
Query 6471 TTAAAAAGATGTTAGATTCCTCATCCGGCCAAGGATTGAAGTCATATGAGGCAATTTGCA 6530
|||||| ||||||| ||| | || ||||| | | || | ||| ||
Sbjct 1491 CAAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCA 1432
Query 6531 TAGCCAATCACATTGATTACGAAAAATGGAATAACCACCAAAG-GAAGTTATCAAACGGC 6589
| ||||| || || |||||||||||||||||||| |||||||| || | || ||| |
Sbjct 1431 TTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGAGATGCTAACAA----C 1376
Query 6590 CCAGTGTTCCGAGTTATGGGCCAGTTCTTAGG 6621
|| |||||| | || ||||| || ||||| ||
Sbjct 1375 CCGGTGTTCAGCGTGATGGGGCAATTCTTGGG 1344
>seq225232
Length=278362
Score = 116 bits (128), Expect = 3e-22
Identities = 435/665 (65%), Gaps = 54/665 (8%)
Strand=Plus/Plus
Query 6254 GAATTTCTTAAAGAGATTGATGAGAAGGGCTTAGATGATGATGATCTAATTATTGGTCTT 6313
|| ||||| | ||||| |||| ||| || | ||||||| |||| | ||| ||
Sbjct 38673 GAGTTTCTCCAGGAGATAAATGACTCGGGGCTAAGTCGTGATGATTTAATCACTGGCCTA 38732
Query 6314 AAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTCCCTAATGTCTTGGAAA 6373
|| || || || || || | ||| || || |||||| || || ||||| |||||
Sbjct 38733 AAGGGCAAAGAAAGAGAGATCAAGAGGGAGGGGAGATTTCTCCTTCTCATGTCATGGAAG 38792
Query 6374 TTGCGAGAATACTTTGTAATTACCGAATA--TTTGATAAAGACTCATTTC--GTCCCTAT 6429
||| | ||| || || || || ||| | | | || ||| ||||| || || |
Sbjct 38793 ATGCAACAATTATTCGTCATGACTGAACACGTCTTATCAAGGA--ATTTCATGTTCCATT 38850
Query 6430 GTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGATGTTAGATTC 6489
|||| ||||| | |||||| ||||| || ||| ||| | ||||||||| | ||
Sbjct 38851 GTTTTCGGGCCTTAAAATGGCAGACGACCTCACTAGAGTGACTAAAAAGATTCTTGACAA 38910
Query 6490 CTCATCCGGCCAAGGATTGAAGTC-ATATGAG--GCAATTTGCATAGCCAATCACATTGA 6546
|||| | |||||| | |||| ||| | ||| || | ||||||| || | ||
Sbjct 38911 CTCAATCAACCAAGG--TCAAGTTGATAATCGTTGCATTTCTC-TAGCCAACCATGTGGA 38967
Query 6547 TTACGAAAAATGGAATAACCACCAAAG----GAAGTTATCAAACGGCCCAGTGTTCCGAG 6602
||||| ||||| || || ||||| || |||| |||||| || || ||
Sbjct 38968 CTACGAGAAATGAAACAATCACCAGAGAGCCGAAG----CAAACGATCCTGTCTTTACCA 39023
Query 6603 TTATGGGCCAGTTCTTAGGTTATCCA--TCCTTAATCGAGAGAACTCATGAATTTTTTGA 6660
| |||| | ||||||||| ||| | | | | | |||| |||||| ||||| |
Sbjct 39024 TCATGGTAAAATTCTTAGGTCTCCCAAATGCCT--TTGCAAGAATTCATGAGTTTTTCCA 39081
Query 6661 GAAAAGTCTTATATACTACAATGGA---AGACCAGACTTGATGC--GTG--------TTC 6707
| || ||| | ||||| |||| || || || ||||| ||| |||
Sbjct 39082 ACACAGCCTTGTGTACTA---TGGACCAAGGCCTGATCTGATGGAAGTGGTTGGAGATTC 39138
Query 6708 ACAACAACACACTG-ATCAATTCAACCTCCCAACGAGTTTGTTGGCAAGGACAAGAGGGT 6766
| ||| ||| | ||| ||| ||| || |||||| | || || ||
Sbjct 39139 CCTGCAAAACAAGGGATCT-TTC-----CCC-----GTGTGTTGGGAGGGCCAGTTAGGG 39187
Query 6767 GGACTGGAAGGTCTACGGCAAAAAGGATGGACTATCCTCAATCTACTGGTTATTCAAAGA 6826
||||||||||| || |||||| |||||||| ||| |||| || ||||| | | ||||
Sbjct 39188 GGACTGGAAGGGTTAAGGCAAAGAGGATGGAGCATCGTCAACCTTTTGGTTTTACTAAGA 39247
Query 6827 GAGGCTAAAATCAGAAACACTGCTGTCAAAG-TCTTGGCACAAGGTGATAATCAAGTTAT 6885
||||| |||| | ||||| ||| |||| |||||| ||||| ||||||||||||||
Sbjct 39248 GAGGCCAAAACTCGCAACAC-CCTGGTAAAGACCTTGGCCCAAGGAGATAATCAAGTTAT 39306
Query 6886 TTGCA 6890
||||
Sbjct 39307 CTGCA 39311
>seq176488
Length=2532
Score = 116 bits (128), Expect = 3e-22
Identities = 423/651 (65%), Gaps = 26/651 (4%)
Strand=Plus/Minus
Query 6251 AAAGAATTTCTTAAAGAGATTGATGAGAAGGGCTTAGATGATGATGATCTAATTATTGGT 6310
||||| ||||| ||||||| |||| |||||| | | || || | || |||||
Sbjct 681 AAAGAGTTTCTCGAAGAGATCAATGACAAGGGCCTCCCCAAGGAAGACTTGATCATTGGC 622
Query 6311 CTTAAAGGAAAGGAGAGGGAACTGAAGTTGGC-AGGTAGATTTTTCTCCCTAATGTCTTG 6369
| ||||| |||||||| ||| | ||| | ||| | ||| |||||||| ||||||||
Sbjct 621 TTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCA-ATTCTTCTCCCTCATGTCTTG 563
Query 6370 GAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAA-GACTCATTTCGTCCCTA 6428
||| || | |||||||||| || ||| || | ||||| || | | ||| ||
Sbjct 562 GAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAATTGTA-CGTGCCAC 504
Query 6429 TGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGATGTTAGA-- 6486
|||| || || || || ||||| || || || || || | || || | | ||
Sbjct 503 TGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAACTTCTCGACA 444
Query 6487 -TTCCT--CATCC-GGCCAAG--GATTGAAGTCATATGAGGCAATTTGCATAGCCAATCA 6540
||| | |||| || ||| |||| | || | | ||||| | ||||| ||
Sbjct 443 GTTCTTTACATCAAGGACAAACTGATT--ACTCCT------CCATTTGTGTGGCCAACCA 392
Query 6541 CATTGATTACGAAAAATGGAATAACCACCAAAGGAAGTTATCAAACGGCCCAGTGTTCCG 6600
|||||||| | |||||||||||||| ||| | || | ||| ||| || |||||
Sbjct 391 TGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTCCG 332
Query 6601 AGTTATGGGCCAGTTCTTAGGTTATCCATCCTTAATCGAGAGAACTCATGAATTTTTTGA 6660
||| ||||| ||||| | ||| ||| | ||| ||||| || || || || ||
Sbjct 331 AGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTTCGA 272
Query 6661 GAAAAGTCTTATATACTACAATGGA---AGACCAGACTTGATGCGTGTTCACAACAACAC 6717
||| ||||| || ||| ||||| ||||| || || ||| || || ||||
Sbjct 271 GAACAGTCTCAT---CTATTATGGACCTAGACCTGATTTAATGGAAGTACAAGGGGACAC 215
Query 6718 ACTGATCAATTCAACCTCCCAACGAGTTTGTTGGCAAGGACAAGAGGGTGGACTGGAAGG 6777
|||||| | | | | | || |||||| |||| || | || || || || ||
Sbjct 214 CTTGATCAGTAAAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGG 155
Query 6778 TCTACGGCAAAAAGGATGGACTATCCTCAATCTACTGGTTATTCAAAGAGAGGCTAAAAT 6837
| | | |||||||| |||| ||| | ||| | || || | |||| ||||| |
Sbjct 154 TTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAAGCTAAGAC 95
Query 6838 CAGAAACACTGCTGTCAAAGTCTTGGCACAAGGTGATAATCAAGTTATTTG 6888
| |||| || |||||| | | ||||| || || || || || || ||
Sbjct 94 CCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATG 44
>seq49187
Length=20191
Score = 91.5 bits (100), Expect = 1e-14
Identities = 221/332 (67%), Gaps = 2/332 (1%)
Strand=Plus/Plus
Query 6293 GATGATCTAATTATTGGTCTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTT 6352
||||| || || || || || |||| |||||| || ||| | ||| | | |||||
Sbjct 6346 GATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTC 6405
Query 6353 TTCTCCCTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAAG 6412
||||| || ||||| ||||| || | |||||| || | || || | || ||||||
Sbjct 6406 TTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAG 6465
Query 6413 -ACTCATTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCAT 6471
| | | | || || | || || |||| ||||| || ||||| ||| || |
Sbjct 6466 GAGTTCTAT-GTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGAC 6524
Query 6472 TAAAAAGATGTTAGATTCCTCATCCGGCCAAGGATTGAAGTCATATGAGGCAATTTGCAT 6531
|| || | ||||| || | |||||| ||| | ||| | | |||| |
Sbjct 6525 AAAGAAACTCCTAGATAGTTCGATCAACCAAGGGCAGAATTACTATAACTCCATTTCTCT 6584
Query 6532 AGCCAATCACATTGATTACGAAAAATGGAATAACCACCAAAGGAAGTTATCAAACGGCCC 6591
|| |||||| | ||||| ||||||||||||||||| || || | | || | ||
Sbjct 6585 GGCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCC 6644
Query 6592 AGTGTTCCGAGTTATGGGCCAGTTCTTAGGTT 6623
||||||||||| ||||| |||||| ||||||
Sbjct 6645 TGTGTTCCGAGTAATGGGTCAGTTCCTAGGTT 6676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35452018454000
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