Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_002526.1 Length=14900 Score E Sequences producing significant alignments: (Bits) Value seq292816 93.3 4e-15 seq283927 93.3 4e-15 >seq292816 Length=4775 Score = 93.3 bits (102), Expect = 4e-15 Identities = 250/372 (67%), Gaps = 23/372 (6%) Strand=Plus/Minus Query 10025 TTGGTAATTGGACTAAAGGCTAAGGAAAGAGAGCTTAAAGAAGAAGGGAG-GtttttttC 10083 |||||||||||||| |||| ||| || ||||| | ||| | ||||| || |||||||| Sbjct 1759 TTGGTAATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAAAAGGAAGGCAGATTTTTTTTC 1700 Query 10084 ATTAATGTCTTATGAAT-TAAGGGATTATTTTGTCTCAACGGAGTACTTAATaaaaaaaT 10142 | | ||||| | |||| | | | | ||| || |||| ||| || | ||||| ||| Sbjct 1699 ACTCATGTCAT-GGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATAAAGGAAT 1641 Query 10143 ACTTTGTGCCATTATTTGAAGGATTGACAATGGCTGATGACC----------TAAATACT 10192 | | ||| || | ||| |||||||| ||||| || || | || | | Sbjct 1640 ATTATGTTCCTCTTTTTTCTGGATTGACTATGGCAGACGATCTCACCAAAGTTATAGAAA 1581 Query 10193 GTTATCaaaaaaaTGTTAGATGTCTCTAGTGGTCAGGGAACAAGG--GAATATGAATACA 10250 |||| ||||| || |||| |||| ||||| || | ||| || ||| || | Sbjct 1580 GTTACGAAAAAGTTGCTAGA--ACTCTGCCGGTCAAGG--CCAGGTCGACTATTCATCAA 1525 Query 10251 TCACAATTGCCAATAATATTGATTATGAAAAATGGAATAACTATCAAAGAATTGAATCCA 10310 |||| | |||| || | || || |||| ||||||||| ||||| | ||| ||| Sbjct 1524 TCACCTTACCCAACCATGTAGACTACAAAAAGTGGAATAACCATCAACGTGCCGAAGCCA 1465 Query 10311 A-TGGGCCGGTGTTCACTGTGATGGGACGATTTTTAGG-CTTGCCTAATTTGTTTACTAG 10368 | | ||| | |||| || ||||||| |||| | || || || || ||||| || Sbjct 1464 ACTATCCCGCTTTTCA-AGTAATGGGACAATTTCTGGGACTATCCGAA-GTGTTTGACAG 1407 Query 10369 AACTCATGAGTT 10380 |||||||||||| Sbjct 1406 AACTCATGAGTT 1395 >seq283927 Length=152763 Score = 93.3 bits (102), Expect = 4e-15 Identities = 127/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 10250 ATCACAATTGCCAATAATATTGATTATGAAAAATGGAATAACTATCAAAGAATTGAATCC 10309 || || |||||||| |||| ||||| |||||||||||||| | |||||| || | Sbjct 1438 ATTACCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGA---GATGCT 1382 Query 10310 AATGGGCCGGTGTTCACTGTGATGGGACGATTTTTAGGCTTGCCTAATTTGTTTACTAGA 10369 || |||||||||| |||||||| | ||| || || |||| || ||||| ||| | Sbjct 1381 AACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGC 1322 Query 10370 ACTCATGAGTTTTTCCAAAAGAGTTTGATCTATTACAACCAAAGACCAGACCTCATG 10426 || || | || || |||| ||||| || |||||| | | | || ||||| ||| Sbjct 1321 ACCCACAAATTCTTTGAAAACAGTTTAATTTATTACGGACCACGTCCGGACCTGATG 1265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47358404894948