Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_002803.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq176488 134 1e-27 seq133769 132 3e-27 seq90283 132 3e-27 seq49187 120 2e-23 seq283927 109 4e-20 seq219500 98.7 7e-17 seq115841 93.3 3e-15 >seq176488 Length=2532 Score = 134 bits (148), Expect = 1e-27 Identities = 384/588 (65%), Gaps = 2/588 (0%) Strand=Plus/Minus Query 6222 ATCATTGGATTGAAAGGGAAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTG 6281 |||||||| ||||||||||| || ||||| | |||| | | || ||||||||| || Sbjct 630 ATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTC 571 Query 6282 ATGTCATGGCAATTGAGGGAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTAT 6341 ||||| ||| | || ||| | |||||||| ||||| |||| || || | || Sbjct 570 ATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAATTGTAC 511 Query 6342 GTTCCGCTCTTCAAGGGATTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGATG 6401 || || || ||||| ||| | |||||||| || || || || || |||||| | Sbjct 510 GTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAACTT 451 Query 6402 TTAGATAACACTAATGGGCAAGGCTTGGACGACTACTCATCTATATGCATTGCGAACCAC 6461 | || | || ||||| || ||||| || || || | || ||||| Sbjct 450 CTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAACCAT 391 Query 6462 ATTGATTATGAAAAATGGAACAATCATCAACGGAAAGAATCCAATGGGCCTGTATTTCGA 6521 ||||||| | |||||||| || |||||||| |||| ||||| || ||| Sbjct 390 GTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTCCGA 331 Query 6522 GTCATGGGTCAATTCTTAGGATACCCTCGACTGTTTGAAAGGACACATGAATTCTTTGAG 6581 || |||||||| || | || || ||| || | || || || || ||||| ||| Sbjct 330 GTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTTCGAG 271 Query 6582 TCAAGTCTCATTTATTATAACGGGAGGCCGGACCTGATGGATGTGAGAGGGGATTCTTTA 6641 |||||||| |||||| || || || | ||||| || |||||| | || Sbjct 270 AACAGTCTCATCTATTATGGACCTAGACCTGATTTAATGGAAGTACAAGGGGACACCTTG 211 Query 6642 GTGAATACAACAGATAAGATAGTCTGCTGGGAAGGGCAAGCAGGCGGATTAGAAGGGCTT 6701 | | || | || | | ||||| |||||||| || ||| || | || ||| || Sbjct 210 ATCAGTAAAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTCGA-GGGTTT 152 Query 6702 TCG-CAGAAAGGATGGAGTGTACTCAATTTACTGGTCATCAATCGAGAATCATCTATCAG 6760 | || ||||| |||||| | | ||||| || || || |||||| | | | | Sbjct 151 GAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCG 92 Query 6761 AAACACAGTTGTAAAGGTGCTGGCTCAGGGGGACAATCAGGTGATCTG 6808 ||| || |||| ||| || || ||||||||||| |||||||| || Sbjct 91 AAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATG 44 >seq133769 Length=136818 Score = 132 bits (146), Expect = 3e-27 Identities = 408/623 (65%), Gaps = 10/623 (2%) Strand=Plus/Minus Query 6193 ATGAAGAGGGATTACCCAGAGATAATCTCATCATTGGATTGAAAGGGAAAGAAAGAGAGC 6252 |||| |||| | |||||||| | | ||||| ||| |||| || ||||| |||||| Sbjct 122671 ATGACAAGGGCCTCCCCAGAGAAGACTTAATCATCGGACTGAAGGGAAAAGAGAGAGAGG 122612 Query 6253 TTAAGATTGCGGGGAGATTCTTCTCTCTGATGTCATGGCAATTGAGGGAGTACTTTGTAA 6312 | |||| | ||| |||| |||||||| ||||| ||| | || | | |||||||| Sbjct 122611 TGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTCGTGGAAGTTACGACAATACTTTGTCT 122552 Query 6313 TTACAGAGTATCTGATCAAGACACAT-TATGTTCCGCTCTTCAAGGGATTAACGATGGCC 6371 ||||| |||| || || | | | ||||| || || || | ||| | || ||||| Sbjct 122551 CAACAGAACATCTCATAAA-AGAGTTGTATGTACCACTGTTTAGTGGACTTACAATGGCG 122493 Query 6372 GACGATCTAACCTCTGTGGTAAAGAAGATGTTAGATAACACTAATGGGCAAGGCTTGGAC 6431 ||||| || || || |||||| | | || | || ||||| | || Sbjct 122492 GACGACCTCACAAAAGTTACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGAC-GAAC 122434 Query 6432 -GACTACTCATCTATATGCATTGCGAACCACATTGATTATGAAAAATGGAACAATCATCA 6490 ||||||||||| || || | || ||||| ||||||| |||| |||||||||||||| Sbjct 122433 AGACTACTCATCCATTTGTGTAGCCAACCATGTTGATTACCAAAAGTGGAACAATCATCA 122374 Query 6491 ACG--GAAAGAATC-CAATGGGCCTGTATTTCGAGTCATGGGTCAATTCTTAGGATACCC 6547 ||| | | | |||| |||| || ||||||||||||| || | ||| || Sbjct 122373 ACGTGGTTCGGCTAACAATA---CTGTCTTCAGAGTCATGGGTCAGTTTGTGGGACTACC 122317 Query 6548 TCGACTGTTTGAAAGGACACATGAATTCTTTGAGTCAAGTCTCATTTATTATAACGGGAG 6607 ||| || | || || ||||| ||||| ||| ||||| | || ||| || Sbjct 122316 AGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAACAGTCTTGTCTACTATGGACCCAG 122257 Query 6608 GCCGGACCTGATGGATGTGAGAGGGGATTCTTTAGTGAATACAACAGATAAGATAGTCTG 6667 ||||| | ||||| || ||||||| |||| | | | | |||| | || || Sbjct 122256 ACCGGATTTAATGGACATGCAAGGGGATACTTTGATTAGCAAAGCAGACTATCCCGTATG 122197 Query 6668 CTGGGAAGGGCAAGCAGGCGGATTAGAAGGGCTTTCGCAGAAAGGATGGAGTGTACTCAA 6727 ||||||||| ||| ||| || | ||||| || || || || ||||| | | || Sbjct 122196 CTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAGCATTGTAAA 122137 Query 6728 TTTACTGGTCATCAATCGAGAATCATCTATCAGAAACACAGTTGTAAAGGTGCTGGCTCA 6787 | | || || || ||||| || | | | ||||| | || || | || || Sbjct 122136 TCTTCTCGTACTCCTGCGAGAGGCAAAAACCCGTAACACTTTAGTTAAAACATTAGCGCA 122077 Query 6788 GGGGGACAATCAGGTGATCTGCA 6810 |||||||| || |||||||||| Sbjct 122076 AGGGGACAACCAAGTGATCTGCA 122054 >seq90283 Length=1560 Score = 132 bits (146), Expect = 3e-27 Identities = 222/319 (70%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 6223 TCATTGGATTGAAAGGGAAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGA 6282 |||| || | || ||||| ||| | || | |||| | ||||||||| ||||| || | Sbjct 237 TCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCCTCA 296 Query 6283 TGTCATGGCAATTGAGGGA--GTACTTTGTAATTACAGAGTATCTGATCAAGACACATTA 6340 ||| |||| | || || || |||||| || || ||||| || |||||| | || Sbjct 297 TGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGTA 356 Query 6341 TGTTCCGCTCTTCAAGGGATTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGAT 6400 ||||||||||||| |||||||| ||||| |||||| | ||| ||| || ||| | Sbjct 357 TGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAAAGTT 416 Query 6401 GTTAGATAA---CACTAATGGGCAAGGCTTGGACGACTACTCATCTATATGCATTGCGAA 6457 | ||||| || ||| ||||| | || |||||| || || | |||| || Sbjct 417 ACTGGATAATTCCATCAAT---CAAGGATCAGATGACTACAACTCCATTTCTCTTGCAAA 473 Query 6458 CCACATTGATTATGAAAAATGGAACAATCATCAACGGAAAGAATCCAATGGGCCTGTATT 6517 ||| || || ||||||||||||||||| || || || || | | || | || | || Sbjct 474 CCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAGCTTT 533 Query 6518 TCGAGTCATGGGTCAATTC 6536 |||||||||| |||||| Sbjct 534 AAGAGTCATGGGACAATTC 552 >seq49187 Length=20191 Score = 120 bits (132), Expect = 2e-23 Identities = 248/369 (67%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 6210 AGAGATAATCTCATCATTGGATTGAAAGGGAAAGAAAGAGAGCTTAAGATTGCGGGGAGA 6269 |||||| | || || || || | |||| || |||||||| | |||| | || ||| Sbjct 6343 AGAGATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGA 6402 Query 6270 TTCTTCTCTCTGATGTCATGGCAATTGAGGGAGTACTTTGTAATTACAGAGTATCTGATC 6329 |||||||| || ||||| ||| | ||||| | |||| || | |||||| | | || Sbjct 6403 TTCTTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATA 6462 Query 6330 AAGACACATTATGTTCCGCTCTTCAAGGGATTAACGATGGCCGACGATCTAACCTCTGTG 6389 ||| ||||| || || ||| |||||| || ||||| || ||||| || ||| Sbjct 6463 AAGGAGTTCTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTG 6522 Query 6390 GTAAAGAAGATGTTAGATAACACTAATGGGCAAGGCTTGGACGACTACTCATCTATATGC 6449 |||||| | |||||| | | ||||| | | |||| || || | Sbjct 6523 ACAAAGAAACTCCTAGATAGTTCGATCAACCAAGGGCAGAATTACTATAACTCCATTTCT 6582 Query 6450 ATTGCGAACCACATTGATTATGAAAAATGGAACAATCATCAACGGAAAGAATCCAATGGG 6509 | || || ||| | ||||||||||||||||| || ||||| ||| || | ||| | Sbjct 6583 CTGGCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGT 6642 Query 6510 CCTGTATTTCGAGTCATGGGTCAATTCTTAGGATACCCTCGACTGTTTGAAAGGACACAT 6569 ||||| || ||||| |||||||| ||| |||| | ||| ||||| | | || ||| Sbjct 6643 CCTGTGTTCCGAGTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCAT 6702 Query 6570 GAATTCTTT 6578 || |||||| Sbjct 6703 GAGTTCTTT 6711 >seq283927 Length=152763 Score = 109 bits (120), Expect = 4e-20 Identities = 286/433 (66%), Gaps = 10/433 (2%) Strand=Plus/Minus Query 6193 ATGAAGAGGGATTACCCAGAGATAATCTCATCATTGGATTGAAAGGGAAAGAAAGAGAGC 6252 |||| | ||||| ||||||| |||||||||||||||| ||||| || ||| | || Sbjct 1688 ATGACAACGGATTGGACAGAGATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAA 1629 Query 6253 TTAAGATTGCGGGGAGATTCTTCTCTCTGATGTCATGGCAATTGAGGGAGTACTTTGTAA 6312 | |||| | || ||||||||||| || ||||| ||| | | | || || || | Sbjct 1628 TCAAGAAGGAAGGAAGATTCTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCA 1569 Query 6313 TTACAGAGTATCTGATCAAGACACATTATGTTCCGCTCTTCAAGGGATTAACGATGGCCG 6372 ||||||| | || | ||| | || | || || || ||| | || ||||| | Sbjct 1568 TTACAGA-AACCTACTAAAGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAG 1510 Query 6373 ACGATCTAACCTCTGTGGTAAAGAAGATGTTAGATAACACTAATGGGCAAGGCTTGGACG 6432 |||| | | || | ||| ||| ||||||| || | || ||||| ||||| Sbjct 1509 ACGACTTGATGGAAGTCGCAAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACG 1450 Query 6433 ACTACTCATCTATATGCATTGCGAACCACATTGATTATGAAAAATGGAACAATCATCAAC 6492 | ||| || || |||||| ||||| || ||||| ||||||||||| ||||| ||| Sbjct 1449 ATTACCAATTGATTACCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAA- 1391 Query 6493 GGAAAGAATCCAATGGGCCTGTATTTCGAGTCATGGGTCAATTCTTAGGATACCCTCGAC 6552 | ||| | || || || || | || ||||| |||||||| ||| || Sbjct 1390 --AGAGATGCTAACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACT 1333 Query 6553 TGTTTGAAAGGACACATGAATTCTTTGAGTCAAGTCTCATTTATTATAACGG---GAGGC 6609 |||| | || || |||||||||| ||| | ||||||| |||| | | Sbjct 1332 TGTTAACTCGCACCCACAAATTCTTTGAAAACAGTTTAATTTATT---ACGGACCACGTC 1276 Query 6610 CGGACCTGATGGA 6622 ||||||||||||| Sbjct 1275 CGGACCTGATGGA 1263 >seq219500 Length=51628 Score = 98.7 bits (108), Expect = 7e-17 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 6879 AACAATCAGACGATCATGAATG--GGATCATAACAGGGACAGGAAAATTGGGATTAATCA 6936 |||||| || ||||||||| | | ||| |||||||| || || |||||| | | Sbjct 6351 AACAATGAGGCGATCATGACCGCTGTATCTG--CAGGGACAAAGAAGTTAGGATTACTGA 6294 Query 6937 TTAACAATGATGAGACCATGCAATCGGCGGATTACTTAAATTACGGTAAAGTGCCTGTTT 6996 | |||| |||||||| ||||| | || | || ||| |||||||| ||||| | Sbjct 6293 TCAACAGAGATGAGACAATGCAGAGCACAGACTTTTTGTCTTATGGTAAAGTACCTGTCT 6234 Query 6997 TTCGAGG-AATAT-TAAGGGGGTTGGAAACCAAACGATGGTCTAGAGTCACCTGCATCAC 7054 || |||| ||||| | | ||||| | ||||||||||| |||||||| ||| |||| Sbjct 6233 TTAGAGGTAATATCTTACCAC--TGGAAGCAAAACGATGGTCCAGAGTCACATGCGTCAC 6176 Query 7055 CAATGATCAGATTCC 7069 |||||||||| |||| Sbjct 6175 CAATGATCAGCTTCC 6161 >seq115841 Length=1175 Score = 93.3 bits (102), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 6223 TCATTGGATTGAAAGGGAAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGA 6282 |||| || | || ||||| ||| | || | |||| | ||||||||| ||||| || | Sbjct 925 TCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCCTCA 984 Query 6283 TGTCATGGCAATTGAGGGA--GTACTTTGTAATTACAGAGTATCTGATCAAGACACATTA 6340 ||| |||| | || || || |||||| || || ||||| || |||||| | || Sbjct 985 TGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGTA 1044 Query 6341 TGTTCCGCTCTTCAAGGGATTAACGATGGCCGACGATCTAACC 6383 ||||||||||||| |||||||| ||||| |||||| | ||| Sbjct 1045 TGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACC 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34999507297104