Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_008514.1 Length=11545 Score E Sequences producing significant alignments: (Bits) Value seq133769 242 3e-60 seq176488 138 8e-29 seq283927 136 3e-28 seq90283 134 1e-27 seq219500 132 4e-27 seq190743 105 5e-19 seq292816 89.7 4e-14 seq49187 89.7 4e-14 seq243684 82.4 6e-12 >seq133769 Length=136818 Score = 242 bits (268), Expect = 3e-60 Identities = 627/933 (67%), Gaps = 42/933 (5%) Strand=Plus/Minus Query 6694 AGAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGTTT 6753 |||||| | | |||||| |||| || ||||| ||||| | ||||||| || || || Sbjct 122652 AGAAGACTTAATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATT 122593 Query 6754 CTTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATCAA 6813 ||||| || ||||| ||||| |||||| | || || ||| |||||| |||| || || Sbjct 122592 TTTCTCTCTCATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAA 122533 Query 6814 ACACCACTTTGTCCCACTATTTCATGGATTGACTATGGCGGATGACATGACTCAAGTTAT 6873 | | | ||| ||||| ||| |||| | || |||||||| ||| | || |||||| Sbjct 122532 AGAGTTGTATGTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTAC 122473 Query 6874 GAAGAAAATGTTAGACAGAAGTCAAGGGCAAGGAGAGAATGACTAC-CAGAGAGTCAGTA 6932 |||||| | | ||||| | | |||||| | |||||| || | | || Sbjct 122472 AAAGAAACTTCTCGACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTT-GTG 122414 Query 6933 TTGCAAACCATATTGACTATGAAAAGTGGAACAATCACCAAAGGAGAGAATCAAATGGAC 6992 | || |||||| |||| || |||||||||||||||| ||| | | | || | Sbjct 122413 TAGCCAACCATGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAA--CAA 122356 Query 6993 CAACGT-TTC-GCGTGATGGGACAATTCTTGGG-CTATC-CATCTTTGATCGAAAAGACG 7048 | || ||| | || ||||| || || |||| ||| | | |||| ||| | ||| Sbjct 122355 TACTGTCTTCAGAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTT--TCGTGAGAACG 122298 Query 7049 CATGAGTTCTTCGAGAAAAGCCCGATATACTACAATGG---CAGGCCGGATTTAATG--C 7103 ||||||||||||||||| || | | |||| |||| ||| |||||||||||| | Sbjct 122297 CATGAGTTCTTCGAGAACAGTC---TTGTCTACTATGGACCCAGACCGGATTTAATGGAC 122241 Query 7104 AAGTAACTGGAAACCAGGTGATCAACTCCACTGATAAACTTGTTTGCTGGCAGGGACAAA 7163 | | || ||| || |||| | | | || | | || |||||| | ||||||| Sbjct 122240 ATGCAAGGGGATAC--TTTGATTAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAA 122183 Query 7164 AGGGAGGGCTAGAGGGACTAAGACAGAAAGGATGGAGCATTTTGAATCTGTTAATCATCA 7223 | ||||| || || || |||||||| || || ||||||||| | ||||| | | || Sbjct 122182 AAGGAGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCC 122123 Query 7224 GGAGAGAGTCTAAAATCCGGAACACTCGAGTCCAGACTCTGGCGCAAGGAGACAATCAAG 7283 | ||||| | |||| ||| |||||| ||| | || | |||||||| ||||| |||| Sbjct 122122 TGCGAGAGGCAAAAACCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAG 122063 Query 7284 TCATTTGCACCCAATATATGCTCAGCC--------CCAGCAGAGATGAGAAAGAGATGAA 7335 | || |||| | || ||| || || ||| | |||| ||||| || ||| Sbjct 122062 TGATCTGCAAC--ATGTATCGTCTCCCTGAAACAACCATCGGAGA--AGAAATCGAGGAA 122007 Query 7336 AGAGAAGCTGAAACACATAGCAGAAAACAATGGGGTTATCATGAGCGCCATCGAGAG-GG 7394 ||| | | || ||| || | || || | | || |||| ||| | | || | Sbjct 122006 AGA-ATTCGAGAAGTCAT--CA-AGAATAACGAAGCCATAATGACTGCCGT-GTCAGCAG 121952 Query 7395 GCACAAACAAATTGGGTTTAATTATCAACAATGATGAGACTATCCAGTCAGCA--GATTT 7452 | ||| ||| |||| || | ||||||| |||||||| || || |||| ||||| Sbjct 121951 GAACACGTAAACTGGGATTGCTAATCAACAGAGATGAGACCATGCA--AAGCACTGATTT 121894 Query 7453 CCTGACATATGGAAAAATACCAATCTTCCGCGGAAACATTCGTTGTCTAGAAGGGAAAAG 7512 ||| | ||||| || ||||| | ||| | |||||||| | | |||| | || || Sbjct 121893 TCTGTCCTATGGCAAGGTACCAGTGTTCAGAGGAAACATCCTACCTTTAGAGGCAAAGAG 121834 Query 7513 GTGGTCCAGGGTGACATGTGTGACCAATGATCAACTTCCAAATTTATCTAATGTTTTGTC 7572 ||||| | || ||||| || |||||||||||| | || ||| || ||||| | || Sbjct 121833 ATGGTCACGAGTTACATGCGTAACCAATGATCAATTACCTTCTTTGTCCAATGTACTTTC 121774 Query 7573 ATCAGTCTCAACAAATGCTCTAACCGTCTCTCA 7605 | | | |||||||||||| | || || |||| Sbjct 121773 AACCATTTCAACAAATGCTATCACAGTAGCTCA 121741 Score = 78.8 bits (86), Expect = 7e-11 Identities = 113/157 (72%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 6187 CTTTGGATCTTTCAGACACTGGGGGCATCCATTCATTGATTACTTTGAGGGCCTCAAAAA 6246 || ||| || |||||||| ||||| ||||||||| | |||||| || |||||| | || Sbjct 123159 CTATGGCTCATTCAGACATTGGGGCCATCCATTCTTGGATTACCAAGATGGCCTCCAGAA 123100 Query 6247 ACTGAACAAGCAGGTCACGTTGCAAAAAGAGATAGATGACAAA-TATGCAAATGCATTAG 6305 ||| ||| || || || | || |||||||| ||| | ||||| | || | | Sbjct 123099 ACTACACACACAAGTTCAAATGGAGAAGGAGATAGAC-ACAGACTATGCTGAATCACTGG 123041 Query 6306 CAAGTGATCTGGCCTATATAGTCCTGAAGAAGGAATT 6342 |||||||||| |||| || || || |||| ||||| Sbjct 123040 CAAGTGATCTAGCCTTCATGGTGTTGGAGAAAGAATT 123004 >seq176488 Length=2532 Score = 138 bits (152), Expect = 8e-29 Identities = 399/606 (66%), Gaps = 20/606 (3%) Strand=Plus/Minus Query 6695 GAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGTTTC 6754 ||||| || | || || ||||||||||| || |||||| ||||||||| | | ||| Sbjct 639 GAAGACTTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTC 580 Query 6755 TTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATCAAA 6814 |||||||| ||||| ||||| ||| | | || || ||| |||||| |||| || ||| Sbjct 579 TTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAA 520 Query 6815 CACCACTTTGTCCCACTATTTCATGGATTGACTATGGCGGATGACATGACTCAAGTTATG 6874 | | || ||||| || | ||| | || ||||| |||||| | || | |||| Sbjct 519 GAATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACA 460 Query 6875 AAGAAAATGTTAGACAGAAGTCAAGGGCAAGGAGAGAATGACTACCAGAGAGTCAGTATT 6934 |||||| | | ||||| | | |||||| | | ||| ||| | || | Sbjct 459 AAGAAACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTG 400 Query 6935 GCAAACCATATTGACTATGAAAAGTGGAACAATCACCAAAGGAGAGAATCAAATGGACCA 6994 || |||||| |||| || | || ||||| || || ||| | | | || || Sbjct 399 GCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCT 340 Query 6995 ACGTTTCGCGTGATGGGACAATTCTTGGG-CTATC-CATCTTTGATCGAAAAGACGCATG 7052 || || |||||||| || || |||| || | | |||| ||| | ||||| | Sbjct 339 GTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTT--TCGTCAGAACGCACG 282 Query 7053 AGTTCTTCGAGAAAAGCCCGATATACTACAATGG---CAGGCCGGATTTAATGCAAGT-- 7107 ||||||||||||| || | || ||| |||| || || ||||||||| |||| Sbjct 281 AGTTCTTCGAGAACAGTCTCAT---CTATTATGGACCTAGACCTGATTTAATGGAAGTAC 225 Query 7108 AACTGGAAACCAGGTGATC---AACTCCACTGATAAACTTGTTTGCTGGCAGGGACAAAA 7164 || ||| ||| ||||| || | | | || | ||| || ||| | || || || Sbjct 224 AAGGGGACACC--TTGATCAGTAAAGCAAGTTAT---CCTGTCTGTTGGGAAGGCCAGAA 170 Query 7165 GGGAGGGCTAGAGGGACTAAGACAGAAAGGATGGAGCATTTTGAATCTGTTAATCATCAG 7224 || || || ||||| | ||||| ||||| ||||| ||| ||||| || | | || Sbjct 169 AGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTT 110 Query 7225 GAGAGAGTCTAAAATCCGGAACACTCGAGTCCAGACTCTGGCGCAAGGAGACAATCAAGT 7284 | |||| |||| | ||| || || | ||| |||| || || || || ||||| || || Sbjct 109 GCGAGAAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGT 50 Query 7285 CATTTG 7290 || || Sbjct 49 GATATG 44 >seq283927 Length=152763 Score = 136 bits (150), Expect = 3e-28 Identities = 240/346 (69%), Gaps = 8/346 (2%) Strand=Plus/Minus Query 6680 AATGGGTTAGACGAAGAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAG 6739 || || || ||| ||| ||||| | || ||||| ||||| || ||| | ||| | ||| Sbjct 1683 AACGGATTGGACAGAGATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAG 1624 Query 6740 AAAGCAGGACGTTTCTTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACA 6799 || | |||| | ||||||||||| ||||| ||||| | | | | ||||||||||| ||| Sbjct 1623 AAGGAAGGAAGATTCTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACA 1564 Query 6800 GAATATCTGATCAAACACCACTTTGTCCCACTATTTCATGGATTGACTATGGCGGATGAC 6859 ||| | || | || | || | || |||||| ||| | || ||||| || ||| Sbjct 1563 GAA-ACCTACTAAAGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGAC 1505 Query 6860 ATGACTCAAGTTATGAAGAAAATGTTAGACAGAAGTCA--AGGGCAAGGAGAGAATGACT 6917 ||| |||| || || |||||||| || ||| || ||||| || | || | Sbjct 1504 TTGATGGAAGTCGCAAAAAAGTTGTTAGAC--AATTCACCGGGACAAGGGCAGGACGATT 1447 Query 6918 ACCAGAGAGTCAGTATTGCAAACCATATTGACTATGAAAAGTGGAACAATCACCAAAGGA 6977 |||| | | ||||| |||||||| || || ||||| ||||| ||||||||| | Sbjct 1446 ACCAATTGATTACCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAA---A 1390 Query 6978 GAGAATCAAATGGACCAACGTTTCGCGTGATGGGACAATTCTTGGG 7023 |||| | || || ||| |||||||||| ||||||||||| Sbjct 1389 GAGATGCTAACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGG 1344 >seq90283 Length=1560 Score = 134 bits (148), Expect = 1e-27 Identities = 354/533 (66%), Gaps = 18/533 (3%) Strand=Plus/Plus Query 6693 AAGAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGTT 6752 ||||||| ||||| || || | || ||||| ||| | ||| | ||||| | || | | Sbjct 225 AAGAAGACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGAT 284 Query 6753 TCTTCTCCCTTATGTCATGGAAATTACGAGA--GTATTTCGTCATGACAGAATATCTGAT 6810 | |||||||| |||| |||||| ||| |||| ||| ||||| ||| || || || || Sbjct 285 TTTTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCAT 344 Query 6811 CAAACACCACTTTGTCCCACTATTTCATGGATTGACTATGGCGGATGACATGACTCAAGT 6870 ||| | | | ||| || || || |||||| || |||||||| || |||| |||| Sbjct 345 CAAGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGT 404 Query 6871 TATGAAGAAAATGTTAGAC-AGAAGTCAAGGG--CAAGGAGAGAATGACTACCAGAGAGT 6927 || |||| |||| | || || | |||||| |||||||| | | Sbjct 405 ---GACCAAAAAGTTACTGGATAATTCCATCAATCAAGGATCAGATGACTACAACTCCAT 461 Query 6928 CAGTATTGCAAACCATATTGACTATGAAAAGTGGAACAATCACCAAAGGAGAGAATCAAA 6987 | ||||||||||||| ||||||||||| |||||||| ||||| ||| ||| | | || Sbjct 462 TTCTCTTGCAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAA 521 Query 6988 TGGACCAACGTTTCGCGTGATGGGACAATTCTTGGGCTATCCATCTTTGATCGAAAAGAC 7047 | ||| | || | || |||||||||||| | || | | | ||| | | | || Sbjct 522 CGATCCAGCTTTAAGAGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAAC 581 Query 7048 GCATGAGTTCTTCGAGAAAAGCCCGATATACTACAATGGCAGGCCGGATTTAATGCAAGT 7107 || |||||||| | |||| | |||||| | | || || |||||| |||| Sbjct 582 ACACGAGTTCTTTGGAGGCAGCCTTGTCTACTACGGACCCCGTCCTGACTTAATGGAAGT 641 Query 7108 AACTGGAAACCAGGTGATCAACTCCACTGA-TAAACT----TGTTTGCTGGCAGGGACAA 7162 | |||| | || | | || || | |||| ||| |||||| || |||| Sbjct 642 AGATGGAGA----GTCA-CTACGGAACAAAGGGAACTTCCCTGTCTGCTGGAAGAGACAG 696 Query 7163 AAGGGAGGGCTAGAGGGACTAAGACAGAAAGGATGGAGCATTTTGAATCTGTT 7215 ||||| | || || || |||| ||||| ||||||||| | ||||| || Sbjct 697 CTCGGAGGCTTGGAAGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCTATT 749 >seq219500 Length=51628 Score = 132 bits (146), Expect = 4e-27 Identities = 253/364 (70%), Gaps = 18/364 (5%) Strand=Plus/Minus Query 7237 AATCCGGAACACTCGAGTCCAGACTCTGGCGCAAGGAGACAATCAAGTCATTTGCACCCA 7296 || ||||||||||| |||| | || |||| || || |||||||||||||| |||| | Sbjct 6475 AACCCGGAACACTCTAGTCAAAACGTTGGCTCAGGGTGACAATCAAGTCATCTGCAAC-- 6418 Query 7297 ATATATGCTCAGCCCCAG-----CAGAGATGAGAAAG-AGATGAAAGAGAAGCTGA-AAC 7349 || || || || || ||| | || ||| ||| |||||| | | || || Sbjct 6417 ATGTACCGTCTACCTGAGATGAACAGTCAAGAAGAAGTAGAGGAAAGA--ATCCGAGAAG 6360 Query 7350 ACATAGCAGAAAACAATGGGGTTATCATGAGCGCC--ATCGAGAGGGGCACAAACAAATT 7407 ||| || ||||||||| || ||||||| ||| ||| |||| ||||| || || Sbjct 6359 TCAT--CA-AAAACAATGAGGCGATCATGACCGCTGTATCTGCAGGG--ACAAAGAAGTT 6305 Query 7408 GGGTTTAATTATCAACAATGATGAGACTATCCAGTCAGCAGATTTCCTGACATATGGAAA 7467 || ||| | ||||||| |||||||| || ||| |||| || || | ||||| || Sbjct 6304 AGGATTACTGATCAACAGAGATGAGACAATGCAGAGCACAGACTTTTTGTCTTATGGTAA 6245 Query 7468 AATACCAATCTTCCGCGGAAACATTCGTTGTCTAGAAGGGAAAAGGTGGTCCAGGGTGAC 7527 | |||| |||| | || || || || |||| ||| | |||||||| || || Sbjct 6244 AGTACCTGTCTTTAGAGGTAATATCTTACCACTGGAAGCAAAACGATGGTCCAGAGTCAC 6185 Query 7528 ATGTGTGACCAATGATCAACTTCCAAATTTATCTAATGTTTTGTCATCAGTCTCAACAAA 7587 ||| || ||||||||||| ||||| ||| |||||||| | || | |||||||||| Sbjct 6184 ATGCGTCACCAATGATCAGCTTCCTTCTTTGTCTAATGTGCTCTCTACCATCTCAACAAA 6125 Query 7588 TGCT 7591 |||| Sbjct 6124 TGCT 6121 >seq190743 Length=4772 Score = 105 bits (116), Expect = 5e-19 Identities = 193/272 (71%), Gaps = 18/272 (7%) Strand=Plus/Plus Query 6694 AGAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGTTT 6753 ||| || || ||||| |||||||||| | ||||| | | || |||| || | || Sbjct 4489 AGATGACTTGATTATCAGATTGAAAGGCATAGAAAATAAGATCAAAAAAGAGGGCCACTT 4548 Query 6754 CTTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATCAA 6813 ||| ||||| ||||||||||| || || |||||||||| || || ||| |||| | || Sbjct 4549 CTTTTCCCTAATGTCATGGAATTTGAGACAGTATTTCGTAATAACCGAACATCTCTTAAA 4608 Query 6814 ACACCACTTTGTCCCACT-ATTTCATGGATTGACTATGGCGGATGACATGACTCAAGTTA 6872 | | | ||||||||| | ||| ||| |||| ||| | |||||| |||| |||| || Sbjct 4609 AGAGTTTTATGTCCCACTCCTCTCA-GGAGTGACCATGACAGATGACTTGAC-CAAGGTA 4666 Query 6873 TGAAGAAAATGTTAGACAGAAGTC---AAGGGCAA-GGAGAGAATGACTACCAGAGAGT- 6927 | ||| |||||||| || || ||||||| |||||| |||| | | ||| Sbjct 4667 ACTAAAAACTGTTAGAC--AACTCCTTTAGGGCAAGGGAGAG-ATGATT----GTAAGTC 4719 Query 6928 CAGTA---TTGCAAACCATATTGACTATGAAA 6956 || || | || ||||| ||||||||| ||| Sbjct 4720 CACTACACTCGCTAACCACATTGACTATAAAA 4751 >seq292816 Length=4775 Score = 89.7 bits (98), Expect = 4e-14 Identities = 252/380 (66%), Gaps = 19/380 (5%) Strand=Plus/Minus Query 6693 AAGAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACG-T 6751 |||| || |||| || ||| |||| || ||||| |||||| | || || | ||| | | Sbjct 1767 AAGATGACTTGGTAATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAAAAGGAAGGCAGAT 1708 Query 6752 TTCTTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATC 6811 || || || || ||||||||||| | || ||| |||||| | || || | || || Sbjct 1707 TTTTTTTCACTCATGTCATGGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATA 1648 Query 6812 AAACACCACTTTGTCCCACTATTTCATGGATTGACTATGGCGGATGACATGACTCAAGTT 6871 || | | | ||| || || ||| ||||||||||||||| || || | || ||||| Sbjct 1647 AAGGAATATTATGTTCCTCTTTTTTCTGGATTGACTATGGCAGACGATCTCACCAAAGTT 1588 Query 6872 AT-GAA------GAAAATGTTAGACAGAAGTC--AAGGGCAAGGAGAGAATGACTACCAG 6922 || ||| ||||| ||| | |||| || || ||||| || ||||| Sbjct 1587 ATAGAAAGTTACGAAAAAGTT-GCTAGAACTCTGCCGGTCAAGGCCAGGTCGACTATTCA 1529 Query 6923 AGAGTCAGTATTGCAAACCATATTGACTATGAAAAGTGGAACAATCACCAAAGGAGAGAA 6982 | ||| | | |||||| | ||||| |||||||||| || || ||| | ||| Sbjct 1528 TCAATCACCTTACCCAACCATGTAGACTACAAAAAGTGGAATAACCATCAACGTGCCGAA 1469 Query 6983 TCAAATGGACCAACGTTTCGCGTGATGGGACAA-TTCTTGGGCTATCC---ATCTTTGAT 7038 | || || | |||| || ||||||||| |||| || |||||| | ||||| Sbjct 1468 GCCAACTATCCCGCTTTTCAAGTAATGGGACAATTTCTGGGACTATCCGAAGTGTTTGAC 1409 Query 7039 CGAAAAGACGCATGAGTTCT 7058 || || |||||||||| Sbjct 1408 AGA----ACTCATGAGTTCT 1393 >seq49187 Length=20191 Score = 89.7 bits (98), Expect = 4e-14 Identities = 217/327 (66%), Gaps = 4/327 (1%) Strand=Plus/Plus Query 6694 AGAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGTTT 6753 ||| || ||| | ||||| | |||| || ||||||||| ||||||||| | | | || Sbjct 6345 AGATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATT 6404 Query 6754 CTTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATCAA 6813 |||||| || ||||| ||||| | | | || | ||||| ||||| | | || || Sbjct 6405 CTTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAA 6464 Query 6814 ACACCACTTTGTCCCACTATTTCATGGATTGACTATGGCGGATGACATGACTCAAGTTAT 6873 | || ||| || || || |||||||||||||| ||||| ||||| | || | Sbjct 6465 GGAGTTCTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGAC 6524 Query 6874 GAAGAAAATGTTAGACAG--AAGTCAAGGGCAAGGAGAGAATGACTACCAGAGAGTCAGT 6931 |||||| | |||| || |||| ||||| ||||| |||| | | | Sbjct 6525 AAAGAAACTCCTAGATAGTTCGATCAA--CCAAGGGCAGAATTACTATAACTCCATTTCT 6582 Query 6932 ATTGCAAACCATATTGACTATGAAAAGTGGAACAATCACCAAAGGAGAGAATCAAATGGA 6991 | ||||| || | || |||||||| ||||| || || || || | || | ||| | Sbjct 6583 CTGGCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGT 6642 Query 6992 CCAACGTTTCGCGTGATGGGACAATTC 7018 || ||| || || ||||| || ||| Sbjct 6643 CCTGTGTTCCGAGTAATGGGTCAGTTC 6669 >seq243684 Length=7106 Score = 82.4 bits (90), Expect = 6e-12 Identities = 90/120 (75%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 6694 AGAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGTTT 6753 |||| ||||| | ||||| ||||||| || | ||| | ||||||| ||||| || Sbjct 1063 AGAACATCTGATAATCGGTCTGAAAGG-----AATGGGAAATCAAGAAAGAGGGACGATT 1009 Query 6754 CTTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATCAA 6813 ||||||||||||||||||| | ||| | | |||||| | || | |||| |||| |||| Sbjct 1008 CTTCTCCCTTATGTCATGGGAGTTAAGGAAATATTTCATAATAAAAGAACATCTTCTCAA 949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36675710596592