Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_011639.1 Length=13196 Score E Sequences producing significant alignments: (Bits) Value seq283927 149 5e-32 seq90283 109 5e-20 seq49187 105 6e-19 >seq283927 Length=152763 Score = 149 bits (164), Expect = 5e-32 Identities = 265/382 (69%), Gaps = 6/382 (2%) Strand=Plus/Minus Query 8394 TCTCATCATTGGACTAAAAGCTAAAGAAAGAGAAATGAA-ACGGATTGGAAGATTCTTCT 8452 ||||||||||||| |||||| || ||| | ||||| || | ||| ||||||||||||| Sbjct 1663 TCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAA-GGAAGATTCTTCT 1605 Query 8453 CTTTAATGTCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAAT 8512 | ||||||| ||| | || | | ||||| || |||| || |||| | ||||||| Sbjct 1604 CCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAAT 1546 Query 8513 ATTTTGTTCCTCTATTCCATGGATTAACTATGGCTGATGATCTACAATCTGTTATAAAGA 8572 | | || ||||| ||| | || ||||| || || | || ||| | Sbjct 1545 TCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAA 1486 Query 8573 AGATGTTAGAAAATTCTCAAGGCCAAGGATCTAATGATTATGAGTATGTTTCAATAGCAA 8632 || ||||||| ||||| | || ||||| | ||||| | | || | || || | Sbjct 1485 AGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCCA 1426 Query 8633 ATCATATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTATTATGTTT 8692 | ||||| ||||| ||||||||||||||||||||||| ||| | || | || | Sbjct 1425 ACCATATCGATTACGAAAAATGGAATAATCACCAAAG---AGATGCTAACAACCCGGTGT 1369 Query 8693 TCAAAGTAATGGGCCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACATGAATTCT 8752 ||| || ||||| || | || || || |||||||| || || || || || |||||| Sbjct 1368 TCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTCT 1309 Query 8753 TTGAACAAAGTTTGATTTATTA 8774 ||||| | ||||| |||||||| Sbjct 1308 TTGAAAACAGTTTAATTTATTA 1287 >seq90283 Length=1560 Score = 109 bits (120), Expect = 5e-20 Identities = 247/363 (68%), Gaps = 10/363 (3%) Strand=Plus/Plus Query 8399 TCATTGGACTAAAAGCTAAAGAAAGAGAAATGAA-ACGGATTGGAAGATTCTTCTCTTTA 8457 |||| || || || | || ||| | ||| | || | ||| ||| |||| ||||| | Sbjct 237 TCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGA-GATTTTTCTCCCTC 295 Query 8458 ATGTCATGGGAACTCAGAGA--GTATTTTGTTTTTACTGAGTACCTTATTAAGGAATATT 8515 |||| |||| | | ||||| ||| || || | || |||||||| || ||||| | Sbjct 296 ATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGT 355 Query 8516 TTGTTCCTCTATTCCATGGATTAACTATGGCTGATGATCT-ACAATCTGTTATAAAGAAG 8574 |||||| || ||| ||||||||| ||||| || ||| | || | || | || ||| Sbjct 356 ATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAA-GTGACCAAAAAG 414 Query 8575 ATGTTAGAAAATTC--TCAAGGCCAAGGATCTAATGATTATGAGTATGTTTCAATAGCAA 8632 | | || ||||| |||| |||||||| |||| || | | |||| | |||| Sbjct 415 TTACTGGATAATTCCATCAAT--CAAGGATCAGATGACTACAACTCCATTTCTCTTGCAA 472 Query 8633 ATCATATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTATTATGTTT 8692 | ||||| || |||||||||||||| || ||||| ||| || | | || || | || Sbjct 473 ACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAGCTT 532 Query 8693 TCAAAGTAATGGGCCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACATGAATTCT 8752 | | ||| ||||| || | ||||| | | | | || ||| | |||||| || |||| Sbjct 533 TAAGAGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAACACACGAGTTCT 592 Query 8753 TTG 8755 ||| Sbjct 593 TTG 595 >seq49187 Length=20191 Score = 105 bits (116), Expect = 6e-19 Identities = 247/363 (68%), Gaps = 10/363 (3%) Strand=Plus/Plus Query 8353 TTCTTGCAAAAGATAAATGACTTTGGATT-AGATTTGAAGTCTCTCATCATTGGACTAAA 8411 |||||| ||| ||||| || | |||| | | | || | | || || || || || || Sbjct 6310 TTCTTGGAAAGCATAAACGAATCTGGACTCACAAGAGATGAC-CTGATAATCGGGCTCAA 6368 Query 8412 AGCTAAAGAAAGAGAAATGAA-ACGGATTGGAAGATTCTTCTCTTTAATGTCATGGGAAC 8470 || || ||||||||| | || | || | |||||||||||| | ||||| ||| | | Sbjct 6369 AGTAAAGGAAAGAGAAGTAAAGAAAGAG-GAAAGATTCTTCTCGCTCATGTCGTGGAATC 6427 Query 8471 TCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAATATTTTGTTCCTCTATTCC 8530 | || | || | || || ||| || | || ||||| | | ||| || || ||| Sbjct 6428 TGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGGAGTTCTATGTGCCCCTTTTCT 6487 Query 8531 ATGGATTAACTATGGCTGATGATCT-ACAATCTGTTATAAAGAAGATGTTAGAAAATTC- 8588 ||||| ||||||||||||||||| || | || | |||||| | |||| | ||| Sbjct 6488 CGGGATTGACTATGGCTGATGATCTGACTA-AGGTGACAAAGAAACTCCTAGATAGTTCG 6546 Query 8589 -TCAAGGCCAAGGATCTAATGATTATGAGTATGTTTCAATAGCAAATCATATTGATTATG 8647 |||| |||||| ||| | ||| | | |||| | |||||||| | ||||||| Sbjct 6547 ATCAA--CCAAGGGCAGAATTACTATAACTCCATTTCTCTGGCAAATCACGTAGATTATG 6604 Query 8648 AAAAATGGAATAATCACCAAAGGAAAGAATCAAATTATTATGTTTTCAAAGTAATGGGCC 8707 ||||||||||||| || || || || | ||| | ||| ||| ||||||||| | Sbjct 6605 AAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTGTGTTCCGAGTAATGGGTC 6664 Query 8708 AGT 8710 ||| Sbjct 6665 AGT 6667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41928900626564