Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_013955.1 Length=15764 Score E Sequences producing significant alignments: (Bits) Value seq133769 159 3e-35 seq283927 138 1e-28 seq49187 104 2e-18 seq176488 89.7 5e-14 >seq133769 Length=136818 Score = 159 bits (176), Expect = 3e-35 Identities = 393/587 (67%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 10993 ATTGGACTCAAAGCAAAAGAAAGAGAAGTAAAGTTAGTTGGAAGGtttttttCTTTAATG 11052 || ||||| || | |||||| ||||| || ||| || || | ||||| ||| | ||| Sbjct 122639 ATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATG 122580 Query 11053 ACATGGGAACTCAGAGAATATTTCGTATGTACAGAGTATATGATCAAACAGTTCTTCATT 11112 | ||| | | || |||| || || | ||||| || | || ||| |||| | | Sbjct 122579 TCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTA 122520 Query 11113 CCCCTGTTTCAAGGCCTGACTATGGCTGATGATATG-CAAGAGGTCCTTAAAAAATTACT 11171 || |||||| || || || ||||| || || | ||| || | | | ||| || || Sbjct 122519 CCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTT-CT 122461 Query 11172 AAGCAGTTCTAGTGGTCAAGGTTTAGACA-ATTACAACTTGATCTCAATTGCCAATCATT 11230 ||||||| |||||| | ||| | ||| | || | | ||||| ||| Sbjct 122460 CGACAGTTCTTTACATCAAGGACGA-ACAGACTACTCATCCATTTGTGTAGCCAACCATG 122402 Query 11231 TTGATTATGAAAAATGGAATAATCATCAAAGATATGCTTCAAATTGCCAT---GTGTTTA 11287 ||||||| |||| ||||| ||||||||| | || ||| | | || || || | Sbjct 122401 TTGATTACCAAAAGTGGAACAATCATCAACG---TGGTTCGGCTAACAATACTGTCTTCA 122345 Query 11288 AAGTCATGGGACAATGTTTTGGTTTACCCAATCTGTTCCTGCGTACACATGAATTCTTTG 11347 ||||||||| || | | | || |||| | || ||| || | || ||||| ||||| | Sbjct 122344 GAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCG 122285 Query 11348 AGAAAAG-CTTGATCTATTATGCCAATAGACCAGATTTGATGATGGTTCAAGGAGATTCT 11406 |||| || |||| |||| |||| ||||| ||||| ||| | ||||| ||| || Sbjct 122284 AGAACAGTCTTG-TCTACTATGGACCCAGACCGGATTTAATGGACATGCAAGGGGATACT 122226 Query 11407 CTCATTAATAGAACAGAGCATATGGTATGCTGGGAAGGTCAAAAAGGAGGATTAGAAGGC 11466 | |||| | | |||| || |||||||||||||| ||||||||||| | |||||| Sbjct 122225 TTGATTAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGC 122166 Query 11467 CTTAGACAAAAGGGATGGTCCGGACTTAATTTATTGGTGATTGAGCGTGAAGCAAAAATC 11526 || ||||||||||| ||| | | ||| | | || | ||| || ||||||| | Sbjct 122165 CTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAACC 122106 Query 11527 CGGAACACAAAGCTCAAAATTTTGGCACAAGGAGACAATCAAGTTAT 11573 || ||||| | |||| || || ||||| ||||| ||||| || Sbjct 122105 CGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGAT 122059 >seq283927 Length=152763 Score = 138 bits (152), Expect = 1e-28 Identities = 276/407 (68%), Gaps = 4/407 (1%) Strand=Plus/Minus Query 10960 AATGACGAAGGTTTGCCCAGGGATTGTCTCGCTATTGGACTCAAAGCAAAAGAAAGAGAA 11019 |||||| | || ||| ||| ||| |||| |||||| | |||| ||| ||| | ||| Sbjct 1689 AATGACAACGGATTGGACAGAGATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAA 1630 Query 11020 GTAAAGTTAGTTGGAAGGtttttttCTTTAATGACATGGGAACTCAGAGAATATTTCGTA 11079 | ||| | ||||| || || || ||||| | ||| | || | |||||||||| Sbjct 1629 ATCAAGAAGGAAGGAAGATTCTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTC 1570 Query 11080 TGTACAGAGTATATGATCAAACAGTTCTTCATTCCCCTGTTTCAAGGCCTGACTATGGCT 11139 |||||| | | | || | |||| ||| ||||| ||| ||| || || ||||| Sbjct 1569 ATTACAGAA-ACCTACTAAAGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCA 1511 Query 11140 GATGATATGCAAGAGGTCCTTAAAAAATTACTAAGCAGTTCTAGTGGTCAAGGTTTAGAC 11199 || || || || ||| ||||| || || || ||| || ||||| ||| Sbjct 1510 GACGACTTGATGGAAGTCGCAAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGAC 1451 Query 11200 AATTACAACTTGATCTCAATTGCCAATCATTTTGATTATGAAAAATGGAATAATCATCAA 11259 ||||| | ||||| | |||||||| ||| | ||||| ||||||||||||||||| ||| Sbjct 1450 GATTACCAATTGATTACCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAA 1391 Query 11260 AGATATGCTTCAAATTGCCATGTGTTTAAAGTCATGGGACAATGTTTTGGTTTACCCAAT 11319 ||| ||||| || || ||||| | || ||||| |||| || || | || || Sbjct 1390 AGAGATGCT---AACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAAC 1334 Query 11320 CTGTTCCTGCGTACACATGAATTCTTTGAGAAAAGCTTGATCTATTA 11366 |||| || || || |||||||||| || || || || ||||| Sbjct 1333 TTGTTAACTCGCACCCACAAATTCTTTGAAAACAGTTTAATTTATTA 1287 >seq49187 Length=20191 Score = 104 bits (114), Expect = 2e-18 Identities = 238/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 10993 ATTGGACTCAAAGCAAAAGAAAGAGAAGTAAAGTTAGTTGGAAGGtttttttCTTTAATG 11052 || || ||||||| ||| ||||||||||||||| || | ||| || || || | ||| Sbjct 6358 ATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCTTCTCGCTCATG 6417 Query 11053 ACATGGGAACTCAGAGAATATTTCGTATGTACAGAGTATATGATCAAACAGTTCTTCATT 11112 | ||| | || || |||| | ||| |||||| | | || || |||||| | Sbjct 6418 TCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGGAGTTCTATGTG 6477 Query 11113 CCCCTGTTTCAAGGCCTGACTATGGCTGATGATATGCAAGAGGTCCTTAAAAAATTACTA 11172 ||||| || || ||||||||||||||||| || |||| || ||| | ||| Sbjct 6478 CCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACAAAGAAACTCCTA 6537 Query 11173 AGCAGTTCTAGTGGTCAAGGTTTAGACAATTAC---AACTTGATCTCAATTGCCAATCAT 11229 ||||| | ||||| | |||||| |||| || || | || ||||| Sbjct 6538 GATAGTTCGATCAACCAAGG---GCAGAATTACTATAACTCCATTTCTCTGGCAAATCAC 6594 Query 11230 TTTGATTATGAAAAATGGAATAATCATCAAAGATATGCTTCAAATTGCCATGTGTTTAAA 11289 | |||||||||||||||||||| ||||| | | | ||| | | |||||| | Sbjct 6595 GTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTGTGTTCCGA 6654 Query 11290 GTCATGGGACAATGTTTTGGTTTACCCAATCTGTTCCTGCGTACACATGAATTCTTT 11346 || ||||| || | | ||||| || | |||||| | || || ||||| |||||| Sbjct 6655 GTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCATGAGTTCTTT 6711 >seq176488 Length=2532 Score = 89.7 bits (98), Expect = 5e-14 Identities = 345/537 (64%), Gaps = 9/537 (2%) Strand=Plus/Minus Query 10953 AAGA-ATAAATGACGAAGGTTTGCCCAGGGATTGTCTCGCT-ATTGGACTCAAAGCAAAA 11010 |||| || |||||| | || | |||| ||| | || | | ||||| | |||| || Sbjct 668 AAGAGATCAATGACAAGGGCCTCCCCAAGGAA-GACTTGATCATTGGCTTGAAAGGGAAG 610 Query 11011 GAAAGAGAAGTAAAGTTAGTTGGAAGGtttttttCTTTAATGACATGGGAACTCAGAGAA 11070 || |||||||||||| || | || || || | ||| | ||| | | || || Sbjct 609 GAGAGAGAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTCATGTCTTGGAAGTTAAGGCAA 550 Query 11071 TATTTCGTATGTACAGAGTATATGATCAAACAGTTCTTCATTCCCCTGTTTCAAGGCCTG 11130 || || || | ||||| || | || ||| | || | | | || ||||| | || || Sbjct 549 TACTTTGTCTCAACAGAACATCTTATAAAAGAATTGTACGTGCCACTGTTCAACGGACTC 490 Query 11131 ACTATGGCTGATGATATGCAAGAGGTCCTTAAAAAATTACTAAGCAGTTCTAGTGGTCAA 11190 || ||||| ||||| | | |||| || ||| | || ||||||| |||| Sbjct 489 ACGATGGCAGATGACCTCACAAAGGTTACAAAGAAACTTCTCGACAGTTCTTTACATCAA 430 Query 11191 GGTTTAGACAATTACAACTTGATCTCAATTGCCAATCATTTTGATTATGAAAAATGGAAT 11250 || | ||||| || || | | ||||| ||| ||||||| | ||||||||| Sbjct 429 GGACAAACTGATTACTCCTCCATTTGTGTGGCCAACCATGTTGATTACCAGAAATGGAAT 370 Query 11251 AATCATCAAAGATATGCTT---CAAATTGCCATGTGTTTAAAGTCATGGGACAATGTTTT 11307 || |||||| | || || | || || ||| || ||| ||||| || | | | Sbjct 369 AACCATCAACG---TGGTTTGGCCAACAACCCTGTCTTCCGAGTGATGGGTCAGTTTGTG 313 Query 11308 GGTTTACCCAATCTGTTCCTGCGTACACATGAATTCTTTGAGAAAAGCTTGATCTATTAT 11367 ||| | || | || ||| | | || || || ||||| ||||| || | ||||||||| Sbjct 312 GGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTTCGAGAACAGTCTCATCTATTAT 253 Query 11368 GCCAATAGACCAGATTTGATGATGGTTCAAGGAGATTCTCTCATTAATAGAACAGAGCAT 11427 | |||||| ||||| ||| || ||||| || | | || | || | || || Sbjct 252 GGACCTAGACCTGATTTAATGGAAGTACAAGGGGACACCTTGATCAGTAAAGCAAGTTAT 193 Query 11428 ATGGTATGCTGGGAAGGTCAAAAAGGAGGATTAGAAGGCCTTAGACAAAAGGGATGG 11484 || || |||||||| || ||||| || | || || | |||||||| || ||| Sbjct 192 CCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGG 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50111392974692