Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_017685.1 Length=14717 Score E Sequences producing significant alignments: (Bits) Value seq133769 84.2 2e-12 seq283927 80.6 2e-11 >seq133769 Length=136818 Score = 84.2 bits (92), Expect = 2e-12 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 10540 AAACTAGGACTCAAAATTAATATGGATGAGACTATCCAAAGTGCAGACTATATAAACTAT 10599 ||||| ||| | ||| || | |||||||| || ||||| | || | | | |||| Sbjct 121943 AAACTGGGATTGCTAATCAACAGAGATGAGACCATGCAAAGCACTGATTTTCTGTCCTAT 121884 Query 10600 GGCAAGGTTCCAATTTACAGAGGAAACATATTAGGGTTGAATCAAAAAAGATGGTCAAGG 10659 |||||||| ||| | | |||||||||||| || || | ||| ||||||||| | Sbjct 121883 GGCAAGGTACCAGTGTTCAGAGGAAACATCCTACCTTTAGAGGCAAAGAGATGGTCACGA 121824 Query 10660 GTTAATTATGTCAGCAATGATCAATTACCTTCTT 10693 |||| | || | |||||||||||||||||||| Sbjct 121823 GTTACATGCGTAACCAATGATCAATTACCTTCTT 121790 >seq283927 Length=152763 Score = 80.6 bits (88), Expect = 2e-11 Identities = 235/360 (65%), Gaps = 4/360 (1%) Strand=Plus/Minus Query 9859 AAAGAAAGAGAATTAAAAATTGATGGCAGATTCTTCTCATTAATGTCATATGATATGAGA 9918 || ||| | ||| | || | || || ||||||||||| ||||||| | || | | Sbjct 1641 AAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTCCCTAATGTCCTGGAATCTTCAA 1582 Query 9919 GATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAAGGA 9978 | ||||| || || || || | || |||| ||| ||| | || |||| |||| Sbjct 1581 CAATATTTCGTCATTACAGA-AACCTACTAAAGGAATTCTACATACCCCTATTTGCAGGA 1523 Query 9979 TTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAAGGA 10038 | || ||||| || ||| | || | ||||| ||||| | || ||| Sbjct 1522 CTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAAGTTGTTAGACAATTCACCGGGA 1463 Query 10039 CAGGGCCTGATTGATTACAAAGAGATTACGATCGCTAATCATTTGGATTATGAGAAGTGG 10098 || || | | |||||| || |||||| || || || ||| | ||||| || || ||| Sbjct 1462 CAAGGGCAGGACGATTACCAATTGATTACCATTGCCAACCATATCGATTACGAAAAATGG 1403 Query 10099 AATAACTATCAAAGAAAAGAGTCCAATGGCCCTGTGTTCCGAGTCATGGGTCAATTTTTG 10158 ||||| | ||||| ||| | || ||| |||||| | || ||||| ||||| ||| Sbjct 1402 AATAATCACCAAAG---AGATGCTAACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTG 1346 Query 10159 GGCTTACCTAATTTAATAGAAAGAACTCATGAGTTTTTTGAAAAAAGTCTTATTTATTAC 10218 || | || || || || | || || | || |||||||| ||| | ||||||||| Sbjct 1345 GGACTGCCAAACTTGTTAACTCGCACCCACAAATTCTTTGAAAACAGTTTAATTTATTAC 1286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46775306725280