Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_017714.1 Length=15867 Score E Sequences producing significant alignments: (Bits) Value seq133769 82.4 8e-12 >seq133769 Length=136818 Score = 82.4 bits (90), Expect = 8e-12 Identities = 235/355 (66%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 11246 TAGCGAATAATATTGACTATGAGAAGTGGAATAATTATCAAAGATATGATTCA---AATA 11302 |||| || || |||| || | |||||||| ||| ||||| | || ||| || | Sbjct 122413 TAGCCAACCATGTTGATTACCAAAAGTGGAACAATCATCAACG---TGGTTCGGCTAACA 122357 Query 11303 GTGCAATTTTCACTGTCATGGGACAATTTTTAGGGTATCCAAAGTTAATAGCAAGAACTC 11362 | | | |||| |||||||| || ||| | || ||| | | | | ||||| | Sbjct 122356 ATACTGTCTTCAGAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGC 122297 Query 11363 ATGAGTTTTTTGAGAAAAGCCTGATCTACTATAATCAGAGACCAGATCTGATGAGAGTTG 11422 ||||||| || ||||| || || |||||||| | ||||| ||| | ||| || || Sbjct 122296 ATGAGTTCTTCGAGAACAGTCTTGTCTACTATGGACCCAGACCGGATTTAATG-GACATG 122238 Query 11423 TT-GGAAATGAGGTAGTGAGCATGGACAACAAAAAAGT-TGCTTGGGAGGGACAAAAGGG 11480 || || | | |||| | || | || |||| |||| |||||||| || Sbjct 122237 CAAGGGGATACTTTGATTAGCAAAGCAGACTATCCCGTATGCT-GGGAAGGACAAAAAGG 122179 Query 11481 GGGATTAGAAGGTCTGAGACAAAAAGGGTGGAGTGTAGTAAATCTTCTAATGATTGAGAG 11540 || | ||||| || |||||||| |||||||| | ||||||||||| | | | | Sbjct 122178 AGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCG 122119 Query 11541 AGAAGTAAAAATACGAAATACATTGGTAAAAGTGTTAGCGCAGGGAGACAATCAA 11595 ||| | ||||| || || || || || ||| |||||||| || ||||| ||| Sbjct 122118 AGAGGCAAAAACCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAA 122064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50439584840680