Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= NC_020803.1
Length=11487
Score E
Sequences producing significant alignments: (Bits) Value
seq283927 145 6e-31
seq90283 134 1e-27
seq225232 120 2e-23
seq176488 113 3e-21
seq133769 111 1e-20
seq219500 107 1e-19
>seq283927
Length=152763
Score = 145 bits (160), Expect = 6e-31
Identities = 393/597 (66%), Gaps = 16/597 (3%)
Strand=Plus/Minus
Query 6636 TCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTAAAAAAGGCAGGACGGTTCTTCTC 6695
||| ||||| || |||||||| || ||| ||||| | || |||| |||| | ||||||||
Sbjct 1663 TCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTC 1604
Query 6696 TCTGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAGAATACTTAATCAAGACACA 6755
|| ||||| ||| | | | ||||||| || || |||||| || || | ||| |
Sbjct 1603 CCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAATT 1545
Query 6756 CTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATATGACGGAAGTTGTAAAGAA 6815
||| | ||| |||| ||| | ||||||||||| || ||| |||||| | ||| ||
Sbjct 1544 CTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAA 1485
Query 6816 AATGCTAGAAAGGAGTCAAGGG--CAGGGAGAAGATGACTACGAGCACATCAGCATTGCC 6873
|| |||| | | ||| || || || | || || ||| | || | |||||||
Sbjct 1484 GTTGTTAGACA--ATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCC 1427
Query 6874 AACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAGGAATCAAATGGGCCTGTG 6933
||||| || || || || || ||||||||||| || ||| || | || || |||
Sbjct 1426 AACCATATCGATTACGAAAAATGGAATAATCACCAAAGA---GATGCTAACAACCCGGTG 1370
Query 6934 TTCAGAGTCATGGGACAATTCCTAGGATATCCCAGTTTGATCGAAAAAACTCATGACTTT 6993
||||| || ||||| |||||| | ||| || | ||| | || || | ||
Sbjct 1369 TTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTC 1310
Query 6994 TTTCAAGACAGCTTGATTTATTACAATGGGA----GACCAGACCTGATGGAAGTGAGGGG 7049
||| || |||| || ||||||||| ||| | || ||||||||||| | | |||
Sbjct 1309 TTTGAAAACAGTTTAATTTATTAC----GGACCACGTCCGGACCTGATGGAGGCCAAGGG 1254
Query 7050 GAATGAATTATTGAACAAAACAGACAAGCTTGTCTGTTGGGATGGTCAGGCTGGAGGACT 7109
| || |||| | || | ||| || ||| |||| ||| || |||||
Sbjct 1253 AGACACGCTAGAGAACCGAGGCCACTTCCCTGTTTGCTGGAATGGCCAGTTGGGTGGACT 1194
Query 7110 GGAAGGACTGAGACAAAAGGGATGGAGCATATTGAATCTACTTGTGATTCAGAGAGAGTC 7169
||| || || | || ||||| ||| | | | |||| | | | | | |||||
Sbjct 1193 GGAGGGTCTCCGTCAGAAGGGGTGGGGTGTGGTTTATCTTCCAGCGTTACTTCGAGAGGA 1134
Query 7170 CAAAATCAGAAACACCAAAGTGCAAACATTGGCTCAGGGAGACAATCAAGTTGTTTG 7226
|||| | | ||||| || | || ||||| || || |||||||| || |||||
Sbjct 1133 AAAAACCCGGAACACTCTTGTACGCACGTTGGCCCAAGGGGACAATCAGGTAGTTTG 1077
>seq90283
Length=1560
Score = 134 bits (148), Expect = 1e-27
Identities = 407/620 (66%), Gaps = 18/620 (3%)
Strand=Plus/Plus
Query 6619 GGACTACCCAAAGAGTCTCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTAAAAAAG 6678
||||| || ||||| ||| ||||||| | || ||||| ||||| ||| | || |||
Sbjct 215 GGACTCCCTAAAGAAGACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAG 274
Query 6679 GCAGGACGGTTCTTCTCTCTGATGTCATGGGAATTGAGAGAA--TATTTTGTAATAACAG 6736
| || | || ||||| || |||| |||| | || ||||| || || || || |
Sbjct 275 GAGGGGAGATTTTTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCG 334
Query 6737 AATACTTAATCAAGACACACTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATA 6796
| ||| | |||||| | ||||| || | ||| || ||||| ||||| || |||
Sbjct 335 AGTACCTCATCAAGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATT 394
Query 6797 TGACGGAAGTTGTAAAGAAAATGCTAGAAAGGAG--TCAAGGGCAGGGAGAAGATGACTA 6854
|||| |||| || || | || || | |||| || ||| |||||||||
Sbjct 395 TGACCAAAGTGACCAAAAAGTTACTGGATAATTCCATCAAT--CAAGGATCAGATGACTA 452
Query 6855 CGAGCACATCAGCATTGCCAACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAA 6914
| | ||| |||| ||||| || |||||||| || ||||| || || |||||
Sbjct 453 CAACTCCATTTCTCTTGCAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGG 512
Query 6915 GGAATCAAATGGGCCTGTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAG-TTTGA 6973
| | | || | || | || |||||||||||||||||| | || | | | || |||
Sbjct 513 AGCAGCTAACGATCCAGCTTTAAGAGTCATGGGACAATTCATCGG-TTTACTAGAGTTGT 571
Query 6974 TCGAAAAAACTCATGACTTTTTTCAAGACAGCTTGATTTATTACAATGGGA----GACCA 7029
| | |||| || || || ||| || |||| | | || ||| ||| | ||
Sbjct 572 TTGTTCAAACACACGAGTTCTTTGGAGGCAGCCTTGTCTACTAC----GGACCCCGTCCT 627
Query 7030 GACCTGATGGAAGT-GAGGGGGAATGAATTATTGAACAAAACAGACAAGCTTGTCTGTTG 7088
||| | |||||||| || || || | | || ||||||| || | |||||| ||
Sbjct 628 GACTTAATGGAAGTAGATGGAGAGT-CACTACGGAACAAAGGGAACTTCCCTGTCTGCTG 686
Query 7089 GGATGGTCAGGCTGGAGGACTGGAAGGACTGAGACAAAAGGGATGGAGCATATTGAATCT 7148
| | | ||| ||||| ||||||| || ||||||| || |||||||| | |||||
Sbjct 687 GAAGAGACAGCTCGGAGGCTTGGAAGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCT 746
Query 7149 ACTTGTGATTCAGAGAGAGTCCAAAATCAGAAACACCAAAGTGCAAACATTGGCTCAGGG 7208
| | || | | | || |||| | |||||||||| || |||| | | ||||
Sbjct 747 ATTGGTCCTCCCGCACGAAGCCAAGAGTAGAAACACCATGGTTAAAACCCTCGTGAAGGG 806
Query 7209 AGACAATCAAGTTGTTTGCA 7228
|||||| ||||| | ||||
Sbjct 807 AGACAACCAAGTAATATGCA 826
>seq225232
Length=278362
Score = 120 bits (132), Expect = 2e-23
Identities = 251/367 (68%), Gaps = 18/367 (5%)
Strand=Plus/Plus
Query 6871 GCCAACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAGGAATCAAATGGGCCT 6930
|||||||| | ||||| ||||| || || ||||| |||||| ||| |||| | |||
Sbjct 38954 GCCAACCATGTGGACTACGAGAAATGAAACAATCACCAGAGAGCCGAAGCAAACGATCCT 39013
Query 6931 GTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAGTTTGATC-GAAAAAACTCATGA 6989
|| || | |||||| | ||||| |||| | ||||| | | | || || ||||||
Sbjct 39014 GTCTTTACCATCATGGTAAAATTCTTAGG-TCTCCCAAATGCCTTTGCAAGAATTCATGA 39072
Query 6990 CTTTTTTCAAGACAGCTTGATTTATTACAATGGG---AGACCAGACCTGATGGAAGTGAG 7046
||||| ||| ||||| | | || || ||| || || || |||||||||||| |
Sbjct 39073 GTTTTTCCAACACAGCCTTGTGTACTA---TGGACCAAGGCCTGATCTGATGGAAGTG-G 39128
Query 7047 GGGGAATGAATTATTGAACAAAACAGACAAGCTT-----GTCTGTTGGGATGGTCAGGCT 7101
||| || | || ||||||| | ||| || |||||||| || |||
Sbjct 39129 TTGGA--GATTCCCTG--CAAAACAAGGGATCTTTCCCCGTGTGTTGGGAGGGCCAGTTA 39184
Query 7102 GGAGGACTGGAAGGACTGAGACAAAAGGGATGGAGCATATTGAATCTACTTGTGATTCAG 7161
|| ||||||||||| | || |||| ||||||||||| | || || | || | |
Sbjct 39185 GGGGGACTGGAAGGGTTAAGGCAAAGAGGATGGAGCATCGTCAACCTTTTGGTTTTACTA 39244
Query 7162 AGAGAGTCCAAAATCAGAAACACCAAAGTGCAAACATTGGCTCAGGGAGACAATCAAGTT 7221
|||||| |||||| | |||||| || | || ||||| || ||||| |||||||||
Sbjct 39245 AGAGAGGCCAAAACTCGCAACACCCTGGTAAAGACCTTGGCCCAAGGAGATAATCAAGTT 39304
Query 7222 GTTTGCA 7228
| ||||
Sbjct 39305 ATCTGCA 39311
>seq176488
Length=2532
Score = 113 bits (124), Expect = 3e-21
Identities = 405/617 (66%), Gaps = 30/617 (5%)
Strand=Plus/Minus
Query 6619 GGACTACCCAAAGA-GTCTCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTAAA-AA 6676
|| || ||||| || | || ||||||| ||||| |||||||| || | ||| |||| ||
Sbjct 651 GGCCTCCCCAAGGAAGACT-TGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAA 593
Query 6677 AGGCAGGACGGTTCTTCTCTCTGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAG 6736
|| ||| | |||||||| || ||||| ||| | || || |||| ||||| |||||
Sbjct 592 AGAGAGG-CAATTCTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAG 534
Query 6737 AATA-CTTAATCAAGACACACTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGAT 6795
|| | |||| |||| | || ||||| | ||||| || | || |||||||||||
Sbjct 533 AACATCTTATAAAAGA-ATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGAC 475
Query 6796 ATGACGGAAGTTGTAAAGAAAATGCTAGAAAGGAGTCAAGGGCAGGGAGAAGATGACTAC 6855
| || | ||| ||||||| | || || || | | || ||| || ||| |||
Sbjct 474 CTCACAAAGGTTACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTAC 415
Query 6856 GAGCACATCAGCATTGCCAACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAG 6915
||| | | |||||||| |||| || |||| |||||||| ||||| | |
Sbjct 414 TCCTCCATTTGTGTGGCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACG--TG 357
Query 6916 GAAT--CAAATGGGCCTGTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAG---TT 6970
| | | || ||||| ||| |||| ||||| || || | || | | |||| ||
Sbjct 356 GTTTGGCCAACAACCCTGTCTTCCGAGTGATGGGTCAGTTTGT-GGGTCTGCCAGAACTT 298
Query 6971 TGATCGAAAAAACTCATGACTTTTTTCAAGACAGCTTGATTTATTACAATGG---GAGAC 7027
| ||| | ||| || || || || | |||| | || |||| |||| ||||
Sbjct 297 T--TCGTCAGAACGCACGAGTTCTTCGAGAACAGTCTCATCTATT---ATGGACCTAGAC 243
Query 7028 CAGACCTGATGGAAGTGAGGGGGAATGAATTATTGAACAAAACAGACAAG----CTTGTC 7083
| || | |||||||| ||| || |||| || | || |||| | ||||
Sbjct 242 CTGATTTAATGGAAGTACAAGGG---GACACCTTGATCAGTAAAG-CAAGTTATCCTGTC 187
Query 7084 TGTTGGGATGGTCAGGCTGGAGGACTGGAAGGACTGAGACAAAAGGGATGGAGCATATTG 7143
|||||||| || ||| || || || || || |||||||||| || ||||| || ||
Sbjct 186 TGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTG 127
Query 7144 AATCTACTTGTGATTCAGAGAGAGTCCAAAATCAGAAACACCAAAGTGCAAACATTGGCT 7203
||| | || ||| | | |||| | || | | |||| ||| || | || | ||
Sbjct 126 AATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCA 67
Query 7204 CAGGGAGACAATCAAGT 7220
||||| ||||| || ||
Sbjct 66 CAGGGGGACAACCAGGT 50
>seq133769
Length=136818
Score = 111 bits (122), Expect = 1e-20
Identities = 406/622 (65%), Gaps = 24/622 (4%)
Strand=Plus/Minus
Query 6619 GGACTACCCAAAGA-GTCTCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTAAAAAA 6677
|| || |||| ||| | || | ||||| || | || || ||||| | || | || ||
Sbjct 122663 GGCCTCCCCAGAGAAGACT-TAATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAA 122605
Query 6678 GGCAGGACGGTTCTTCTCTCTGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAGA 6737
| || || || |||||||| ||||| ||| | || || |||| ||||| ||||||
Sbjct 122604 AGAGGGTCGATTTTTCTCTCTCATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGA 122545
Query 6738 ATACTTAATCAAGACACACTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATAT 6797
| | | || || ||||| || | || | || | || ||||| || || |
Sbjct 122544 ACATCTCATAAAAGAGTTGTATGTACCACTGTTTAGTGGACTTACAATGGCGGACGACCT 122485
Query 6798 GACGGAAGTTGTAAAGAAAATGCTAGAAAGGAGTCAAGGGCAGGGA-GAAGATGACTACG 6856
|| ||||| ||||||| | || || || | | || ||| ||| | ||||||
Sbjct 122484 CACAAAAGTTACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGACGAACA-GACTACT 122426
Query 6857 AGCACATCAGCATTGCCAACCACATTGACTATGAGAAGTGGAATAATCATCA--GAGAAA 6914
||| | | |||||||| |||| || | |||||||| |||||||| | |
Sbjct 122425 CATCCATTTGTGTAGCCAACCATGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTT 122366
Query 6915 GGAATCA-AATGGGCCTGTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAG---TT 6970
| | | ||| |||| |||||||||||||| || || | ||| | |||| ||
Sbjct 122365 CGGCTAACAATA---CTGTCTTCAGAGTCATGGGTCAGTTTGTGGGAC-TACCAGAACTT 122310
Query 6971 TGATCGAAAAAACTCATGACTTTTTTCAAGACAG-CTTGATTTATTACAATGGG---AGA 7026
| ||| | ||| ||||| || || | |||| |||| | || |||| |||
Sbjct 122309 T--TCGTGAGAACGCATGAGTTCTTCGAGAACAGTCTTGTCT----ACTATGGACCCAGA 122256
Query 7027 CCAGACCTGATGGAAGTGAGGGGGAATGAATTATTGAACAAAACAGACAAGCTTGTCTGT 7086
|| || | ||||| || ||| || || | | |||| ||||| | | || ||
Sbjct 122255 CCGGATTTAATGGACATGCAAGGGGATACTTTGATTAGCAAAGCAGACTATCCCGTATGC 122196
Query 7087 TGGGATGGTCAGGCTGGAGGACTGGAAGGACTGAGACAAAAGGGATGGAGCATATTGAAT 7146
||||| || || ||||| || ||||| || ||||||||||| |||||||| | |||
Sbjct 122195 TGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAGCATTGTAAAT 122136
Query 7147 CTACTTGTGATTCAGAGAGAGTCCAAAATCAGAAACACCAAAGTGCAAACATTGGCTCAG 7206
|| || || | | | ||||| | |||| | | ||||| ||| ||||||| || ||
Sbjct 122135 CTTCTCGTACTCCTGCGAGAGGCAAAAACCCGTAACACTTTAGTTAAAACATTAGCGCAA 122076
Query 7207 GGAGACAATCAAGTTGTTTGCA 7228
|| ||||| ||||| | ||||
Sbjct 122075 GGGGACAACCAAGTGATCTGCA 122054
>seq219500
Length=51628
Score = 107 bits (118), Expect = 1e-19
Identities = 128/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 7387 GGAACAAACAAATTGGGATTGTTGATAAACAATGATGAGACAATACAGTCCGCAGATTTT 7446
|| ||||| || || ||||| |||| |||| ||||||||||| ||| | |||| |||
Sbjct 6318 GGGACAAAGAAGTTAGGATTACTGATCAACAGAGATGAGACAATGCAGAGCACAGACTTT 6259
Query 7447 CTGACATACGGGAAAGTGCCAATCTTCCGGGGCAATATCAGATGCTTGGAGACTAAACGG 7506
|| | || || ||||| || |||| | || |||||| | |||| | |||||
Sbjct 6258 TTGTCTTATGGTAAAGTACCTGTCTTTAGAGGTAATATCTTACCACTGGAAGCAAAACGA 6199
Query 7507 TGGTCTAGAGTGACTTGTGTGACAAATGATCAGCTTCCCTCGTTGGCGAATGTG 7560
||||| ||||| || || || || |||||||||||||| || ||| | ||||||
Sbjct 6198 TGGTCCAGAGTCACATGCGTCACCAATGATCAGCTTCCTTCTTTGTCTAATGTG 6145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 36490882095888
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