Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_020803.1 Length=11487 Score E Sequences producing significant alignments: (Bits) Value seq283927 145 6e-31 seq90283 134 1e-27 seq225232 120 2e-23 seq176488 113 3e-21 seq133769 111 1e-20 seq219500 107 1e-19 >seq283927 Length=152763 Score = 145 bits (160), Expect = 6e-31 Identities = 393/597 (66%), Gaps = 16/597 (3%) Strand=Plus/Minus Query 6636 TCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTAAAAAAGGCAGGACGGTTCTTCTC 6695 ||| ||||| || |||||||| || ||| ||||| | || |||| |||| | |||||||| Sbjct 1663 TCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTC 1604 Query 6696 TCTGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAGAATACTTAATCAAGACACA 6755 || ||||| ||| | | | ||||||| || || |||||| || || | ||| | Sbjct 1603 CCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAATT 1545 Query 6756 CTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATATGACGGAAGTTGTAAAGAA 6815 ||| | ||| |||| ||| | ||||||||||| || ||| |||||| | ||| || Sbjct 1544 CTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAA 1485 Query 6816 AATGCTAGAAAGGAGTCAAGGG--CAGGGAGAAGATGACTACGAGCACATCAGCATTGCC 6873 || |||| | | ||| || || || | || || ||| | || | ||||||| Sbjct 1484 GTTGTTAGACA--ATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCC 1427 Query 6874 AACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAGGAATCAAATGGGCCTGTG 6933 ||||| || || || || || ||||||||||| || ||| || | || || ||| Sbjct 1426 AACCATATCGATTACGAAAAATGGAATAATCACCAAAGA---GATGCTAACAACCCGGTG 1370 Query 6934 TTCAGAGTCATGGGACAATTCCTAGGATATCCCAGTTTGATCGAAAAAACTCATGACTTT 6993 ||||| || ||||| |||||| | ||| || | ||| | || || | || Sbjct 1369 TTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTC 1310 Query 6994 TTTCAAGACAGCTTGATTTATTACAATGGGA----GACCAGACCTGATGGAAGTGAGGGG 7049 ||| || |||| || ||||||||| ||| | || ||||||||||| | | ||| Sbjct 1309 TTTGAAAACAGTTTAATTTATTAC----GGACCACGTCCGGACCTGATGGAGGCCAAGGG 1254 Query 7050 GAATGAATTATTGAACAAAACAGACAAGCTTGTCTGTTGGGATGGTCAGGCTGGAGGACT 7109 | || |||| | || | ||| || ||| |||| ||| || ||||| Sbjct 1253 AGACACGCTAGAGAACCGAGGCCACTTCCCTGTTTGCTGGAATGGCCAGTTGGGTGGACT 1194 Query 7110 GGAAGGACTGAGACAAAAGGGATGGAGCATATTGAATCTACTTGTGATTCAGAGAGAGTC 7169 ||| || || | || ||||| ||| | | | |||| | | | | | ||||| Sbjct 1193 GGAGGGTCTCCGTCAGAAGGGGTGGGGTGTGGTTTATCTTCCAGCGTTACTTCGAGAGGA 1134 Query 7170 CAAAATCAGAAACACCAAAGTGCAAACATTGGCTCAGGGAGACAATCAAGTTGTTTG 7226 |||| | | ||||| || | || ||||| || || |||||||| || ||||| Sbjct 1133 AAAAACCCGGAACACTCTTGTACGCACGTTGGCCCAAGGGGACAATCAGGTAGTTTG 1077 >seq90283 Length=1560 Score = 134 bits (148), Expect = 1e-27 Identities = 407/620 (66%), Gaps = 18/620 (3%) Strand=Plus/Plus Query 6619 GGACTACCCAAAGAGTCTCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTAAAAAAG 6678 ||||| || ||||| ||| ||||||| | || ||||| ||||| ||| | || ||| Sbjct 215 GGACTCCCTAAAGAAGACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAG 274 Query 6679 GCAGGACGGTTCTTCTCTCTGATGTCATGGGAATTGAGAGAA--TATTTTGTAATAACAG 6736 | || | || ||||| || |||| |||| | || ||||| || || || || | Sbjct 275 GAGGGGAGATTTTTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCG 334 Query 6737 AATACTTAATCAAGACACACTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATA 6796 | ||| | |||||| | ||||| || | ||| || ||||| ||||| || ||| Sbjct 335 AGTACCTCATCAAGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATT 394 Query 6797 TGACGGAAGTTGTAAAGAAAATGCTAGAAAGGAG--TCAAGGGCAGGGAGAAGATGACTA 6854 |||| |||| || || | || || | |||| || ||| ||||||||| Sbjct 395 TGACCAAAGTGACCAAAAAGTTACTGGATAATTCCATCAAT--CAAGGATCAGATGACTA 452 Query 6855 CGAGCACATCAGCATTGCCAACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAA 6914 | | ||| |||| ||||| || |||||||| || ||||| || || ||||| Sbjct 453 CAACTCCATTTCTCTTGCAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGG 512 Query 6915 GGAATCAAATGGGCCTGTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAG-TTTGA 6973 | | | || | || | || |||||||||||||||||| | || | | | || ||| Sbjct 513 AGCAGCTAACGATCCAGCTTTAAGAGTCATGGGACAATTCATCGG-TTTACTAGAGTTGT 571 Query 6974 TCGAAAAAACTCATGACTTTTTTCAAGACAGCTTGATTTATTACAATGGGA----GACCA 7029 | | |||| || || || ||| || |||| | | || ||| ||| | || Sbjct 572 TTGTTCAAACACACGAGTTCTTTGGAGGCAGCCTTGTCTACTAC----GGACCCCGTCCT 627 Query 7030 GACCTGATGGAAGT-GAGGGGGAATGAATTATTGAACAAAACAGACAAGCTTGTCTGTTG 7088 ||| | |||||||| || || || | | || ||||||| || | |||||| || Sbjct 628 GACTTAATGGAAGTAGATGGAGAGT-CACTACGGAACAAAGGGAACTTCCCTGTCTGCTG 686 Query 7089 GGATGGTCAGGCTGGAGGACTGGAAGGACTGAGACAAAAGGGATGGAGCATATTGAATCT 7148 | | | ||| ||||| ||||||| || ||||||| || |||||||| | ||||| Sbjct 687 GAAGAGACAGCTCGGAGGCTTGGAAGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCT 746 Query 7149 ACTTGTGATTCAGAGAGAGTCCAAAATCAGAAACACCAAAGTGCAAACATTGGCTCAGGG 7208 | | || | | | || |||| | |||||||||| || |||| | | |||| Sbjct 747 ATTGGTCCTCCCGCACGAAGCCAAGAGTAGAAACACCATGGTTAAAACCCTCGTGAAGGG 806 Query 7209 AGACAATCAAGTTGTTTGCA 7228 |||||| ||||| | |||| Sbjct 807 AGACAACCAAGTAATATGCA 826 >seq225232 Length=278362 Score = 120 bits (132), Expect = 2e-23 Identities = 251/367 (68%), Gaps = 18/367 (5%) Strand=Plus/Plus Query 6871 GCCAACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAGGAATCAAATGGGCCT 6930 |||||||| | ||||| ||||| || || ||||| |||||| ||| |||| | ||| Sbjct 38954 GCCAACCATGTGGACTACGAGAAATGAAACAATCACCAGAGAGCCGAAGCAAACGATCCT 39013 Query 6931 GTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAGTTTGATC-GAAAAAACTCATGA 6989 || || | |||||| | ||||| |||| | ||||| | | | || || |||||| Sbjct 39014 GTCTTTACCATCATGGTAAAATTCTTAGG-TCTCCCAAATGCCTTTGCAAGAATTCATGA 39072 Query 6990 CTTTTTTCAAGACAGCTTGATTTATTACAATGGG---AGACCAGACCTGATGGAAGTGAG 7046 ||||| ||| ||||| | | || || ||| || || || |||||||||||| | Sbjct 39073 GTTTTTCCAACACAGCCTTGTGTACTA---TGGACCAAGGCCTGATCTGATGGAAGTG-G 39128 Query 7047 GGGGAATGAATTATTGAACAAAACAGACAAGCTT-----GTCTGTTGGGATGGTCAGGCT 7101 ||| || | || ||||||| | ||| || |||||||| || ||| Sbjct 39129 TTGGA--GATTCCCTG--CAAAACAAGGGATCTTTCCCCGTGTGTTGGGAGGGCCAGTTA 39184 Query 7102 GGAGGACTGGAAGGACTGAGACAAAAGGGATGGAGCATATTGAATCTACTTGTGATTCAG 7161 || ||||||||||| | || |||| ||||||||||| | || || | || | | Sbjct 39185 GGGGGACTGGAAGGGTTAAGGCAAAGAGGATGGAGCATCGTCAACCTTTTGGTTTTACTA 39244 Query 7162 AGAGAGTCCAAAATCAGAAACACCAAAGTGCAAACATTGGCTCAGGGAGACAATCAAGTT 7221 |||||| |||||| | |||||| || | || ||||| || ||||| ||||||||| Sbjct 39245 AGAGAGGCCAAAACTCGCAACACCCTGGTAAAGACCTTGGCCCAAGGAGATAATCAAGTT 39304 Query 7222 GTTTGCA 7228 | |||| Sbjct 39305 ATCTGCA 39311 >seq176488 Length=2532 Score = 113 bits (124), Expect = 3e-21 Identities = 405/617 (66%), Gaps = 30/617 (5%) Strand=Plus/Minus Query 6619 GGACTACCCAAAGA-GTCTCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTAAA-AA 6676 || || ||||| || | || ||||||| ||||| |||||||| || | ||| |||| || Sbjct 651 GGCCTCCCCAAGGAAGACT-TGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAA 593 Query 6677 AGGCAGGACGGTTCTTCTCTCTGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAG 6736 || ||| | |||||||| || ||||| ||| | || || |||| ||||| ||||| Sbjct 592 AGAGAGG-CAATTCTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAG 534 Query 6737 AATA-CTTAATCAAGACACACTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGAT 6795 || | |||| |||| | || ||||| | ||||| || | || ||||||||||| Sbjct 533 AACATCTTATAAAAGA-ATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGAC 475 Query 6796 ATGACGGAAGTTGTAAAGAAAATGCTAGAAAGGAGTCAAGGGCAGGGAGAAGATGACTAC 6855 | || | ||| ||||||| | || || || | | || ||| || ||| ||| Sbjct 474 CTCACAAAGGTTACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTAC 415 Query 6856 GAGCACATCAGCATTGCCAACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAG 6915 ||| | | |||||||| |||| || |||| |||||||| ||||| | | Sbjct 414 TCCTCCATTTGTGTGGCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACG--TG 357 Query 6916 GAAT--CAAATGGGCCTGTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAG---TT 6970 | | | || ||||| ||| |||| ||||| || || | || | | |||| || Sbjct 356 GTTTGGCCAACAACCCTGTCTTCCGAGTGATGGGTCAGTTTGT-GGGTCTGCCAGAACTT 298 Query 6971 TGATCGAAAAAACTCATGACTTTTTTCAAGACAGCTTGATTTATTACAATGG---GAGAC 7027 | ||| | ||| || || || || | |||| | || |||| |||| |||| Sbjct 297 T--TCGTCAGAACGCACGAGTTCTTCGAGAACAGTCTCATCTATT---ATGGACCTAGAC 243 Query 7028 CAGACCTGATGGAAGTGAGGGGGAATGAATTATTGAACAAAACAGACAAG----CTTGTC 7083 | || | |||||||| ||| || |||| || | || |||| | |||| Sbjct 242 CTGATTTAATGGAAGTACAAGGG---GACACCTTGATCAGTAAAG-CAAGTTATCCTGTC 187 Query 7084 TGTTGGGATGGTCAGGCTGGAGGACTGGAAGGACTGAGACAAAAGGGATGGAGCATATTG 7143 |||||||| || ||| || || || || || |||||||||| || ||||| || || Sbjct 186 TGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTG 127 Query 7144 AATCTACTTGTGATTCAGAGAGAGTCCAAAATCAGAAACACCAAAGTGCAAACATTGGCT 7203 ||| | || ||| | | |||| | || | | |||| ||| || | || | || Sbjct 126 AATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCA 67 Query 7204 CAGGGAGACAATCAAGT 7220 ||||| ||||| || || Sbjct 66 CAGGGGGACAACCAGGT 50 >seq133769 Length=136818 Score = 111 bits (122), Expect = 1e-20 Identities = 406/622 (65%), Gaps = 24/622 (4%) Strand=Plus/Minus Query 6619 GGACTACCCAAAGA-GTCTCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTAAAAAA 6677 || || |||| ||| | || | ||||| || | || || ||||| | || | || || Sbjct 122663 GGCCTCCCCAGAGAAGACT-TAATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAA 122605 Query 6678 GGCAGGACGGTTCTTCTCTCTGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAGA 6737 | || || || |||||||| ||||| ||| | || || |||| ||||| |||||| Sbjct 122604 AGAGGGTCGATTTTTCTCTCTCATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGA 122545 Query 6738 ATACTTAATCAAGACACACTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATAT 6797 | | | || || ||||| || | || | || | || ||||| || || | Sbjct 122544 ACATCTCATAAAAGAGTTGTATGTACCACTGTTTAGTGGACTTACAATGGCGGACGACCT 122485 Query 6798 GACGGAAGTTGTAAAGAAAATGCTAGAAAGGAGTCAAGGGCAGGGA-GAAGATGACTACG 6856 || ||||| ||||||| | || || || | | || ||| ||| | |||||| Sbjct 122484 CACAAAAGTTACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGACGAACA-GACTACT 122426 Query 6857 AGCACATCAGCATTGCCAACCACATTGACTATGAGAAGTGGAATAATCATCA--GAGAAA 6914 ||| | | |||||||| |||| || | |||||||| |||||||| | | Sbjct 122425 CATCCATTTGTGTAGCCAACCATGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTT 122366 Query 6915 GGAATCA-AATGGGCCTGTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAG---TT 6970 | | | ||| |||| |||||||||||||| || || | ||| | |||| || Sbjct 122365 CGGCTAACAATA---CTGTCTTCAGAGTCATGGGTCAGTTTGTGGGAC-TACCAGAACTT 122310 Query 6971 TGATCGAAAAAACTCATGACTTTTTTCAAGACAG-CTTGATTTATTACAATGGG---AGA 7026 | ||| | ||| ||||| || || | |||| |||| | || |||| ||| Sbjct 122309 T--TCGTGAGAACGCATGAGTTCTTCGAGAACAGTCTTGTCT----ACTATGGACCCAGA 122256 Query 7027 CCAGACCTGATGGAAGTGAGGGGGAATGAATTATTGAACAAAACAGACAAGCTTGTCTGT 7086 || || | ||||| || ||| || || | | |||| ||||| | | || || Sbjct 122255 CCGGATTTAATGGACATGCAAGGGGATACTTTGATTAGCAAAGCAGACTATCCCGTATGC 122196 Query 7087 TGGGATGGTCAGGCTGGAGGACTGGAAGGACTGAGACAAAAGGGATGGAGCATATTGAAT 7146 ||||| || || ||||| || ||||| || ||||||||||| |||||||| | ||| Sbjct 122195 TGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAGCATTGTAAAT 122136 Query 7147 CTACTTGTGATTCAGAGAGAGTCCAAAATCAGAAACACCAAAGTGCAAACATTGGCTCAG 7206 || || || | | | ||||| | |||| | | ||||| ||| ||||||| || || Sbjct 122135 CTTCTCGTACTCCTGCGAGAGGCAAAAACCCGTAACACTTTAGTTAAAACATTAGCGCAA 122076 Query 7207 GGAGACAATCAAGTTGTTTGCA 7228 || ||||| ||||| | |||| Sbjct 122075 GGGGACAACCAAGTGATCTGCA 122054 >seq219500 Length=51628 Score = 107 bits (118), Expect = 1e-19 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 7387 GGAACAAACAAATTGGGATTGTTGATAAACAATGATGAGACAATACAGTCCGCAGATTTT 7446 || ||||| || || ||||| |||| |||| ||||||||||| ||| | |||| ||| Sbjct 6318 GGGACAAAGAAGTTAGGATTACTGATCAACAGAGATGAGACAATGCAGAGCACAGACTTT 6259 Query 7447 CTGACATACGGGAAAGTGCCAATCTTCCGGGGCAATATCAGATGCTTGGAGACTAAACGG 7506 || | || || ||||| || |||| | || |||||| | |||| | ||||| Sbjct 6258 TTGTCTTATGGTAAAGTACCTGTCTTTAGAGGTAATATCTTACCACTGGAAGCAAAACGA 6199 Query 7507 TGGTCTAGAGTGACTTGTGTGACAAATGATCAGCTTCCCTCGTTGGCGAATGTG 7560 ||||| ||||| || || || || |||||||||||||| || ||| | |||||| Sbjct 6198 TGGTCCAGAGTCACATGCGTCACCAATGATCAGCTTCCTTCTTTGTCTAATGTG 6145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36490882095888