Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_020805.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq133769 214 1e-51 seq176488 174 1e-39 seq49187 111 1e-20 seq283927 95.1 9e-16 seq90283 95.1 9e-16 >seq133769 Length=136818 Score = 214 bits (236), Expect = 1e-51 Identities = 924/1437 (64%), Gaps = 38/1437 (3%) Strand=Plus/Minus Query 5786 TACGGTTCATTTCGTCATTGGGGTCATCCTTTTATTAATTATTTTGAAGGCCTGGAGAAA 5845 || || ||||| | |||||||| ||||| || | |||| || ||||| ||||| Sbjct 123158 TATGGCTCATTCAGACATTGGGGCCATCCATTCTTGGATTACCAAGATGGCCTCCAGAAA 123099 Query 5846 TTGCATAAGCAAGTGACAATGGAAAAAGAAATTGATACCAATTATTCGGAAGCGTTGGCC 5905 | || | ||||| |||||| || || || || || | ||| | ||| | |||| Sbjct 123098 CTACACACACAAGTTCAAATGGAGAAGGAGATAGACACAGACTATGCTGAATCACTGGCA 123039 Query 5906 AGTGATCTGGCTAGGATAGTCTTGACTAAAGAGTTCAATGAGAAAAAACAATGGGCTGTA 5965 |||||||| || || || ||| ||||| ||| | | ||||||| ||| Sbjct 123038 AGTGATCTAGCCTTCATGGTGTTGGAGAAAGAATTCCACACTCAGCGACAATGGTTTGTC 122979 Query 5966 GATTACCACAGAGTGCCTACAAGCCATCCCTTTAAAAACCACATCCGAGACAACACATGG 6025 |||| ||| | || | || |||| | | | || | || | | |||||| Sbjct 122978 GATTTGGACAAAATGAATCCACAGGATCCGATGACGGATCATGTGAGAAATCAAACATGG 122919 Query 6026 CCAACAGCTGCAGTGATCCAAGATTTTGGAGATCACTGGCATGAGCTCCCATTAATTCAA 6085 || || || | |||||||| | ||||| | |||||| |||||||| | Sbjct 122918 CCTACCCCTCTTGAAATCCAAGAGTACGGAGACAAGTGGCATCTTCTCCCATTGACAGCT 122859 Query 6086 TGCTTCGACATACCTGATCTGATTGATCCATCCATTATCTACTCAGACAAGAGCCATTCC 6145 |||| | | || | |||||||| ||| || ||||| |||||||| |||||| Sbjct 122858 TGCTACTCAGTGCCACAAACTATTGATCCCTCCGTTCTCTACAGTGACAAGAGTCATTCC 122799 Query 6146 ATGAATCGATCAGAGGTGTTAAATCATGTAAGAACCAAGCCTCATACACCGATTCCAAGC 6205 ||||| || | || || | || ||||| ||| | || || | ||||| | Sbjct 122798 ATGAACCGTACTGATGTTCTGAACCATGTGAGACAGTATCCGAATCGAGAAATTCCTTCC 122739 Query 6206 AAGAAAGTTTTAGAGAGTATGATCGACAAACCAGCGACAAATTGGCTT----GAGTTTCT 6261 | |||||| | |||| | | || | ||| | ||| | | | ||||| | Sbjct 122738 AGAAAAGTTCT-GAGAACA-GCTCTTGAGACC--CCTCAAGTAAACATCAAAGAGTTCTT 122683 Query 6262 TGAAGAGATCGACAAAAATGGATTATCTGATGAGGATTTGGTGATCGGATTAAAAGGAAA 6321 ||||||||| | | || || | | || || || | |||||| | || ||||| Sbjct 122682 GGAAGAGATCAATGACAAGGGCCTCCCCAGAGAAGACTTAATCATCGGACTGAAGGGAAA 122623 Query 6322 AGAAAGAGAACTGAAGATTGCAGGTAGATTTTTCTCATTGATGTCTTGGAAGCTTAGGGA 6381 ||| ||||| |||||| | ||| |||||||||| | ||||| |||||| | | | Sbjct 122622 AGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTCGTGGAAGTTACGACA 122563 Query 6382 ATACTTTGTTGTCACAGAGTATTTGATCAA-GACTCACTTTGTGCCATTGTTCCATGGGC 6440 ||||||||| ||||| || | || || || | | ||| ||| |||| ||| | Sbjct 122562 ATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTG-TATGTACCACTGTTTAGTGGAC 122504 Query 6441 TGACCATGGCTGATGATATGACAGCAGTGATCAAAAAGATGCTGGAAAGCTCGTCTGGTC 6500 | || ||||| || || | ||| ||| | || || | || || || || | || Sbjct 122503 TTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTCGACAGTTCTTTACATC 122444 Query 6501 AAGGGCTAACAAACTACGACAGCGTTTGTATTGCAAATCATATTGACTATGAAAAATGGA 6560 |||| | |||| ||||| | ||||| | || || ||| |||| || |||| |||| Sbjct 122443 AAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCATGTTGATTACCAAAAGTGGA 122384 Query 6561 ATAATCATCAACGAAAATTGTCCAATGGACCTGTGTTTAAAGTCATGGGACAATTCTTGG 6620 | ||||||||||| | | | || |||| || | ||||||||| || || ||| Sbjct 122383 ACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAGTCATGGGTCAGTTTGTGG 122324 Query 6621 GTTATCCAAATTTGATATACCGGACACATGAGTTTTTTGAGAAAAGTTTAATTTACTATA 6680 | ||| | | | | || |||||||| || ||||| ||| | | |||||| Sbjct 122323 GACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAACAGTCTTGTCTACTATG 122264 Query 6681 ATGAAAGACCGGATCTCATGAAAGTCAGAAATGGGAT-CTTAGAAAATAGCA---CACAT 6736 ||||||||| | ||| | | | || ||||| ||| | | ||||| || | Sbjct 122263 GACCCAGACCGGATTTAATGGACAT--GCAAGGGGATACTTTG--ATTAGCAAAGCAGAC 122208 Query 6737 CAGAGGGTTTGCTGGAATGGACAGGCAGGTGGTTTAGAAGGTTTGAGACAGAAAGGATGG 6796 | || |||||| | ||||| ||| ||| | ||||| | ||||| || || ||| Sbjct 122207 TATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACAAAAGGGGTGG 122148 Query 6797 AGTATTCTTAATTTGCTGGTCATACAGAGAGAAGCGAAAATCCGGAATACCGCAGTTAAA 6856 || ||| | ||| | || || | | | |||| || |||| ||| || || ||||||| Sbjct 122147 AGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAACCCGTAACACTTTAGTTAAA 122088 Query 6857 GTGCTAGCACAAGGCGACAATCAAGTCATATGTACACA-GTA-CAAGACC---AAAC-AG 6910 |||| ||||| ||||| ||||| || || | ||| ||| | || |||| | Sbjct 122087 ACATTAGCGCAAGGGGACAACCAAGTGATCTGCA-ACATGTATCGTCTCCCTGAAACAAC 122029 Query 6911 TATC-GAAACGATATCGAGTTGAGACAAGCCTTAAACCAAATGGCAGCA--AACAATGAT 6967 ||| || | || |||||| || ||| || | | | | || || || || || Sbjct 122028 CATCGGAGAAGAAATCGAG--GA---AAGAATT---CGAGAAGTCATCAAGAATAACGAA 121977 Query 6968 GTCATCATGAAGGCCATAGAGTCAGGAACCAATAAGTTGGGTTTGTTGATCAATCAG-GA 7026 | ||| |||| ||| | ||||||| ||| |||| ||| | ||||| ||| || Sbjct 121976 GCCATAATGACTGCCGTGTCAGCAGGAACACGTAAACTGGGATTGCTAATCAA-CAGAGA 121918 Query 7027 TGAGACGATGCAATCTGCTGATTATCTGAACTATGGGAAGGTACCTATCTTTAGAGGAGT 7086 |||||| |||||| |||||| |||| |||||| |||||||| | || |||||| Sbjct 121917 TGAGACCATGCAAAGCACTGATTTTCTGTCCTATGGCAAGGTACCAGTGTTCAGAGGAAA 121858 Query 7087 AATCAGAGGGCTGGAAACAAAGCGATGGTCCCGAGTCACTTGTGTGACAAATGACCAATT 7146 ||| | | || ||||| ||||||| ||||| || || || || ||||| ||||| Sbjct 121857 CATCCTACCTTTAGAGGCAAAGAGATGGTCACGAGTTACATGCGTAACCAATGATCAATT 121798 Query 7147 ACCAACGTGTGCAAATCTCATGTCATCTGTATCTACAAATGCTTTGACAGTGGCACA 7203 ||| | | | ||| | | ||| | | || ||||||||| | ||||| || || Sbjct 121797 ACCTTCTTTGTCCAATGTACTTTCAACCATTTCAACAAATGCTATCACAGTAGCTCA 121741 >seq176488 Length=2532 Score = 174 bits (192), Expect = 1e-39 Identities = 430/643 (67%), Gaps = 12/643 (2%) Strand=Plus/Minus Query 6254 GAGTTTCTTGAAGAGATCGACAAAAATGGATTATCTGATGAGGATTTGGTGATCGGATTA 6313 |||||||| ||||||||| | | || || | | | || || ||| | || || || Sbjct 678 GAGTTTCTCGAAGAGATCAATGACAAGGGCCTCCCCAAGGAAGACTTGATCATTGGCTTG 619 Query 6314 AAAGGAAAAGAAAGAGAACTGAAGATTGC-AGGTAGATTTTTCTCATTGATGTCTTGGAA 6372 ||||| || || |||||| | |||| | ||| | ||| ||||| | ||||||||||| Sbjct 618 AAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCA-ATTCTTCTCCCTCATGTCTTGGAA 560 Query 6373 GCTTAGGGAATACTTTGTTGTCACAGAGTATTTGAT-CAAGACTCACTTTGTGCCATTGT 6431 | | ||| |||||||||| ||||| || | || |||| | | |||||| ||| Sbjct 559 GTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAAT-TGTACGTGCCACTGT 501 Query 6432 TCCATGGGCTGACCATGGCTGATGATATGACAGCAGTGATCAAAAAGATGCTGGAAAGCT 6491 || | || || || ||||| ||||| | ||| || | || || | || || || | Sbjct 500 TCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAACTTCTCGACAGTT 441 Query 6492 CGTCTGGTCAAGGGCTAACAAACTACGACAGCGTTTGTATTGCAAATCATATTGACTATG 6551 | | |||||| | ||| | ||| | | ||||| | || || ||| |||| || Sbjct 440 CTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAACCATGTTGATTACC 381 Query 6552 AAAAATGGAATAATCATCAACGAAAATTGTCCAATGGACCTGTGTTTAAAGTCATGGGAC 6611 | ||||||||||| |||||||| ||| |||| ||||| || ||| ||||| | Sbjct 380 AGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTCCGAGTGATGGGTC 321 Query 6612 AATTCTTGGGTTATCCAAATTTGATATACCGGACACATGAGTTTTTTGAGAAAAGTTTAA 6671 | || ||||| ||| | | | | | || || ||||| || ||||| ||| | | Sbjct 320 AGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTTCGAGAACAGTCTCA 261 Query 6672 TTTACTATAATGAA---AGACCGGATCTCATGAAAGTCAGAAATGG-GATCTTAGAAAAT 6727 | |||| ||| | ||||| ||| | ||| |||| | || || | ||| | | Sbjct 260 T---CTATTATGGACCTAGACCTGATTTAATGGAAGT-ACAAGGGGACACCTTGATCAGT 205 Query 6728 AGCACACATCAGAGGGTTTGCTGGAATGGACAGGCAGGTGGTTTAGAAGGTTTGAGACAG 6787 | || | | || || ||| | || ||| ||| ||| | || ||||||||||| Sbjct 204 AAAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTGAGACAA 145 Query 6788 AAAGGATGGAGTATTCTTAATTTGCTGGTCATACAGAGAGAAGCGAAAATCCGGAATACC 6847 ||||| ||||||||| | |||||||| || | | ||||||| || | ||| |||||| Sbjct 144 AAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCGAAATACC 85 Query 6848 GCAGTTAAAGTGCTAGCACAAGGCGACAATCAAGTCATATGTA 6890 || || |||||||| || ||||| || || ||||||| Sbjct 84 CTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATGTA 42 >seq49187 Length=20191 Score = 111 bits (122), Expect = 1e-20 Identities = 216/319 (68%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 6305 ATCGGATTAAAAGGAAAAGAAAGAGAACTGAAGATTGCAGGTAGATTTTTCTCATTGATG 6364 ||||| | |||| ||| ||||||||| | |||| | | ||||| ||||| | ||| Sbjct 6358 ATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCTTCTCGCTCATG 6417 Query 6365 TCTTGGAAGCTTAGGGAATACTTTGTTGTCACAGAGTATTTGATCAAGACTCACTTTGTG 6424 || ||||| || ||| |||||| || |||||| | || || ||| || |||| Sbjct 6418 TCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGGAGTTCTATGTG 6477 Query 6425 CCATTGTTCCATGGGCTGACCATGGCTGATGATATGACAGCAGTGATCAAAAAGATGCTG 6484 || | ||| || |||| |||||||||||| |||| |||| || || | || Sbjct 6478 CCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACAAAGAAACTCCTA 6537 Query 6485 GAAAGCTCGTCTGGTCAAGGGCTAACAAACTACGACAGCGTTTGTATTGCAAATCATATT 6544 || || ||| ||||||| | |||| || | ||| | | |||||||| | Sbjct 6538 GATAGTTCGATCAACCAAGGGCAGAATTACTATAACTCCATTTCTCTGGCAAATCACGTA 6597 Query 6545 GACTATGAAAAATGGAATAATCATCAACGAAAATTGTCCAATGGACCTGTGTTTAAAGTC 6604 || ||||||||||||||||| ||||| || | | ||| | |||||||| ||| Sbjct 6598 GATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTGTGTTCCGAGTA 6657 Query 6605 ATGGGACAATTCTTGGGTT 6623 ||||| || ||| | |||| Sbjct 6658 ATGGGTCAGTTCCTAGGTT 6676 >seq283927 Length=152763 Score = 95.1 bits (104), Expect = 9e-16 Identities = 252/377 (67%), Gaps = 10/377 (3%) Strand=Plus/Minus Query 6305 ATCGGATTAAAAGGAAAAGAAAGAGAACTGAAGATTGCAGGTAGATTTTTCTCATTGATG 6364 || |||||||||||||| ||| | ||| | |||| | ||| ||||| ||||| | ||| Sbjct 1656 ATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTCCCTAATG 1597 Query 6365 TCTTGGAAGCTTAGGGAATACTTTGTTGTCACAGAGTATTTGATCAAG--ACTC-ACTTT 6421 || ||||| ||| |||| || || | ||||| | | | ||| | || || | Sbjct 1596 TCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAATTCTACATA 1538 Query 6422 GTGCCATTGTTCCATGGGCTGACCATGGCTGATGATATGACAGCAGTGATCAAAAAGATG 6481 | ||| | || || || |||||||| || || ||| | ||| |||||| || Sbjct 1537 CCCCTATT--TGCA-GGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAAGTTG 1481 Query 6482 CTGGAAAGCTCGTCTGGTCAAGGGCTAACAAACTACGACAGCGTTTGTATTGCAAATCAT 6541 | || | || | || ||||||| | ||| | || ||||| || ||| Sbjct 1480 TTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCCAACCAT 1421 Query 6542 ATTGACTATGAAAAATGGAATAATCATCAACGAAAATTGTCCAATGGACCTGTGTTTAAA 6601 || || || ||||||||||||||||| ||| || | || | || || ||||| | Sbjct 1420 ATCGATTACGAAAAATGGAATAATCACCAAAGAGA--TG-CTAACAACCCGGTGTTCAGC 1364 Query 6602 GTCATGGGACAATTCTTGGGTTATCCAAATTTGATATACCGGACACATGAGTTTTTTGAG 6661 || ||||| ||||||||||| ||||| ||| || || || || | || ||||| Sbjct 1363 GTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTCTTTGAA 1304 Query 6662 AAAAGTTTAATTTACTA 6678 || ||||||||||| || Sbjct 1303 AACAGTTTAATTTATTA 1287 >seq90283 Length=1560 Score = 95.1 bits (104), Expect = 9e-16 Identities = 241/363 (66%), Gaps = 4/363 (1%) Strand=Plus/Plus Query 6300 TGGTGATCGGATTAAAAGGAAAAGAAAGAGAACTGAAGATTGCAGGTAGATTTTTCTCAT 6359 |||| || || | || || || ||| | ||| | |||| | || ||||||||||| Sbjct 234 TGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCC 293 Query 6360 TGATGTCTTGGAAGCTTAGGGAA--TACTTTGTTGTC-ACAGAGTATTTGATCAAGACTC 6416 | |||| ||||| | || || ||||| || ||| || ||||| | |||||| | Sbjct 294 TCATGTTATGGAACTTAAGAGACAGTACTTCGT-GTCGACCGAGTACCTCATCAAGGAGC 352 Query 6417 ACTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGATATGACAGCAGTGATCAAAA 6476 | ||| || | ||| ||| | || ||||| || ||| |||| ||||| ||||| Sbjct 353 TGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAA 412 Query 6477 AGATGCTGGAAAGCTCGTCTGGTCAAGGGCTAACAAACTACGACAGCGTTTGTATTGCAA 6536 || | ||||| | || |||||| | ||||| || | ||| | |||||| Sbjct 413 AGTTACTGGATAATTCCATCAATCAAGGATCAGATGACTACAACTCCATTTCTCTTGCAA 472 Query 6537 ATCATATTGACTATGAAAAATGGAATAATCATCAACGAAAATTGTCCAATGGACCTGTGT 6596 | ||||| ||||||||||||||||| || || || | | | || | || | | Sbjct 473 ACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAGCTT 532 Query 6597 TTAAAGTCATGGGACAATTCTTGGGTTATCCAAATTTGATATACCGGACACATGAGTTTT 6656 | | |||||||||||||||| | |||| | | | ||| | | ||||| ||||| | Sbjct 533 TAAGAGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAACACACGAGTTCT 592 Query 6657 TTG 6659 ||| Sbjct 593 TTG 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35321363824192