Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_020806.1 Length=11088 Score E Sequences producing significant alignments: (Bits) Value seq176488 145 5e-31 seq133769 138 8e-29 seq225232 122 6e-24 seq283927 111 1e-20 seq49187 107 1e-19 seq90283 105 5e-19 seq115841 78.8 7e-11 >seq176488 Length=2532 Score = 145 bits (160), Expect = 5e-31 Identities = 345/517 (67%), Gaps = 16/517 (3%) Strand=Plus/Minus Query 6253 GATGACCTGGTGATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATAGCCGGGAGATTT 6312 || ||| || | ||||| | ||||||||||| |||||| | |||| || || ||| Sbjct 639 GAAGACTTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTC 580 Query 6313 TTCTCACTAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATATCTAATTAAG 6372 ||||| || ||||| |||||| | || |||| ||||| || ||| |||| || || Sbjct 579 TTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAA 520 Query 6373 ACACACTTTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACGGCTGTAATA 6432 | | || ||||| ||| |||| | || |||||||||||| | || || | | Sbjct 519 GAATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACA 460 Query 6433 AAGAAAATGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATTCGGCAGTATGCATT 6492 |||||| | | || ||||| || || | || ||||| || | | || | Sbjct 459 AAGAAACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTG 400 Query 6493 GCAAACCACATTGACTATGAGAAATGGAACAACCATCAGAGGAAACGGTCAAATGAACCA 6552 || ||||| |||| || |||||||||| |||||||| | | | || | || Sbjct 399 GCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCT 340 Query 6553 ATTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGAGGACTCATGAA 6612 | || ||| |||||||| || |||| | || | ||| | || || || || Sbjct 339 GTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAG 280 Query 6613 TTCTTTGAGAAAAGTCTCATCTATTATAATGGA---AGGCCTGATTTGATGAAGGTGCAA 6669 ||||| ||||| ||||||||||||| ||||| || |||||||| ||| | || ||| Sbjct 279 TTCTTCGAGAACAGTCTCATCTATT---ATGGACCTAGACCTGATTTAATGGAAGTACAA 223 Query 6670 GATGGAAGACTTGTGAACACAACGAAGCAATT-----GGTTTGTTGGGAAGGACAGGCAG 6724 | || | || | ||| || | |||||| | || ||||||||||| ||| || Sbjct 222 G--GGGACACCT-TGATCAGTA--AAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAG 168 Query 6725 GCGGATTAGAGGGGTTAAGACAGAAGGGATGGAGCAT 6761 | || | ||||| || ||||| || || ||||| || Sbjct 167 GGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTAT 131 >seq133769 Length=136818 Score = 138 bits (152), Expect = 8e-29 Identities = 556/857 (65%), Gaps = 34/857 (4%) Strand=Plus/Minus Query 6265 ATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATAGCCGGGAGATTTTTCTCACTAATG 6324 || || || || || || || ||||| |||||| || || |||||||||| || ||| Sbjct 122639 ATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATG 122580 Query 6325 TCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATATCTAATTAAGACACACTT---T 6381 ||||||||| | || |||| ||||| || ||| |||| || || | | || | Sbjct 122579 TCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAA---AGAGTTGTAT 122523 Query 6382 GTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACGGCTGTAATAAAGAAAATG 6441 |||||||| || || | |||||||| || ||| | || || | ||||||| | Sbjct 122522 GTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTT 122463 Query 6442 TTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATTCGGCAGTATGCATTGCAAACCAC 6501 | || ||||| || || | || ||| || || | | || | || ||||| Sbjct 122462 CTCGACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCAT 122403 Query 6502 ATTGACTATGAGAAATGGAACAACCATCAGAG-GAAACGGTCAAATGAACCAATTTTTAA 6560 |||| || | || |||||||| ||||| | | ||| | || | | | || | Sbjct 122402 GTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGG-CTAACAATACTGTCTTCAG 122344 Query 6561 AGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGAGGACTCATGAATTCTTTGA 6620 |||||||||||| || |||| | || | ||| | ||| || ||||| ||||| || Sbjct 122343 AGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGA 122284 Query 6621 GAAAAGTCTCATCTATTATAATGGA---AGGCCTGATTTGATGAAGGTGCAAGATGGAAG 6677 ||| ||||| |||| | ||||| || || ||||| ||| | |||||| || | Sbjct 122283 GAACAGTCTTGTCTACT---ATGGACCCAGACCGGATTTAATGGACATGCAAG--GGGAT 122229 Query 6678 ACTTGTGAACA-CAACGAAG-CAAT-TGGTTTGTTGGGAAGGACAGGCAGGCGGATTAGA 6734 |||| ||| | ||| | || | || || || ||||||||||| ||| || | || Sbjct 122228 ACTT-TGATTAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGA 122170 Query 6735 GGGGTTAAGACAGAAGGGATGGAGCATCTTAAACTTATTGGTTATTCAAAGGGAATCCAA 6794 || ||||||| ||||| |||||||| |||| | | || | | | || | || Sbjct 122169 AGGCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAA 122110 Query 6795 GATTCGGAACACAGCAGTTAAAGTCCTTGCACAAGGTGATAATCAAGTAATATGCACACA 6854 | || ||||| ||||||| | || ||||| || || ||||| || |||| ||| Sbjct 122109 AACCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTGCA-ACA 122051 Query 6855 -GTA----CAAGACAAAACAAC--ACAGAAATGAAACAGAATTGCGATCTGCTCTTACTC 6907 ||| | ||||||| | || | |||| || || | | | || Sbjct 122050 TGTATCGTCTCCCTGAAACAACCATCGGAGAAGAAATCGAGGAAAGA-ATTCGAGAAGTC 121992 Query 6908 AAATGAAATTGAATAATGATGCAGTTATGAAAGCCATTGAATCTGGAACAAACAAACTAG 6967 || || |||||| || || | |||| ||| | | | |||||| ||||| | Sbjct 121991 --ATCAA---GAATAACGAAGCCATAATGACTGCCGTGTCAGCAGGAACACGTAAACTGG 121937 Query 6968 GTTTGTTGATCAACCAAGATGAAACAATGCAATCAGCTGACTACCTGAATTACGGTAAAG 7027 | ||| | |||||| |||||| || |||||| |||| | ||| || || || | Sbjct 121936 GATTGCTAATCAACAGAGATGAGACCATGCAAAGCACTGATTTTCTGTCCTATGGCAAGG 121877 Query 7028 TTCCCATATTTAGAGGAGTGATACGAGGTTTAGAAACAAAAAGGTGGTCACGAGTGACTT 7087 | || | || |||||| || | | |||||| |||| || ||||||||||| || | Sbjct 121876 TACCAGTGTTCAGAGGAAACATCCTACCTTTAGAGGCAAAGAGATGGTCACGAGTTACAT 121817 Query 7088 GTGTAACAAATGACCAA 7104 | ||||| ||||| ||| Sbjct 121816 GCGTAACCAATGATCAA 121800 >seq225232 Length=278362 Score = 122 bits (134), Expect = 6e-24 Identities = 412/623 (66%), Gaps = 24/623 (4%) Strand=Plus/Plus Query 6241 GGGTTGAGTGATGATGACCTGGTGATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATA 6300 ||| | ||| |||||| | | | ||| ||||| || || |||||||| | |||| Sbjct 38700 GGGCTAAGTCGTGATGATTTAATCACTGGCCTAAAGGGCAAAGAAAGAGAGATCAAGAGG 38759 Query 6301 GCCGGGAGATTTTTCTCACTAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAA 6360 | ||||||||| || || ||||| |||||| || | ||| || || || || ||| Sbjct 38760 GAGGGGAGATTTCTCCTTCTCATGTCATGGAAGATGCAACAATTATTCGTCATGACTGAA 38819 Query 6361 TA--TCTAATTAAGACACACTTTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACA 6418 | ||| || ||| | ||| ||| | || ||| | | ||||||||| ||| Sbjct 38820 CACGTCTTATCAAGGAATTTCATGTTCCATTGTTTTCGGGCCTTAAAATGGCAGACGACC 38879 Query 6419 TGACGGCTGTAATAAAGAAAATGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATT 6478 | || || | || || || | || | |||| || |||| | ||| || Sbjct 38880 TCACTAGAGTGACTAAAAAGATTCTTGACAACTCAATCAACCAAGGTCAAGTTGATAAT- 38938 Query 6479 CG--GCAGTATGCATTGCAAACCACATTGACTATGAGAAATGGAACAACCATCAGAGGAA 6536 || ||| | | | || ||||| | ||||| |||||||| ||||| || ||||| | Sbjct 38939 CGTTGCATTTCTC-TAGCCAACCATGTGGACTACGAGAAATGAAACAATCACCAGAG-AG 38996 Query 6537 ACGGT-CAAATGAACCAATTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAA---CC 6592 || |||| || || | |||| |||||| ||||||| || | |||||| || Sbjct 38997 CCGAAGCAAACGATCCTGTCTTTACCATCATGGTAAAATTCTTAGG-TCTCCCAAATGCC 39055 Query 6593 TTATATCGAGGACTCATGAATTCTTTGAGAAAAGTCTCATCTATTATAATGGAAGGCCTG 6652 || | || | |||||| || || | | || || | || ||| |||||||| Sbjct 39056 TTTG--CAAGAATTCATGAGTTTTTCCAACACAGCCTTGTGTACTATGGACCAAGGCCTG 39113 Query 6653 ATTTGATGAAGGTGCAAGATGGAAGACTTG-TG-AACACAACGAAGCAATTG--GTTTGT 6708 || ||||| | ||| | |||| || | || || |||| | | | | || ||| Sbjct 39114 ATCTGATGGAAGTG---GTTGGA-GATTCCCTGCAAAACAAGGGATCTTTCCCCGTGTGT 39169 Query 6709 TGGGAAGGACAGGCAGGCGGATTAGAGGGGTTAAGACAGAAGGGATGGAGCATCTTAAAC 6768 ||||| || ||| ||| ||| | || |||||||| || | |||||||||||| | ||| Sbjct 39170 TGGGAGGGCCAGTTAGGGGGACTGGAAGGGTTAAGGCAAAGAGGATGGAGCATCGTCAAC 39229 Query 6769 TTATTGGTTATTCAAAGGGAATCCAAGATTCGGAACACAGCAGTTAAAGTCCTT-GCACA 6827 | |||||| | | ||| || |||| | ||| ||||| | | ||||| |||| || || Sbjct 39230 CTTTTGGTTTTACTAAGAGAGGCCAAAACTCGCAACAC-CCTGGTAAAGACCTTGGCCCA 39288 Query 6828 AGGTGATAATCAAGTAATATGCA 6850 ||| ||||||||||| || |||| Sbjct 39289 AGGAGATAATCAAGTTATCTGCA 39311 >seq283927 Length=152763 Score = 111 bits (122), Expect = 1e-20 Identities = 264/390 (68%), Gaps = 12/390 (3%) Strand=Plus/Minus Query 6253 GATGACCTGGTGATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATAGCCGGGAGATTT 6312 ||||| || | ||||| ||||||| |||||| | ||| | |||| | || ||||| Sbjct 1668 GATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTC 1609 Query 6313 TTCTCACTAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATATCTAATTAAG 6372 ||||| |||||||| ||||| || | ||||||| || || || ||| | ||| | ||| Sbjct 1608 TTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAG 1550 Query 6373 ACACACTTTGTACCACT-TTTCCACGGCTTGACAATGGCAGATGACATGACGGCTGTAAT 6431 | || |||| || ||| || | || || |||||||| ||| ||| || || Sbjct 1549 GAATTCTACATACCCCTATTTGCAGGACTC-ACCATGGCAGACGACTTGATGGAAGTCGC 1491 Query 6432 AAAGAAAATGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTAT---TCGGCAGTATG 6488 ||| || |||| || | |||| ||||| || | | ||||| | | | || Sbjct 1490 AAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTG--ATTAC- 1434 Query 6489 CATTGCAAACCACATTGACTATGAGAAATGGAACAACCATCAGAGGAAACGGTCAAATGA 6548 |||||| ||||| || || || || |||||||| || || || || | | | | | | | Sbjct 1433 CATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAG-AGATGCTAACA--A 1377 Query 6549 ACCAATTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGAGGACTCA 6608 || | || | || ||||| ||||||||||| | || ||| | || | | || || Sbjct 1376 CCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCA 1317 Query 6609 TGAATTCTTTGAGAAAAGTCTCATCTATTA 6638 |||||||||| || ||| | || ||||| Sbjct 1316 CAAATTCTTTGAAAACAGTTTAATTTATTA 1287 >seq49187 Length=20191 Score = 107 bits (118), Expect = 1e-19 Identities = 193/282 (68%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 6253 GATGACCTGGTGATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATAGCCGGGAGATTT 6312 ||||||||| | || ||||| |||| |||||||||||| | |||| || | ||||| Sbjct 6346 GATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTC 6405 Query 6313 TTCTCACTAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATATCTAATTAAG 6372 ||||| || ||||||||||| ||||| |||| | || | || || | |||| ||| Sbjct 6406 TTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAG 6465 Query 6373 ACACACTTTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACGGCTGTAATA 6432 || ||| || |||||| || ||||| ||||| ||||| |||| || | | Sbjct 6466 GAGTTCTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACA 6525 Query 6433 AAGAAAATGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATTCGGCAGTATGCATT 6492 |||||| | | || ||||| | || || | || | ||| | | | | Sbjct 6526 AAGAAACTCCTAGATAGTTCGATCAACCAAGGGCAGAATTACTATAACTCCATTTCTCTG 6585 Query 6493 GCAAACCACATTGACTATGAGAAATGGAACAACCATCAGAGG 6534 ||||| ||| | || ||||| |||||||| ||||||||| || Sbjct 6586 GCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGG 6627 >seq90283 Length=1560 Score = 105 bits (116), Expect = 5e-19 Identities = 401/621 (65%), Gaps = 20/621 (3%) Strand=Plus/Plus Query 6253 GATGACCTGGTGATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATAGCCGGGAGATTT 6312 || |||||||| || ||||| || ||||||||| | ||| | |||| | ||||||||| Sbjct 227 GAAGACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTT 286 Query 6313 TTCTCACTAATGTCGTGGAAGCT--GAGAGAATATTTTGTGATCACGGAATATCTAATTA 6370 ||||| || |||| ||||| | |||| | || || ||| || || || || || | Sbjct 287 TTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCA 346 Query 6371 AGACACACTTTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACGGCTGTAA 6430 || | | ||| || || ||| || || |||||||| || || |||| || | Sbjct 347 AGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGA 406 Query 6431 TAAAGAAAATGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATTCGGCAGTATGCA 6490 || || | |||| | ||| | || || | | || || | | | Sbjct 407 CCAAAAAGTTACTGGATAATTCCATCAATCAAGGATCAGATGACTACAACTCCATTTCTC 466 Query 6491 TTGCAAACCACATTGACTATGAGAAATGGAACAACCATCAGAGGAAACGGTCAAATGAAC 6550 |||||||||| || |||||||| |||||||||||||| |||||| | | || || | Sbjct 467 TTGCAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATC 526 Query 6551 CAATTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTAT---ATCGAGGACTC 6607 || ||| | ||||||||| |||||| | ||||| | | || | || | || | Sbjct 527 CAGCTTTAAGAGTCATGGGACAATTCAT-CGGTTTACTAGAGTTGTTTGTTCAA--ACAC 583 Query 6608 ATGAATTCTTTGAGAAAAGTCTCATCTATTATAATGGA---AGGCCTGATTTGATGAAGG 6664 | || ||||||| || || |||| | | ||| | ||||| || ||| | | Sbjct 584 ACGAGTTCTTTGGAGGCAGCCTTGTCTACT---ACGGACCCCGTCCTGACTTAATGGAAG 640 Query 6665 TGCAAGATGGA-AG--ACTTGTGAACACAACGAAGCAATTGGTTTGTTGGGAAGGACAGG 6721 | ||||||| || ||| ||||| | ||| || || ||| | ||||| Sbjct 641 T---AGATGGAGAGTCACTACGGAACAAAGGGAACTTCCCTGTCTGCTGGAAGAGACAGC 697 Query 6722 CAGGCGGATTAGAGGGGTTAAGACAGAAGGGATGGAGCATCTTAAACTTATTGGTTATTC 6781 || || || || || | |||| || || |||||||| |||| ||||||| | | Sbjct 698 TCGGAGGCTTGGAAGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCTATTGGTCCTCC 757 Query 6782 AAAGGGAATCCAAGATTCGGAACACAGCAGTTAAAGTCCTTGCACAAGGTGATAATCAAG 6841 ||| |||||| | | ||||| |||||| ||| | | || || || |||| Sbjct 758 CGCACGAAGCCAAGAGTAGAAACACCATGGTTAAAACCCTCGTGAAGGGAGACAACCAAG 817 Query 6842 TAATATGCACACAGTACAAGA 6862 ||||||||| |||||||| Sbjct 818 TAATATGCAACTCGTACAAGA 838 >seq115841 Length=1175 Score = 78.8 bits (86), Expect = 7e-11 Identities = 121/172 (70%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 6253 GATGACCTGGTGATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATAGCCGGGAGATTT 6312 || |||||||| || ||||| || ||||||||| | ||| | |||| | ||||||||| Sbjct 915 GAAGACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTT 974 Query 6313 TTCTCACTAATGTCGTGGAAGCT--GAGAGAATATTTTGTGATCACGGAATATCTAATTA 6370 ||||| || |||| ||||| | |||| | || || ||| || || || || || | Sbjct 975 TTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCA 1034 Query 6371 AGACACACTTTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGAC 6422 || | | ||| || || ||| || || |||||||| || || |||| Sbjct 1035 AGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGAC 1086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35219389478976