Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_020808.1 Length=11918 Score E Sequences producing significant alignments: (Bits) Value seq283927 80.6 2e-11 >seq283927 Length=152763 Score = 80.6 bits (88), Expect = 2e-11 Identities = 203/294 (69%), Gaps = 16/294 (5%) Strand=Plus/Minus Query 6999 CAGATGATGATCTCATCATAGGCCTGAAGCCAAAAGAGAGAGAGTTGAAGATAGAGGGAC 7058 |||| |||||||||||||| || | || ||| || | || | |||| || ||| Sbjct 1672 CAGA-GATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAA 1614 Query 7059 GtttttttGCCCTAATGTCCTGGAA-CTTGAGGCTTTACTTTGTAATCACGGAGAAATTA 7117 | || || |||||||||||||||| ||| | | || || || || || || || || Sbjct 1613 GATTCTTCTCCCTAATGTCCTGGAATCTTCAA-CAATATTTCGTCATTACAGA-AACCTA 1556 Query 7118 TTA--GCAAAT-TACATATTGCCTCTGTTTGATGCTCTGACCATGACAGACAACCTTAAT 7174 || | || | |||||| || || |||| | || |||||| ||||| || | | Sbjct 1555 CTAAAGGAATTCTACATA---CCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATG 1499 Query 7175 AAAGTATTCAAGAAGTTGATAGACAGAGTGACAGGG-CAGGGTCTTTTAGATTACTCAAG 7233 |||| || |||||| |||||| | | || ||| || || | |||||| ||| Sbjct 1498 GAAGTCGCAAAAAAGTTGTTAGACA-ATTCACCGGGACAAGGGCAGGACGATTAC-CAAT 1441 Query 7234 GG--TAACATATGCATTCCATCTTGATTACGAAAAATGGAATAATCACCAGAGA 7285 | || ||| ||| |||| | |||||||||||||||||||||||||| ||| Sbjct 1440 TGATTACCAT-TGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGA 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37864349058016