Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_020810.1 Length=11976 Score E Sequences producing significant alignments: (Bits) Value seq49187 87.8 1e-13 seq283927 86.0 5e-13 >seq49187 Length=20191 Score = 87.8 bits (96), Expect = 1e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7061 GATGATCTAATCATAGGTCTAAAACCAAAGGAAAGAGAATTGAAGATAGAGGGCCGATTC 7120 ||||| || || || || || ||| ||||||||||||| | |||| ||||| ||||| Sbjct 6346 GATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTC 6405 Query 7121 TTCGCACTCATGTCCTGGAATCTGAGGCTTTATTTTGTCATCACAGAG 7168 ||| | |||||||| ||||||||||||| || | |||| |||||| Sbjct 6406 TTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAG 6453 >seq283927 Length=152763 Score = 86.0 bits (94), Expect = 5e-13 Identities = 191/283 (67%), Gaps = 3/283 (1%) Strand=Plus/Minus Query 7061 GATGATCTAATCATAGGTCTAAAACCAAAGGAAAGAGAATTGAAGATAGAGGGCCGATTC 7120 |||||||| ||||| || ||||| ||||||| | ||| | |||| || || ||||| Sbjct 1668 GATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTC 1609 Query 7121 TTCGCACTCATGTCCTGGAATCTGAGGCTTTATTTTGTCATCACAGAGAAGCTTTTGGCC 7180 ||| | || |||||||||||||| | ||||| ||||| ||||| || || | Sbjct 1608 TTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGA-AACCTACTAAAG 1550 Query 7181 ACATACATCCTGCCTCTATTTGACTCTCTAACCATGACGGACAACCTGAACAAAGTCTTC 7240 || | | | || ||||||| || |||||| | ||| || ||| ||||| Sbjct 1549 GAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCA 1490 Query 7241 AAAAAGTTGATCGACAGAGTGA-CAGGACAAGGGTTGTTAGACTACTCGCGAGTTACATA 7299 ||||||||| | |||| | | | | ||||||||| | || ||| |||| Sbjct 1489 AAAAAGTTGTTAGACA-ATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCAT 1431 Query 7300 TGCATTTCATCTCGACTATGAGAAGTGGAACAATCACCAGAGA 7342 ||| ||| |||| || || || ||||| |||||||| ||| Sbjct 1430 TGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGA 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38049177558720