Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= NC_020810.1
Length=11976
Score E
Sequences producing significant alignments: (Bits) Value
seq49187 87.8 1e-13
seq283927 86.0 5e-13
>seq49187
Length=20191
Score = 87.8 bits (96), Expect = 1e-13
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 7061 GATGATCTAATCATAGGTCTAAAACCAAAGGAAAGAGAATTGAAGATAGAGGGCCGATTC 7120
||||| || || || || || ||| ||||||||||||| | |||| ||||| |||||
Sbjct 6346 GATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTC 6405
Query 7121 TTCGCACTCATGTCCTGGAATCTGAGGCTTTATTTTGTCATCACAGAG 7168
||| | |||||||| ||||||||||||| || | |||| ||||||
Sbjct 6406 TTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAG 6453
>seq283927
Length=152763
Score = 86.0 bits (94), Expect = 5e-13
Identities = 191/283 (67%), Gaps = 3/283 (1%)
Strand=Plus/Minus
Query 7061 GATGATCTAATCATAGGTCTAAAACCAAAGGAAAGAGAATTGAAGATAGAGGGCCGATTC 7120
|||||||| ||||| || ||||| ||||||| | ||| | |||| || || |||||
Sbjct 1668 GATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTC 1609
Query 7121 TTCGCACTCATGTCCTGGAATCTGAGGCTTTATTTTGTCATCACAGAGAAGCTTTTGGCC 7180
||| | || |||||||||||||| | ||||| ||||| ||||| || || |
Sbjct 1608 TTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGA-AACCTACTAAAG 1550
Query 7181 ACATACATCCTGCCTCTATTTGACTCTCTAACCATGACGGACAACCTGAACAAAGTCTTC 7240
|| | | | || ||||||| || |||||| | ||| || ||| |||||
Sbjct 1549 GAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCA 1490
Query 7241 AAAAAGTTGATCGACAGAGTGA-CAGGACAAGGGTTGTTAGACTACTCGCGAGTTACATA 7299
||||||||| | |||| | | | | ||||||||| | || ||| ||||
Sbjct 1489 AAAAAGTTGTTAGACA-ATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCAT 1431
Query 7300 TGCATTTCATCTCGACTATGAGAAGTGGAACAATCACCAGAGA 7342
||| ||| |||| || || || ||||| |||||||| |||
Sbjct 1430 TGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGA 1388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 38049177558720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |