Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_022580.1 Length=12676 Score E Sequences producing significant alignments: (Bits) Value seq90283 109 4e-20 seq133769 105 5e-19 seq219500 100 2e-17 >seq90283 Length=1560 Score = 109 bits (120), Expect = 4e-20 Identities = 179/257 (70%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 7731 AAAGAAAGGGAAATCAAGGATGAGGGTCGATTTTTCTCTTTAATGTCATGGGAATTACGG 7790 || ||| ||||| ||||| | ||||| |||||||||| | |||| |||| | ||| | Sbjct 254 AAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCCTCATGTTATGGAACTTAAGA 313 Query 7791 GAA--TATTTTGTTGTAACAGAATACTTAATTAAAGAGCATTTTGTTCCATTGTTCCATG 7848 || || || || || || ||| | || || |||| | |||||| | ||| || Sbjct 314 GACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGTATGTTCCGCTCTTCTCTG 373 Query 7849 GATTAACGATGGCAGATGATTTAACCACTGTGATGAAAAAGATGCTGGACAATACAATCG 7908 ||||||| ||||| || ||||| |||| |||| |||||| | ||||| ||| | ||| Sbjct 374 GATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAAAGTTACTGGATAATTCCATCA 433 Query 7909 GCCAAGGTGGCAAGGACTACACACAAATTTGCATAGCCAATCACTTTGATTATGAGAAAT 7968 ||||| | ||||||| |||| | || || || | || ||||| |||| Sbjct 434 ATCAAGGATCAGATGACTACAACTCCATTTCTCTTGCAAACCATATAGACTATGAAAAAT 493 Query 7969 GGAACAATCATCAGAGG 7985 ||||||| || |||||| Sbjct 494 GGAACAACCACCAGAGG 510 Score = 95.1 bits (104), Expect = 1e-15 Identities = 283/434 (65%), Gaps = 11/434 (3%) Strand=Plus/Plus Query 8152 TCTGTTGGAATGGACAACTAGGAGGATTGGAAGGTCTCCGACAAAAAGGTTGGAGTATTT 8211 |||| ||||| |||| || ||||| ||||||||||||||||||||||||||||| ||| Sbjct 680 TCTGCTGGAAGAGACAGCTCGGAGGCTTGGAAGGTCTCCGACAAAAAGGTTGGAGCATTG 739 Query 8212 TAAATTTGTTAGTCATAAATAGAGAGAGCAAGATACGAAATACCATGGTGAAGTGTTTGG 8271 ||||| | || ||| | || ||||| |||| |||||||| || | | Sbjct 740 TAAATCTATTGGTCCTCCCGCACGAAGCCAAGAGTAGAAACACCATGGTTAAAACCCTCG 799 Query 8272 CCCAAGGAGATAATCAAGTGATATTTACATCATATAAGATTGAACAATATAGAACCAA-- 8329 | ||||| || ||||| |||| | || || ||||| || | ||| | Sbjct 800 TGAAGGGAGACAACCAAGTAATATGCAACTCGTACAAGATCCCGACATCCACCACCCAGT 859 Query 8330 -TGAAGAAAGAAATTTTAACATAAGAGCCATAGTCCAGAATAACAATGAGATAATAGATA 8388 |||| || ||| ||| | | | | |||| || |||||||| |||| | Sbjct 860 CTGAACTAAAAAA----AACGGATCAACGA-AGTCATGACCAACAATGATGTAATCATGA 914 Query 8389 G---TATTTCTAATGGGACAAAGAAGTTAGGATTGTTGATTAATCATGATGAAACCATAC 8445 | | || || ||| ||| | || | || | | ||||| ||||| ||||| || | Sbjct 915 GGGCTGTTGCTGCTGGAACAGAAAAACTGGGTCTCCTCATTAACCATGACGAAACAATGC 974 Query 8446 AGAGCGCGGATTACATGATTTATGGGAAAGTTCCTGTTTTTAGAGGTGTATTCCAAAGTC 8505 ||| | || | | |||||| ||||| || || | ||| ||| ||| || Sbjct 975 GAAGCTCTGACTTTTTTTCTTATGGAAAAGTGCCGGTGTATAGGGGTAACATCCTCCCTC 1034 Query 8506 TCGAAACAAAGAGGTGGTCCAGAGTCACATGTGTTACAAACGATCAACTACCAACTCTTG 8565 |||| |||| || ||||| |||||||| || || || || |||||| ||| | || | Sbjct 1035 TCGAGGCAAAAAGATGGTCGAGAGTCACGTGCGTGACTAATGATCAAATACAATCTTTAT 1094 Query 8566 CTAGCATAATGTCG 8579 | | | | |||||| Sbjct 1095 CCAACGTGATGTCG 1108 >seq133769 Length=136818 Score = 105 bits (116), Expect = 5e-19 Identities = 174/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 7731 AAAGAAAGGGAAATCAAGGATGAGGGTCGATTTTTCTCTTTAATGTCATGGGAATTACGG 7790 ||||| || || | ||| | |||||||||||||||||| | ||||| ||| | ||||| Sbjct 122624 AAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTCGTGGAAGTTACGA 122565 Query 7791 GAATATTTTGTTGTAACAGAATACTTAATTAAAGAGCATTTTGTTCCATTGTTCCATGGA 7850 |||| ||||| ||||||| | | || |||||| | ||| ||| |||| |||| Sbjct 122564 CAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTACCACTGTTTAGTGGA 122505 Query 7851 TTAACGATGGCAGATGATTTAACCACTGTGATGAAAAAGATGCTGGACAATACAATCGGC 7910 | || ||||| || || | || | || | || || | || |||| | | | Sbjct 122504 CTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTCGACAGTTCTTTACAT 122445 Query 7911 CAAGGTGGCAAGGACTACACACAAATTTGCATAGCCAATCACTTTGATTATGAGAAATGG 7970 ||||| | | |||||| || ||||| ||||||| || ||||||| | || ||| Sbjct 122444 CAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCATGTTGATTACCAAAAGTGG 122385 Query 7971 AACAATCATCA 7981 ||||||||||| Sbjct 122384 AACAATCATCA 122374 >seq219500 Length=51628 Score = 100 bits (110), Expect = 2e-17 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8400 GGGACAAAGAAGTTAGGATTGTTGATTAATCATGATGAAACCATACAGAGCGCGGATTAC 8459 |||||||||||||||||||| |||| || ||||| || || |||||| | || | Sbjct 6318 GGGACAAAGAAGTTAGGATTACTGATCAACAGAGATGAGACAATGCAGAGCACAGACTTT 6259 Query 8460 ATGATTTATGGGAAAGTTCCTGTTTTTAGAGGTGTATTCCAAAGTCTCGAAACAAAGAGG 8519 || |||||| ||||| ||||| ||||||||| || | || ||| |||| | Sbjct 6258 TTGTCTTATGGTAAAGTACCTGTCTTTAGAGGTAATATCTTACCACTGGAAGCAAAACGA 6199 Query 8520 TGGTCCAGAGTCACATGTGTTACAAACGATCAACTACC 8557 ||||||||||||||||| || || || ||||| || || Sbjct 6198 TGGTCCAGAGTCACATGCGTCACCAATGATCAGCTTCC 6161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40279866360320