Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_022755.1 Length=10692 Score E Sequences producing significant alignments: (Bits) Value seq176488 159 2e-35 seq133769 127 1e-25 seq49187 107 1e-19 >seq176488 Length=2532 Score = 159 bits (176), Expect = 2e-35 Identities = 371/551 (67%), Gaps = 24/551 (4%) Strand=Plus/Minus Query 5992 TTCTTCTCTCTAATGTCTTGGAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATA 6051 |||||||| || ||||||||||| ||||| ||||||| || |||||| |||| ||| Sbjct 582 TTCTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATA 523 Query 6052 AA-GACTCATTTT--GTTCCTTTGTTTCACGGGCTCACCATGGCGGACGACCTGACAGCT 6108 || || ||| | || || |||| |||| ||||| ||||| || ||||| ||| Sbjct 522 AAAGA---ATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAG 466 Query 6109 GTTATGAAGAAAATGATGGAGTCATCTTCAGGACAAGGCGCCTCCGACTATGATGCCATT 6168 |||| |||||| | | || |||| | ||||| | || || ||||| Sbjct 465 GTTACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATT 406 Query 6169 GCCATTGCGAACCATATTGACTATGAAAAATGGAATAACCATCAACGGAAAGAATCCAAT 6228 | || |||||| |||| || | |||||||||||||||||||| |||| Sbjct 405 TGTGTGGCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAAC 346 Query 6229 GGTCCTGTCTTCAGAGTCATGGGTCAGTTCCTAGGGTAT-CCAAATTTAATTTACCGGAC 6287 ||||||||| |||| ||||||||||| | |||| | ||| | | | | | || Sbjct 345 AACCCTGTCTTCCGAGTGATGGGTCAGTTTGT-GGGTCTGCCAGAACTTTTCGTCAGAAC 287 Query 6288 GCATGAGTTTTTTGAGAATAGCCTCATATATTACAATAACAGACCCGACCTGATGAGAGT 6347 ||| ||||| || ||||| || ||||| ||||| ||||| || | ||| ||| Sbjct 286 GCACGAGTTCTTCGAGAACAGTCTCATCTATTATGGACCTAGACCTGATTTAATGGAAGT 227 Query 6348 ----GGTGAA----TAATACCGTGGAGAACAGTTCTGATCAAAGAGTCTGCTGGAATGGT 6399 || || | || | || || | |||| | | ||||| ||| | || Sbjct 226 ACAAGGGGACACCTTGAT-CAGTAAAGCA-AGTTATCCT------GTCTGTTGGGAAGGC 175 Query 6400 CAGGCAGGGGGGCTCGAAGGACTGCGGCAAAAAGGATGGAGTATATTAAATTTGCTGGTG 6459 ||| |||||| ||||| || || | |||||||| |||||||| | |||||||| ||| Sbjct 174 CAGAAAGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTG 115 Query 6460 ATAGCTAGGGAATCTCAGATTAGAAACACCTCTGTCAAAACTCTGGCACAGGGGGACAAT 6519 | | ||| || ||| |||| ||| |||||| || || |||||||||||||| Sbjct 114 CTCTTGCGAGAAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAAC 55 Query 6520 CAGGTGATTTG 6530 |||||||| || Sbjct 54 CAGGTGATATG 44 >seq133769 Length=136818 Score = 127 bits (140), Expect = 1e-25 Identities = 262/381 (69%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 5935 GAAGACCTTATTATAGGCCTCAAAGCAAAGGAACGTGAGTTGAAAACCGTAGGTCGGTTC 5994 |||||| | || || || || || | ||| || | ||| |||| | | ||||| || Sbjct 122651 GAAGACTTAATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTT 122592 Query 5995 TTCTCTCTAATGTCTTGGAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATAAA- 6053 |||||||| ||||| ||||| ||| || ||||||| || |||||| |||||||||| Sbjct 122591 TTCTCTCTCATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAA 122532 Query 6054 GACTCATTTTGTTCCTTTGTTTCACGGGCTCACCATGGCGGACGACCTGACAGCTGTTAT 6113 || | | | || || ||||| || || || |||||||||||||| ||| |||| Sbjct 122531 GAGTTGTAT-GTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTAC 122473 Query 6114 GAAGAAAATGATGGAGTCATCTTCAGGACAAGGCGCCTCCGACTA-TGATGCCATTGCCA 6172 |||||| | | || |||| | ||||| | ||||| | || ||||| Sbjct 122472 AAAGAAACTTCTCGACAGTTCTTTACATCAAGGACGAACAGACTACTCAT-CCATTTGTG 122414 Query 6173 TTGCGAACCATATTGACTATGAAAAATGGAATAACCATCAACGGAAAGAATCCAATGGTC 6232 | || |||||| |||| || |||| ||||| || |||||||| | || | Sbjct 122413 TAGCCAACCATGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATA 122354 Query 6233 CTGTCTTCAGAGTCATGGGTCAGTTCCTAGG-GTATC-CAAATTTAATTTACCGGACGCA 6290 ||||||||||||||||||||||||| | || || | || ||| | | | ||||| Sbjct 122353 CTGTCTTCAGAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGA--GAACGCA 122296 Query 6291 TGAGTTTTTTGAGAATAGCCT 6311 |||||| || ||||| || || Sbjct 122295 TGAGTTCTTCGAGAACAGTCT 122275 >seq49187 Length=20191 Score = 107 bits (118), Expect = 1e-19 Identities = 403/626 (64%), Gaps = 21/626 (3%) Strand=Plus/Plus Query 5935 GAAGACCTTATTATAGGCCTCAAAGCAAAGGAACGTGAGTTGAAAACCGTAGGTCGGTTC 5994 || ||||| || || || ||||||| ||||||| | || | || | | | | ||| Sbjct 6346 GATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTC 6405 Query 5995 TTCTCTCTAATGTCTTGGAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATAAAG 6054 ||||| || ||||| ||||| | || |||||| ||| | ||||||| | | |||||| Sbjct 6406 TTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAG 6465 Query 6055 ACTCATTTTGTTCCTTTGTTTCACGGGCTC-ACCATGGCGGACGACCTGACAGCTGTTAT 6113 | ||| || | |||| |||| | || ||||| || || ||||| || | Sbjct 6466 GAGTTCTATGTGCCCCT-TTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGAC 6524 Query 6114 GAAGAAAATGATGGAGTCATCT-TCAGGACAAGGCGCCTCCGACTATGATGCCATTGCCA 6172 |||||| | | || || ||| ||||| ||||| | ||||| | Sbjct 6525 AAAGAAACTCCTAGATAGTTCGATCAAC-CAAGGGCAGAATTACTATAACTCCATTTCTC 6583 Query 6173 TTGCGAACCATATTGACTATGAAAAATGGAATAACCATCAACGGAAAGAATCCAATGGTC 6232 | || || || | || ||||||||||||||||||||||| ||| || | ||| ||| Sbjct 6584 TGGCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTC 6643 Query 6233 CTGTCTTCAGAGTCATGGGTCAGTTCCTAGGGTATCCAAATTTAATTTACCGGACGCATG 6292 |||| ||| |||| ||||||||||||||||| | || | | | || || |||| Sbjct 6644 CTGTGTTCCGAGTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCATG 6703 Query 6293 AGTTTTTTGAGAATAGCCTCATATA--------------TTACAATAACAGACCCGACCT 6338 |||| ||| | | ||| | || ||| | | || | | |||| Sbjct 6704 AGTTCTTTCGTAGCGGTCTCGTGTACTGCGGCGAGACCGCTACGAAATCACCCACTACCT 6763 Query 6339 GATGAGAGTGGTGAATAATACCGTGGAGAACAGTTCTGATCAAAGAGTCTGCTGGAATGG 6398 ||| || ||| | || | || | |||| || | ||||||||| | || Sbjct 6764 TATGGAGGTAGTGGGTGATTCTCTGAAAAACAAGGGGGA-CTTCCCGTCTGCTGGGAAGG 6822 Query 6399 TCAGGCAGGGGGGCTCGAAGGACTGCGGCAAAAAGGATGGAGTATATTAAATTTGCTGGT 6458 ||| || || || |||||||| |||||||| || ||||| || | ||||| || || Sbjct 6823 CCAGCTTGGCGGCCTTGAAGGACTTCGGCAAAAGGGCTGGAGCATTGTGAATTTACTTGT 6882 Query 6459 GATAGCTAGGGAATCTCAGATTAGAAACAC-CTCTGTCAAAACTCTGGCACAGGGGGACA 6517 | || | | | | | |||||||| ||| ||||||| |||| ||| ||||| | Sbjct 6883 CCTCTTAAGAGGAGCAAAAACAAGAAACACACTC-ATCAAAACCCTGGAACACGGGGATA 6941 Query 6518 ATCAGGTGATTTGCACTCAATATAAG 6543 | |||||||| || | | |||||| Sbjct 6942 ACCAGGTGATCTGTAATTCCTATAAG 6967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 33957456956928