Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_024473.1 Length=11123 Score E Sequences producing significant alignments: (Bits) Value seq176488 201 8e-48 seq133769 161 7e-36 seq225232 118 7e-23 seq292816 116 3e-22 seq49187 114 9e-22 seq283927 95.1 9e-16 >seq176488 Length=2532 Score = 201 bits (222), Expect = 8e-48 Identities = 412/605 (68%), Gaps = 18/605 (3%) Strand=Plus/Minus Query 6196 GACGATTTGATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTC 6255 || || ||||| ||||| || || || || || |||||| | || | || || |||| Sbjct 639 GAAGACTTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTC 580 Query 6256 TTCTCATTGATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAA 6315 ||||| | ||||| |||| |||||| |||| ||||| || || | | || ||| Sbjct 579 TTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAA 520 Query 6316 ACATACTACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATT 6375 || ||||| || |||| || || | || |||||||||||||||||| ||| | Sbjct 519 GAATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACA 460 Query 6376 AAGAAGATGATGGACAGTTCATCAGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTG 6435 ||||| | | |||||||| | | |||||| | |||||| || || ||||| || Sbjct 459 AAGAAACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTG 400 Query 6436 GCTAACCATATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGAAT--CTAATGGTC 6493 || |||||| |||| ||| |||| ||||||||||||||| | || | | || | Sbjct 399 GCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACG--TGGTTTGGCCAACAACC 342 Query 6494 CCATCTTCAGAGTCATGGGACAGTTTCTGGGTTATCCATCACTCATAGAGAGAACTCATG 6553 | ||||| |||| ||||| |||||| ||||| ||| ||| | | ||||| || | Sbjct 341 CTGTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACG 282 Query 6554 AATTTTTTGAGAAAAGCTTAATTTATTACAATGGGC---GTCCTGATCTAATGACCGTTC 6610 | || || ||||| || | || |||| |||| | | |||||| ||||| || | Sbjct 281 AGTTCTTCGAGAACAGTCTCATCTATT---ATGGACCTAGACCTGATTTAATGGAAGTAC 225 Query 6611 GAAATGGCACATTGTGTAATTCCACTAAG-CACCGGGTTTGTTGGAATGGGCAAAAAGGA 6669 | | ||| ||| | | | | ||| | | || |||||| | || || ||||| Sbjct 224 AAGGGGACACCTTG-ATCAGTAAAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGG 166 Query 6670 GGTTTGGAAGGACTAAGACAAAAGGGATGGAGTATTGTGAAT---CTCTTGGTTATTCAA 6726 ||| | || || | |||||||| || ||||||||||||||| ||| || | | | Sbjct 165 GGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGC-- 108 Query 6727 AGGGAAGCCAAAATTCGAAACACAGCAGTGAAGGTCTTAGCACAGGGAGATAATCAGGTT 6786 | ||||| || | ||||| || || ||| | |||||||||| || || ||||| Sbjct 107 -GAGAAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTG 49 Query 6787 ATATG 6791 ||||| Sbjct 48 ATATG 44 >seq133769 Length=136818 Score = 161 bits (178), Expect = 7e-36 Identities = 402/606 (66%), Gaps = 16/606 (3%) Strand=Plus/Minus Query 6196 GACGATTTGATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTC 6255 || || || || || ||| | ||||||||||| ||||| |||| | || || |||| Sbjct 122651 GAAGACTTAATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTT 122592 Query 6256 TTCTCATTGATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAA 6315 ||||| | ||||| |||| ||| | |||| ||||| || || | | || ||| Sbjct 122591 TTCTCTCTCATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAA 122532 Query 6316 ACATACTACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATT 6375 | || || || |||||| || | || ||||| || ||||||||| || | Sbjct 122531 GAGTTGTATGTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACA 122472 Query 6376 AAGAAGATGATGGACAGTTCATCAGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTG 6435 ||||| | | |||||||| | | |||||| | || || ||||| ||||| | Sbjct 122471 AAGAAACTTCTCGACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTA 122412 Query 6436 GCTAACCATATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGAATCTAATGGTCCC 6495 || |||||| |||| ||| | |||||||| || |||||| | |||| | | Sbjct 122411 GCCAACCATGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACT 122352 Query 6496 ATCTTCAGAGTCATGGGACAGTTTCTGGGTTATCCATCACTCATAGAGAGAACTCATGAA 6555 |||||||||||||||| |||||| |||| ||| ||| | | |||||| ||||| Sbjct 122351 GTCTTCAGAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAG 122292 Query 6556 TTTTTTGAGAAAAGCTTAATTTATTACAATGGGC---GTCCTGATCTAATGACCGTTCGA 6612 || || ||||| || || ||| |||| | | || ||| ||||| | | | Sbjct 122291 TTCTTCGAGAACAG---TCTTGTCTACTATGGACCCAGACCGGATTTAATGGACAT--GC 122237 Query 6613 AATGGCACATTGTGTAATTCCACTAAGC-----ACCGGGTTTGTTGGAATGGGCAAAAAG 6667 || || | | | || ||| | |||| | | || || ||| | || ||||||| Sbjct 122236 AAGGGGATACTTTG--ATT-AGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAG 122180 Query 6668 GAGGTTTGGAAGGACTAAGACAAAAGGGATGGAGTATTGTGAATCTCTTGGTTATTCAAA 6727 ||||| | ||||| |||||||||||||| ||||| ||||| ||||| | || | | Sbjct 122179 GAGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGC 122120 Query 6728 GGGAAGCCAAAATTCGAAACACAGCAGTGAAGGTCTTAGCACAGGGAGATAATCAGGTTA 6787 | || || |||| || ||||| ||| || ||||| || || || || || || | Sbjct 122119 GAGAGGCAAAAACCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGA 122060 Query 6788 TATGCA 6793 | |||| Sbjct 122059 TCTGCA 122054 >seq225232 Length=278362 Score = 118 bits (130), Expect = 7e-23 Identities = 402/615 (65%), Gaps = 30/615 (5%) Strand=Plus/Plus Query 6195 TGACGATTTGATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATT 6254 ||| ||||| || | ||| ||||||| ||||||||||| | || | | |||||||| Sbjct 38711 TGATGATTTAATCACTGGCCTAAAGGGCAAAGAAAGAGAGATCAAGAGGGAGGGGAGATT 38770 Query 6255 CTTCTCATTG--ATGTCATGGA-GATTAAGGGAATATTTTGTGATCACGGAGTACTTA-- 6309 |||| || |||||||||| ||| | | |||| || || || || || | Sbjct 38771 --TCTCCTTCTCATGTCATGGAAGATGCAACAATTATTC-GTCATGACTGAACACGTCTT 38827 Query 6310 ATCAAAACATACTACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCG 6369 ||||| || | ||||| |||||| ||| | | |||||||| |||||||| Sbjct 38828 ATCAAGGAATTTCATGTTCCATTGTTTTCGGGCCTTAAAATGGCAGACGACCTCACTAGA 38887 Query 6370 GTGATTAAGAAGATGATGGACAGTTCA-TCAGGTCAAGGGCTCGATGATTATTCATCAGT 6428 |||| ||| ||||| | |||| ||| ||| ||||| | | |||| || | | Sbjct 38888 GTGACTAAAAAGATTCTTGACAACTCAATCAAC-CAAGGTCAAGTTGATAATCGTTGCAT 38946 Query 6429 TTGTTTGGCTAACCATATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGAATCTAA 6488 || | | || |||||| | ||||||||||| || || || || || ||| ||| | || Sbjct 38947 TTCTCTAGCCAACCATGTGGACTACGAGAAATGAAACAATCACCAGAGAGCCGAAGCAAA 39006 Query 6489 TGGTCCCATCTTCAGAGTCATGGGACAGTTTCTGGGTTATCCATCACTCATAGAGAGAAC 6548 | ||| |||| | |||||| | | || | ||| ||| | | | |||| Sbjct 39007 CGATCCTGTCTTTACCATCATGGTAAAATTCTTAGGTCTCCCAAATGCCTTTGCAAGAAT 39066 Query 6549 TCATGAATTTTTTGAGAAAAGCTTAATTTATTACAATGGGC---GTCCTGATCTAATGAC 6605 |||||| ||||| | | ||| | | || || ||| | | |||||||| ||| Sbjct 39067 TCATGAGTTTTTCCAACACAGCCTTGTGTACTA---TGGACCAAGGCCTGATCTGATG-- 39121 Query 6606 CGTTCGAAATGGC---ACATTG--TGTAATTCCACTAAGCA--CCGGGTTTGTTGGAATG 6658 ||| ||| | ||| || || | | | | || || |||||| | | Sbjct 39122 -----GAAGTGGTTGGAGATTCCCTGCAAAACAAGGGATCTTTCCCCGTGTGTTGGGAGG 39176 Query 6659 GGCAAAAAGGAGGTTTGGAAGGACTAAGACAAAAGGGATGGAGTATTGTGAATCTCTTGG 6718 | || ||| || ||||||| |||| |||| |||||||| || || || || |||| Sbjct 39177 GCCAGTTAGGGGGACTGGAAGGGTTAAGGCAAAGAGGATGGAGCATCGTCAACCTTTTGG 39236 Query 6719 TTATTCAAAGGGAAGCCAAAATTCGAAACACAGCAGTGAAGGTCTTAGCACAGGGAGATA 6778 || | | ||| || ||||||| ||| ||||| || ||| ||| || || ||||||| Sbjct 39237 TTTTACTAAGAGAGGCCAAAACTCGCAACACCCTGGTAAAGACCTTGGCCCAAGGAGATA 39296 Query 6779 ATCAGGTTATATGCA 6793 |||| ||||| |||| Sbjct 39297 ATCAAGTTATCTGCA 39311 >seq292816 Length=4775 Score = 116 bits (128), Expect = 3e-22 Identities = 254/373 (68%), Gaps = 13/373 (3%) Strand=Plus/Minus Query 6196 GACGATTTGATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTC 6255 || || ||| |||||||| | ||||| ||||| |||||| |||||| | || ||||| Sbjct 1765 GATGACTTGGTAATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAAAAGGAAGGCAGATTT 1706 Query 6256 TTCT-CATTGATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAA 6314 || | || | |||||||||| | | | | ||| |||| || ||| || | || || Sbjct 1705 TTTTTCACTCATGTCATGGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATAAA 1646 Query 6315 AACATACTACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCAC-------AT 6367 ||| || ||||| | ||| || || ||||||||||| || ||||| || Sbjct 1645 GGAATATTATGTTCCTCTTTTTTCTGGATTGACTATGGCAGACGATCTCACCAAAGTTAT 1586 Query 6368 CGGTGATTAAGAAGATGATG-GACAGTTCATCAGGTCAAGGGCTCGATGATTATTCATCA 6426 | ||| ||| | | || | | || | |||||||| | | || ||||||||| Sbjct 1585 AGAAAGTTACGAAAAAGTTGCTAGAACTCTGCCGGTCAAGGCCAGGTCGACTATTCATCA 1526 Query 6427 GTTTGTTTGGCTAACCATATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGAATCT 6486 | || | |||||| | |||||| | |||||||||||||||||| | ||| | Sbjct 1525 ATCACCTTACCCAACCATGTAGACTACAAAAAGTGGAATAACCATCAACGTGCCGAAGCC 1466 Query 6487 AATGGTCCC-ATCTTCAGAGTCATGGGACAGTTTCTGGG-TTATCCATCACTCATAGAGA 6544 || |||| | |||| ||| |||||||| |||||||| ||||| | | | || | Sbjct 1465 AACTATCCCGCTTTTCA-AGTAATGGGACAATTTCTGGGACTATCC-GAAGTGTTTGACA 1408 Query 6545 GAACTCATGAATT 6557 |||||||||| || Sbjct 1407 GAACTCATGAGTT 1395 >seq49187 Length=20191 Score = 114 bits (126), Expect = 9e-22 Identities = 222/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 6203 TGATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCAT 6262 ||||||| || | || | ||| ||||||||| | || | || | ||||||||||| Sbjct 6353 TGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCTTCTCGC 6412 Query 6263 TGATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATACT 6322 | ||||| |||| | ||| |||| | || | || ||| ||||||| || | || Sbjct 6413 TCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGGAGTTCT 6472 Query 6323 ACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAGA 6382 | || ||| | || ||| || |||||||| ||||| || || ||||| ||||| Sbjct 6473 ATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACAAAGAAAC 6532 Query 6383 TGATGGACAGTTC-ATCAGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTGGCTAAC 6441 | | || ||||| |||| ||||||| || | ||| || ||| | |||| || Sbjct 6533 TCCTAGATAGTTCGATCA-ACCAAGGGCAGAATTACTATAACTCCATTTCTCTGGCAAAT 6591 Query 6442 CATATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGAATCTAATGGTCCCATCTTC 6501 || | || || || || |||||||||||||| | ||| | ||| |||| | ||| Sbjct 6592 CACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTGTGTTC 6651 Query 6502 AGAGTCATGGGACAGTTTCTGGGTT 6526 |||| ||||| ||||| || |||| Sbjct 6652 CGAGTAATGGGTCAGTTCCTAGGTT 6676 >seq283927 Length=152763 Score = 95.1 bits (104), Expect = 9e-16 Identities = 265/405 (65%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 6178 GAAAATGGAATGGATGATGACGATTTGATAATTGGATTAAAGGGAAAAGAAAGAGAATTG 6237 || || ||| |||| || ||| | || ||||||||||| ||||| ||| | ||| | Sbjct 1686 GACAACGGATTGGACAGAGATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATC 1627 Query 6238 AAAATAGCTGGGAGATTCTTCTCATTGATGTCATGGAGATTAAGGGAATATTTTGTGATC 6297 || | | || ||||||||||| | ||||| |||| | ||||||| || || Sbjct 1626 AAGAAGGAAGGAAGATTCTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATT 1567 Query 6298 ACGGAGTACTTAATCAAAACATACTACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGAT 6357 || || || || | || || |||| | ||| | ||| || | || |||||||| Sbjct 1566 ACAGA-AACCTACTAAAGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGAC 1508 Query 6358 GACCTCACATCGGTGATTAAGAAGATGATGGACAGTTCATCAGGTCAAGGGCTCGATGAT 6417 ||| | | || || ||| || | |||| |||| | || ||||||| || ||| Sbjct 1507 GACTTGATGGAAGTCGCAAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGAT 1448 Query 6418 TATTCATCAGTTTGTTTGGCTAACCATATTGACTACGAGAAGTGGAATAACCATCAAAGA 6477 || || || | || |||||||| || ||||| || |||||||| || |||||| Sbjct 1447 TACCAATTGATTACCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGA 1388 Query 6478 AAGGAATCTAATGGTCCCATCTTCAGAGTCATGGGACAGTTTCTGGGTTATCCATCACTC 6537 || |||| || | ||||| || ||||| || || |||| ||| | Sbjct 1387 ---GATGCTAACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTG 1331 Query 6538 ATAGAGAGAACTCATGAATTTTTTGAGAAAAGCTTAATTTATTAC 6582 || | || || |||| ||||| || || |||||||||||| Sbjct 1330 TTAACTCGCACCCACAAATTCTTTGAAAACAGTTTAATTTATTAC 1286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35330923919056