Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025255.1 Length=11135 Score E Sequences producing significant alignments: (Bits) Value seq133769 140 2e-29 seq176488 129 4e-26 seq283927 113 3e-21 seq49187 87.8 1e-13 >seq133769 Length=136818 Score = 140 bits (154), Expect = 2e-29 Identities = 385/589 (65%), Gaps = 6/589 (1%) Strand=Plus/Minus Query 6268 TCATAGGACTCAAAGGGAAAGAGAGAGAATTAAAAATTGCGGGAAGATTCTTTTCTTTGA 6327 |||| ||||| || || ||||||||||| | || | | ||| |||| || ||| | | Sbjct 122641 TCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCA 122582 Query 6328 TGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTATTTGATTAAGACGCACTTTG 6387 |||| |||||| | || | || |||||| || || || | || || | | || Sbjct 122581 TGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATG 122522 Query 6388 TCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGACAGCGGTGATAAAGAAGATGA 6447 | || |||||| || | || |||||||| ||| | ||| || | |||||| | Sbjct 122521 TACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTC 122462 Query 6448 TGGACACATCTTCAGGACAAGGCTTAGATAATTATGAATCCATTTGTATAGCCAACCATA 6507 | |||| |||| | ||||| | | || |||||||||| ||||||||||| Sbjct 122461 TCGACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCATG 122402 Query 6508 TTGACTATGAGAAGTGGAACAATCATCAAAGAAAAGAGTCGAACGGGCCCGTGTTCAAGG 6567 |||| || | |||||||||||||||||| | | | ||| | || |||| | Sbjct 122401 TTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAG 122342 Query 6568 TGATGGGTCAATTCTTGGGATATCCACGTCTGATTGAGAGAACTCATGAATTTTTTGAGA 6627 | |||||||| || ||||| ||| || | | |||||| ||||| || || |||| Sbjct 122341 TCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGA 122282 Query 6628 AGAGTCTGATATATTACAATGGAC---GACCAGATCTGATGCGGGTTCGAGGAAATTCTC 6684 | ||||| | ||| |||||| |||| ||| | ||| | | ||| || || Sbjct 122281 ACAGTCTTGT---CTACTATGGACCCAGACCGGATTTAATGGACATGCAAGGGGATACTT 122225 Query 6685 TAGTCAACGCCTCATCTTTAAATGTCTGCTGGGAGGGTCAAGCTGGGGGATTAGAAGGAC 6744 | | | | || | || |||||||| || ||| || || | ||||| | Sbjct 122224 TGATTAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCC 122165 Query 6745 TGCGACAGAAGGGATGGAGTATTCTAAATTTGCTTGTCATTCAGAGAGAAGCAAAAATAA 6804 | |||| ||||| ||||| ||| ||||| | || || | | | |||| ||||||| Sbjct 122164 TAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAACCC 122105 Query 6805 GGAACACCGCCGTGAAAGTGCTAGCTCAAGGTGACAATCAGGTGATATG 6853 | ||||| || ||| |||| ||||| ||||| || ||||| || Sbjct 122104 GTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTG 122056 >seq176488 Length=2532 Score = 129 bits (142), Expect = 4e-26 Identities = 390/598 (65%), Gaps = 11/598 (2%) Strand=Plus/Minus Query 6264 CTTG-TCATAGGACTCAAAGGGAAAGAGAGAGAATTAAAAATTGCGGGAAGATTCTTTTC 6322 |||| |||| || | |||||||| ||||||||| |||| | | | | |||||| || Sbjct 634 CTTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTCTTCTC 575 Query 6323 TTTGATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTATTTGATTAAGACGCA 6382 | ||||| |||||| | || | || |||||| || || || | || || | | Sbjct 574 CCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAA--GAA 517 Query 6383 CTTT--GTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGACAGCGGTGATAAAG 6440 | | || || |||| || || | || ||||| |||||| | ||| ||| | |||| Sbjct 516 TTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAG 457 Query 6441 AAGATGATGGACACATCTTCAGGACAAGGCTTAGATAATTATGAATCCATTTGTATAGCC 6500 || | | |||| |||| | ||||| | | |||| ||||||||| | ||| Sbjct 456 AAACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCC 397 Query 6501 AACCATATTGACTATGAGAAGTGGAACAATCATCAAAGAAAAGAGTCGAACGGGCCCGTG 6560 |||||| |||| || |||| ||||| || |||||| | | | ||| || || Sbjct 396 AACCATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTC 337 Query 6561 TTCAAGGTGATGGGTCAATTCTTGGGATATCCACGTCTGATTGAGAGAACTCATGAATTT 6620 ||| ||||||||||| || |||| ||| || | | ||||| || || || Sbjct 336 TTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTC 277 Query 6621 TTTGAGAAGAGTCTGATATATTACAATGGAC---GACCAGATCTGATGCGGGTTCGAGGA 6677 || ||||| ||||| || |||| |||||| |||| ||| | ||| || | ||| Sbjct 276 TTCGAGAACAGTCTCATCTATT---ATGGACCTAGACCTGATTTAATGGAAGTACAAGGG 220 Query 6678 AATTCTCTAGTCAACGCCTCATCTTTAAATGTCTGCTGGGAGGGTCAAGCTGGGGGATTA 6737 | | | ||| || || |||||| ||||| || || ||||| | Sbjct 219 GACACCTTGATCAGTAAAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTC 160 Query 6738 GAAGGACTGCGACAGAAGGGATGGAGTATTCTAAATTTGCTTGTCATTCAGAGAGAAGCA 6797 || || || |||| || || ||||||||| | |||||||| || | | ||||||| Sbjct 159 GAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAAGCT 100 Query 6798 AAAATAAGGAACACCGCCGTGAAAGTGCTAGCTCAAGGTGACAATCAGGTGATATGTA 6855 || | | || ||| || || ||||| || || ||||| ||||||||||||| Sbjct 99 AAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATGTA 42 >seq283927 Length=152763 Score = 113 bits (124), Expect = 3e-21 Identities = 271/408 (66%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 6258 GATGATCTTGTCATAGGACTCAAAGGGAAAGAGAGAGAATTAAAAATTGCGGGAAGATTC 6317 |||||||| |||| ||| | ||||| || || | ||| | || | | ||||||||| Sbjct 1668 GATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTC 1609 Query 6318 TTTTCTTTGATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTATTTGATTAAG 6377 || || | ||||||||||| || | | ||||| ||||| || || | | | ||| Sbjct 1608 TTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAG 1550 Query 6378 ACGCACTTTGTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGACAGCGGTGATA 6437 || | || | ||| ||| | |||||||| || ||||||| | || | Sbjct 1549 GAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCA 1490 Query 6438 AAGAAGATGATGGACACATCTTCAGGACAAGGCTTAGATAATTATGAATCCATTTGTATA 6497 || ||| || | |||| || | |||||||| || |||| ||| ||| || Sbjct 1489 AAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATT 1430 Query 6498 GCCAACCATATTGACTATGAGAAGTGGAACAATCATCAAAGAAAAGAGTCGAACGGGCCC 6557 ||||||||||| || || || || ||||| ||||| ||||| ||| | ||| || Sbjct 1429 GCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAG---AGATGCTAACAACCCG 1373 Query 6558 GTGTTCAAGGTGATGGGTCAATTCTTGGGATATCCACGTCTGATTGAGAGAACTCATGAA 6617 ||||||| |||||||| |||||||||||| ||| || | | || || || Sbjct 1372 GTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAA 1313 Query 6618 TTTTTTGAGAAGAGTCTGATATATTACAATGGACGACCAGATCTGATG 6665 || ||||| || ||| | || |||||| ||| || || |||||| Sbjct 1312 TTCTTTGAAAACAGTTTAATTTATTACGGACCACGTCCGGACCTGATG 1265 >seq49187 Length=20191 Score = 87.8 bits (96), Expect = 1e-13 Identities = 392/615 (64%), Gaps = 21/615 (3%) Strand=Plus/Plus Query 6258 GATGATCTTGTCATAGGACTCAAAGGGAAAGAGAGAGAATTAAAAATTGCGGGAAGATTC 6317 ||||| || | || || ||||||| || || |||||| |||| | | || ||||||| Sbjct 6346 GATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTC 6405 Query 6318 TTTTCTTTGATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTATTTGATTAAG 6377 || || | ||||| ||||| || || | || | |||| || ||| | || || ||| Sbjct 6406 TTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAG 6465 Query 6378 ACGCACTTTGTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGACAGCGGTGATA 6437 | || ||| || | || || ||||| ||||| ||||| |||| ||||| | Sbjct 6466 GAGTTCTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACA 6525 Query 6438 AAGAAGATGATGGACACATCT-TCAGGACAAGGCTTAGATAATTATGAATCCATTTGTAT 6496 ||||| | | || | || ||| | ||| | || | ||| | ||||||| | | Sbjct 6526 AAGAAACTCCTAGATAGTTCGATCAACCAAGGGCAGA-ATTACTATAACTCCATTTCTCT 6584 Query 6497 AGCCAACCATATTGACTATGAGAAGTGGAACAATCATCAAAGAAAAGAGTCGAACGGGCC 6556 || || || | || ||||| || ||||| || ||||| | ||| |||| | || Sbjct 6585 GGCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCC 6644 Query 6557 CGTGTTCAAGGTGATGGGTCAATTCTTGGGATATCCACGTCTGATTGAGAGAACTCATGA 6616 |||||| || |||||||| ||| | || | || ||| | | | |||||||| Sbjct 6645 TGTGTTCCGAGTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCATGA 6704 Query 6617 ATTTTTTGAGAAGAGTCTGATATATTACAATGG-------ACGA------CCAG-ATCTG 6662 || ||| | |||| | || | | | |||| ||| | || Sbjct 6705 GTTCTTTCGTAGCGGTCTCGTGTACTGCGGCGAGACCGCTACGAAATCACCCACTACCTT 6764 Query 6663 ATGCGGGTTCGAGGAAATTCTCTAGTCAAC--GCCTCATCTTTAAATGTCTGCTGGGAGG 6720 ||| ||| || ||||||| ||| | | ||| ||||||||||| | Sbjct 6765 ATGGAGGTAGTGGGTGATTCTCTGAAAAACAAGGGGGA-CTTCCC--GTCTGCTGGGAAG 6821 Query 6721 GTCAAGCTGGGGGATTAGAAGGACTGCGACAGAAGGGATGGAGTATTCTAAATTTGCTTG 6780 | || ||| || | |||||||| || || ||||| ||||| ||| | ||||| |||| Sbjct 6822 GCCAGCTTGGCGGCCTTGAAGGACTTCGGCAAAAGGGCTGGAGCATTGTGAATTTACTTG 6881 Query 6781 TCATTCAGAGAGAAGCAAAAATAAGGAACACCGCCGTGAAAGTGCTAGCTCAAGGTGACA 6840 || | |||| |||||||| ||| ||||| | | ||| || | || || || | Sbjct 6882 TCCTCTTAAGAGGAGCAAAAACAAGAAACACACTCATCAAAACCCTGGAACACGGGGATA 6941 Query 6841 ATCAGGTGATATGTA 6855 | |||||||| |||| Sbjct 6942 ACCAGGTGATCTGTA 6956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35369164298512