Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025340.1 Length=11176 Score E Sequences producing significant alignments: (Bits) Value seq133769 105 5e-19 >seq133769 Length=136818 Score = 105 bits (116), Expect = 5e-19 Identities = 379/586 (65%), Gaps = 9/586 (2%) Strand=Plus/Minus Query 6202 TCAAAACCTTCTTGCAGAATGTCAATGACCACGGGCTCAGCCCCGAAGATCTTGTAATCG 6261 ||||| |||||| | | |||||||| | || ||| | ||||| | | |||| Sbjct 122695 TCAAAGAGTTCTTGGAAGAGATCAATGACAAGGGCCTCCCCAGAGAAGACTTAATCATCG 122636 Query 6262 GGTTGAAACCAAAAGAAAGGGAGTTAAAGGACGAAGGTCGATTTTTCTCTCTCATGGGTT 6321 | |||| |||||| || ||| | ||| | || ||||||||||||||||||||| | Sbjct 122635 GACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTCGT 122576 Query 6322 GGAATCTGAGGTTGTACTTTGTTATCACTGAGTACCTCATTAAAAAACTCTTTGTCCCAC 6381 |||| | | |||||||| || || | ||||| ||| | | | ||| |||| Sbjct 122575 GGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTACCAC 122516 Query 6382 TATTCAAAGGGCTCACCATGGCTGACGACCTCAACACTGTCACTAAGAAGATGATCGCTG 6441 | || | || || || ||||| |||||||||| | || || ||||| | ||| Sbjct 122515 TGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTCGACA 122456 Query 6442 CAACTGAAGGCCAGGGGCTATGTGATTACTCA--CGTGTGTACATAGCCAATTCACTTGA 6499 || | || || | | || |||||| | | ||| ||||||| |||| Sbjct 122455 GTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGT--GTAGCCAACCATGTTGA 122398 Query 6500 TTATGAGAAGTGGAACAACAATCAACGATACGAGTCCAACCAACATGTGTTTCGAGTTAT 6559 ||| | ||||||||||| ||||||| | | ||| | ||| || |||| || Sbjct 122397 TTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAGTCAT 122338 Query 6560 GGGGAAGTTTTTGGGCCTCCCAGAGATATTCTCATTGACACACAAGTTTTTTCA-ATCAT 6618 ||| ||||| |||| || ||||| | ||| || || |||| || | | || Sbjct 122337 GGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAACA- 122279 Query 6619 CACTGGTATACTATTGTGACAGACCTGATCTAATGAGGGTGACCGAGAATTCACTCGAAA 6678 || || |||||| | |||||| ||| ||||| || | | || ||| | Sbjct 122278 GTCTTGTCTACTATGGACCCAGACCGGATTTAATGGACATGCAAGGGGAT--ACT-TTGA 122222 Query 6679 ATGTCAACGAAGAAACGCCAGTGTGCTGGGAGGGGCAGGCGGGCGGATTCGAAGGCTTAA 6738 | ||| | ||| || || |||||||| || || || || |||||||| ||| Sbjct 122221 TTAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAA 122162 Query 6739 GACAAAAAGGATGGAGCATTGTCAACTATCTCATCCTCCGGCGGGA 6784 ||||||| || ||||||||||| || |||| | |||| ||| || Sbjct 122161 GACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGA 122116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35499818928320