Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025341.1 Length=11139 Score E Sequences producing significant alignments: (Bits) Value seq133769 127 1e-25 seq176488 125 5e-25 seq90283 102 6e-18 seq292816 87.8 1e-13 >seq133769 Length=136818 Score = 127 bits (140), Expect = 1e-25 Identities = 341/511 (67%), Gaps = 24/511 (5%) Strand=Plus/Minus Query 6264 TTGATCATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGGTTCTTTTCA 6323 || ||||||||| |||| || ||||||||||| ||||| | | || || || || || Sbjct 122645 TTAATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCT 122586 Query 6324 CTCATGTCGTGGAAACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCAAAGAACAT 6383 |||||||||||||| || || |||| ||||| |||||| | || || ||||| Sbjct 122585 CTCATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTG 122526 Query 6384 TTCGTCCCTCTCTTCAATGGATTGACTATGGCGGATGACATGACCACCGTAATATCAAAA 6443 | || || || || | |||| | || |||||||| ||| | || | || | | ||| Sbjct 122525 TATGTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAA 122466 Query 6444 CTAATGGATCGCACTCAGGGCCAAGGAGGAGAGGACTA--CACCCAAGTTTGCATTGCTA 6501 || | || | || |||||| || ||||| || ||| |||| | || | Sbjct 122465 CTTCTCGACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCA--TTTGTGTAGCCA 122408 Query 6502 ATCATATCGATTATGAAAAGTGGAACAATCATCAGAGAAAGCGTGCAACCGGACCTGTGT 6561 | ||| | ||||| ||||||||||||||||||| | || | | |||| | Sbjct 122407 ACCATGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCT 122348 Query 6562 TCATAGTCATGGGACAATTCCTTGGATTTCCTAAACTGATCTATAGAACACATGAGTTCT 6621 ||| ||||||||| || || | ||| | || |||| || ||||| |||||||||| Sbjct 122347 TCAGAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCT 122288 Query 6622 TTGA-ATCTAGCTGGGTGTATTACAATG---CTAGACCTGATTTAATGGTCATCCGAGAT 6677 | || | | || ||| ||| ||| | ||||| |||||||||| ||| | || Sbjct 122287 TCGAGAACAGTCT---TGT-CTACTATGGACCCAGACCGGATTTAATGGACATGCAAG-- 122234 Query 6678 GGGA------GATTAGAAAATCTAGGTCCTGAAATAGTTTGTTGGAATGGACAAGATGGG 6731 |||| |||||| ||| | || || | || || ||| | |||||| | || Sbjct 122233 GGGATACTTTGATTAGCAAAGC-AG--ACT-ATCCCGTATGCTGGGAAGGACAAAAAGGA 122178 Query 6732 GGGTTAGAAGGGCTACGACAGAAAGGATGGA 6762 || | ||||| ||| |||| || || |||| Sbjct 122177 GGTCTCGAAGGCCTAAGACAAAAGGGGTGGA 122147 >seq176488 Length=2532 Score = 125 bits (138), Expect = 5e-25 Identities = 390/600 (65%), Gaps = 18/600 (3%) Strand=Plus/Minus Query 6264 TTGATCATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAG-GACGGTTCTTTTC 6322 |||||||| || ||||||||||| ||||||||||| |||| || || | | ||||| || Sbjct 633 TTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGT-AAAGAAAGAGAGGCAATTCTTCTC 575 Query 6323 ACTCATGTCGTGGAAACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCAAAGAACA 6382 |||||||| ||||| |||| |||| ||||| |||||| | || || |||||| Sbjct 574 CCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAATT 515 Query 6383 TTTCGTCCCTCTCTTCAATGGATTGACTATGGCGGATGACATGACCACCGTAATATCAAA 6442 | ||| || || ||||| ||| | || ||||| |||||| | || | || | | || Sbjct 514 GTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAA 455 Query 6443 ACTAATGGATCGCACTCAGGGCCAAGGAGGAGAGGACTACACCCAAGTTTGCATTGCTAA 6502 ||| | || | || |||||| | || ||| || |||| | || || Sbjct 454 ACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAA 395 Query 6503 TCATATCGATTATGAAAAGTGGAACAATCATCAGAGAAAGCGTGCAACCGGACCTGTGTT 6562 ||| | ||||| | || ||||| || ||||| | || | | ||||| || Sbjct 394 CCATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTT 335 Query 6563 CATAGTCATGGGACAATTCCTTGGATTTCCTAAACTGATCTATAGAACACATGAGTTCTT 6622 | ||| ||||| || || | || | || |||| || ||||| || |||||||| Sbjct 334 CCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTT 275 Query 6623 TGAATCTAGCTGGGTGTATTACAATGCTAGACCTGATTTAATGGTCATCCGAGATGGGA- 6681 || || | ||||| |||||||||||||||||| | | || |||| Sbjct 274 CGAGAACAGTCTCATCTATTATGGACCTAGACCTGATTTAATGGAAGTACAAG--GGGAC 217 Query 6682 -----GATTAGAAAATCTAG--GTCCTGAAATAGTTTGTTGGAATGGACAAGATGGGGGG 6734 ||| || ||| | || |||| || |||||| | || || | ||||| Sbjct 216 ACCTTGATCAGTAAAGCAAGTTATCCT------GTCTGTTGGGAAGGCCAGAAAGGGGGT 163 Query 6735 TTAGAAGGGCTACGACAGAAAGGATGGACAGTGGTCGGGTTACTCATGATACGGAGAGAA 6794 | || || | |||| ||||| |||| | || || ||| || | | ||||| Sbjct 162 CTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAA 103 Query 6795 GCTAGGGTTAGAAACACCGCTGTCAAGATACTGGCTCAGGGAGATAATCAGGTGATTTGT 6854 |||| | |||| ||| |||||||| || || ||||| || || |||||||| ||| Sbjct 102 GCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATGT 43 >seq90283 Length=1560 Score = 102 bits (112), Expect = 6e-18 Identities = 252/371 (68%), Gaps = 20/371 (5%) Strand=Plus/Plus Query 6265 TGATCATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGG----TTCTTT 6320 || |||| || | || ||||| || | ||||| || ||||| || || || Sbjct 234 TGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAG----AAGGAGGGGAGATTTTTC 289 Query 6321 TCACTCATGTCGTGGAAACTAAGAGAA--TATTTTGTTGTC-ACAGAATACCTAATCAAA 6377 || ||||||| ||||| ||||||| || || || ||| || || ||||| ||||| Sbjct 290 TCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGT-GTCGACCGAGTACCTCATCAAG 348 Query 6378 GAACATTTCGTCCCTCTCTTCAATGGATTGACTATGGCGGATGACATGACCACCGTAATA 6437 || | | || || |||||| |||||| || |||||||| || |||||| || | Sbjct 349 GAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACC 408 Query 6438 TCAAAACTAATGGATCGCAC--TCAGGGCCAAGGAGGAGAGGACTACACCCAAGTTTGCA 6495 ||| || ||||| | ||| |||||| ||| ||||||| | ||| Sbjct 409 AAAAAGTTACTGGATAATTCCATCAAT--CAAGGATCAGATGACTACAACTCCATTTCTC 466 Query 6496 TTGCTAATCATATCGATTATGAAAAGTGGAACAATCATCAGAGAA-AGCGTGCAACCGGA 6554 |||| || ||||| || |||||||| |||||||| || ||||| ||| || | || Sbjct 467 TTGCAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCA-GCTAACGAT 525 Query 6555 CCTGTGTTCATAGTCATGGGACAATTCCTTGGATTTCCTA-AACTGATCTATAGAACACA 6613 || | || | |||||||||||||||| | || ||| ||| | || | | |||||| Sbjct 526 CCAGCTTTAAGAGTCATGGGACAATTCATCGG-TTTACTAGAGTTGTTTGTTCAAACACA 584 Query 6614 TGAGTTCTTTG 6624 |||||||||| Sbjct 585 CGAGTTCTTTG 595 >seq292816 Length=4775 Score = 87.8 bits (96), Expect = 1e-13 Identities = 127/179 (71%), Gaps = 9/179 (5%) Strand=Plus/Minus Query 6264 TTGATCATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGG-----TTCT 6318 ||| | || ||| |||| || |||||||||||||||||| ||||| || || | Sbjct 1759 TTGGTAATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAA----AAGGAAGGCAGATTTTT 1704 Query 6319 TTTCACTCATGTCGTGGAAACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCAAAG 6378 ||||||||||||| ||||| || | | | ||| || || || |||| || || | Sbjct 1703 TTTCACTCATGTCATGGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATAAAGG 1644 Query 6379 AACATTTCGTCCCTCTCTTCAATGGATTGACTATGGCGGATGACATGACCACCGTAATA 6437 || ||| || ||||| || ||||||||||||||| || || | |||| || ||| Sbjct 1643 AATATTATGTTCCTCTTTTTTCTGGATTGACTATGGCAGACGATCTCACCAAAGTTATA 1585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35381911091664