Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025342.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq283927 125 5e-25 seq176488 125 5e-25 seq133769 118 7e-23 seq90283 96.9 2e-16 >seq283927 Length=152763 Score = 125 bits (138), Expect = 5e-25 Identities = 262/386 (68%), Gaps = 6/386 (2%) Strand=Plus/Minus Query 6238 ATGATCTCATCATTGGGTTAAAAGGGAAAGAGCGTGAAGTAAAAATTAAGGGACGATTCT 6297 |||||||||||||||| |||||||| || || ||||| | || | | ||| |||||| Sbjct 1667 ATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCT 1608 Query 6298 TCTCTTTGATGTCTTGGAGATTGAGGGAATATTTCGTTGTTACAGAATATCTTATAAAGG 6357 |||| | ||||| |||| | |||||||||| |||||||| | || |||||| Sbjct 1607 TCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGG 1549 Query 6358 AGCATTTCGTCCCATTATTCAATGGGTTGACAATGGCAGATGACATGACGACAGTGATAT 6417 | | | | || |||| || | || |||||||| ||| ||| | ||| | Sbjct 1548 AATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAA 1489 Query 6418 CGAAATTGATGGACAGAACCCAAGGTC-AGGGCGGAGAGGACTACACACAAATCTGCATC 6476 || ||| | |||| | | || | ||||| | || || ||| | || ||| Sbjct 1488 AAAAGTTGTTAGACAATTCACCGGGACAAGGGCAG-GACGATTACCAATTGATTACCATT 1430 Query 6477 GCCAATCACATTGACTATGAAAAATGGAACAATCATCAAAGAAAGGACGCCACCGGCCCT 6536 ||||| || || || || ||||||||||| ||||| |||||| || || | | ||| Sbjct 1429 GCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGA---GATGCTAACAACCCG 1373 Query 6537 GTCTTTAAGGTCATGGGACAGTTCTTGGGATTACCAAATTTAATCTATCGAACACATGAG 6596 || || | || ||||| || ||||||||| | ||||| || | ||| || || | Sbjct 1372 GTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAA 1313 Query 6597 TTCTTTGAACAGAGCTGGATTTATTA 6622 ||||||||| | || | |||||||| Sbjct 1312 TTCTTTGAAAACAGTTTAATTTATTA 1287 >seq176488 Length=2532 Score = 125 bits (138), Expect = 5e-25 Identities = 416/641 (65%), Gaps = 12/641 (2%) Strand=Plus/Minus Query 6198 GAGTTCCTTGAGAAAGTTAATAACGAGGGCCTGCCTGCAA--ATGATCTCATCATTGGGT 6255 ||||| || || | | ||| || ||||||| || ||| | || | |||||||| | Sbjct 678 GAGTTTCTCGAAGAGATCAATGACAAGGGCCTCCC--CAAGGAAGACTTGATCATTGGCT 621 Query 6256 TAAAAGGGAAAGAGCGTGAAGTAAAAATTAAGGGACGATTCTTCTCTTTGATGTCTTGGA 6315 | |||||||| ||| | |||||||| | || | | ||||||||| | |||||||||| Sbjct 620 TGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTCATGTCTTGGA 561 Query 6316 GATTGAGGGAATATTTCGTTGTTACAGAATATCTTATAAAGGAGCATTTCGTCCCATTAT 6375 || ||| |||| || || |||||| |||||||||| || | ||| ||| | | Sbjct 560 AGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAATTGTACGTGCCACTGT 501 Query 6376 TCAATGGGTTGACAATGGCAGATGACATGACGACAGTGATATCGAAATTGATGGACAGAA 6435 |||| || | || |||||||||||| | || | || | | |||| | | ||||| Sbjct 500 TCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAACTTCTCGACAGTT 441 Query 6436 CCCAAGGTCAGGGCGGAGAGGACTACACACAAATCTGCATCGCCAATCACATTGACTATG 6495 | | ||| || | || ||| | || || | ||||| || |||| || Sbjct 440 CTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAACCATGTTGATTACC 381 Query 6496 AAAAATGGAACAATCATCAAAGAAAGGACGCCACCGGCCCTGTCTTTAAGGTCATGGGAC 6555 | |||||||| || |||||| | |||| | ||||||||| || ||||| | Sbjct 380 AGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTCCGAGTGATGGGTC 321 Query 6556 AGTTCTTGGGATTACCAAATTTAATCTATCGAACACATGAGTTCTTTGAACAGAGCTGGA 6615 |||| |||| | ||| | | || |||| || |||||||| || | || | Sbjct 320 AGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTTCGAGAACAGTCTCA 261 Query 6616 TTTATTATAATGGTAGGCCTGATTTGATGGCAGTTGTTGATGGGCGAC--TGATCAACTC 6673 | |||||| ||| |||||||| |||| ||| | ||| || |||||| Sbjct 260 TCTATTATGGACCTAGACCTGATTTAATGGAAGT--ACAAGGGGACACCTTGATCAGTAA 203 Query 6674 TGGAACCAATATAGTCTGTTGGGACGGTCAAGCTGGAGGGTTAGAAGGATTGAGACAGAA 6733 | || || ||||||||||| || || || || | || || |||||||| || Sbjct 202 AGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTGAGACAAAA 143 Query 6734 GGGTTGGACGGTTGTAGGACTCT--TGATGATCATAAGAGAAGCTAGAGTTCGTAACACA 6791 || |||| |||| || | | | || || | ||||||||| || || || Sbjct 142 AGGGTGGAGTATTGT--GAATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCGAAATACC 85 Query 6792 GCTGTCAAAATTTTGGCTCAGGGAGACAACCAAGTGATCTG 6832 |||||| | | || ||||| |||||||| ||||| || Sbjct 84 CTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATG 44 >seq133769 Length=136818 Score = 118 bits (130), Expect = 7e-23 Identities = 414/640 (65%), Gaps = 6/640 (1%) Strand=Plus/Minus Query 6198 GAGTTCCTTGAGAAAGTTAATAACGAGGGCCTGCCTGCAAATGATCTCATCATTGGGTTA 6257 |||||| | || | | ||| || ||||||| || | | || | ||||| || | Sbjct 122690 GAGTTCTTGGAAGAGATCAATGACAAGGGCCTCCCCAGAGAAGACTTAATCATCGGACTG 122631 Query 6258 AAAGGGAAAGAGCGTGAAGTAAAAATTAAGGGACGATTCTTCTCTTTGATGTCTTGGAGA 6317 || || |||||| | || || || | |||| ||||| |||||| | ||||| |||| Sbjct 122630 AAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTCGTGGAAG 122571 Query 6318 TTGAGGGAATATTTCGTTGTTACAGAATATCTTATAAAGGAGCATTTCGTCCCATTATTC 6377 || | |||| || || |||||| |||| ||||| ||| | || ||| | || Sbjct 122570 TTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTACCACTGTTT 122511 Query 6378 AATGGGTTGACAATGGCAGATGACATGACGACAGTGATATCGAAATTGATGGACAGAACC 6437 | ||| | |||||||| || ||| | || | ||| | | |||| | | ||||| | Sbjct 122510 AGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTCGACAGTTCT 122451 Query 6438 CAAGGTCAGGGCGGAGAGGACTACACACAAATCTGCATCGCCAATCACATTGACTATGAA 6497 | ||| || || |||||| || || || | ||||| || |||| || || Sbjct 122450 TTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCATGTTGATTACCAA 122391 Query 6498 AAATGGAACAATCATCAAAGAAAGGACGCCACCGGCCCTGTCTTTAAGGTCATGGGACAG 6557 || ||||||||||||||| | || | | ||||||| | |||||||| ||| Sbjct 122390 AAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAGTCATGGGTCAG 122331 Query 6558 TTCTTGGGATTACCAAATTTAATCTATCGAACACATGAGTTCTTTGAACAGAG-CTGGAT 6616 || ||||| ||||| | | || |||| ||||||||||| || | || || | | Sbjct 122330 TTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAACAGTCTTG-T 122272 Query 6617 TTATTATAATGGTAGGCCTGATTTGATGGCAGTTGTTGATGGGCGAC--TGATCAACTCT 6674 || ||| || || ||||| |||| | || | ||| || |||| | | Sbjct 122271 CTACTATGGACCCAGACCGGATTTAATGG-ACATG-CAAGGGGATACTTTGATTAGCAAA 122214 Query 6675 GGAACCAATATAGTCTGTTGGGACGGTCAAGCTGGAGGGTTAGAAGGATTGAGACAGAAG 6734 | | | || || || ||||| || ||| ||||| | ||||| | ||||| ||| Sbjct 122213 GCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACAAAAG 122154 Query 6735 GGTTGGACGGTTGTAGGACTCTTGATGATCATAAGAGAAGCTAGAGTTCGTAACACAGCT 6794 || |||| ||||| || | | || | |||| || | | |||||||| Sbjct 122153 GGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAACCCGTAACACTTTA 122094 Query 6795 GTCAAAATTTTGGCTCAGGGAGACAACCAAGTGATCTGCA 6834 || |||| || || || || ||||||||||||||||||| Sbjct 122093 GTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTGCA 122054 >seq90283 Length=1560 Score = 96.9 bits (106), Expect = 2e-16 Identities = 242/362 (67%), Gaps = 8/362 (2%) Strand=Plus/Plus Query 6247 TCATTGGGTTAAAAGGGAAAGAGCGTGAAGTAAAAATTAAGGGACGATTCTTCTCTTTGA 6306 |||| ||| | || ||||| || || ||||| || | |||| |||| ||||| | | Sbjct 237 TCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCCTCA 296 Query 6307 TGTCTTGGAGATTGAGGGAA--TATTTCGTTGTTACAGAATATCTTATAAAGGAGCATTT 6364 ||| |||| || || || || ||||| || || || || || ||||||| | Sbjct 297 TGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGTA 356 Query 6365 CGTCCCATTATTCAATGGGTTGACAATGGCAGATGACATGACGACAGTGATATCGAAATT 6424 || || | ||| ||| || |||||||| || || |||| | ||||| || || Sbjct 357 TGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAAAGTT 416 Query 6425 GATGGACAGAACC--CAAGGTCAGGGCGGAGAGGACTACACACAAATCTGCATCGCCAAT 6482 |||| | || ||| ||| || ||| ||||||| || | | || || Sbjct 417 ACTGGATAATTCCATCAA--TCAAGGATCAGATGACTACAACTCCATTTCTCTTGCAAAC 474 Query 6483 CACATTGACTATGAAAAATGGAACAATCATCAAAGAAAGGACGCCACCGGCCCTGTCTTT 6542 || || |||||||||||||||||||| || || || | || | || || | |||| Sbjct 475 CATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAG-CTTT 533 Query 6543 AAG-GTCATGGGACAGTTCTTGGGATTACCAAATTTAATCTATCGAACACATGAGTTCTT 6601 ||| ||||||||||| ||| | || |||| | | || | || |||||| |||||||| Sbjct 534 AAGAGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAACACACGAGTTCTT 593 Query 6602 TG 6603 || Sbjct 594 TG 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35321363824192