Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= NC_025353.1
Length=11070
Score E
Sequences producing significant alignments: (Bits) Value
seq176488 131 1e-26
seq90283 127 1e-25
seq283927 118 7e-23
seq225232 100 2e-17
>seq176488
Length=2532
Score = 131 bits (144), Expect = 1e-26
Identities = 404/612 (66%), Gaps = 30/612 (5%)
Strand=Plus/Minus
Query 6230 GGAAGATTTGGTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAA-ATTGGCCGGCAGAt 6288
|||||| ||| |||| || |||||||||| || ||||| |||| | | |||| ||
Sbjct 640 GGAAGACTTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCA-AT 582
Query 6289 ttttttCTCTTATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAATAA 6348
| || || || ||||| |||||||| || |||| || ||| || || || | ||||
Sbjct 581 TCTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAA 522
Query 6349 AGACACATTTT--GTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGT 6406
| | | ||| | || || |||| || ||| | || ||||||||||| || ||| ||
Sbjct 521 A-AGA-ATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGT 464
Query 6407 CATAAAGAAAATGATGGATACCTCATCAGGACAGGGTTTGGATAATTACGACTCAATTTG 6466
| ||||||| | | || | || | | || || | ||||| ||| |||||
Sbjct 463 TACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTG 404
Query 6467 CATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGG 6526
| ||||| || ||||||| |||| ||||| || || || || ||||
Sbjct 403 TGTGGCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAA 344
Query 6527 TCCTGTTTTTAGGGTAATGGGACAATTCCTTGG-CTACCCCAA---TTTGATTGAACGCA 6582
||||| || | || ||||| || || | || || || || || | |||||||
Sbjct 343 CCCTGTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCA 284
Query 6583 CCCATGAATTCTTTGAAAAAAGTCTGATTTACTATAATGGACGTCCAGACCTG-----AT 6637
| || ||||| || || ||||| || |||| |||||| | ||||||| ||
Sbjct 283 C----GAGTTCTTCGAGAACAGTCTCAT---CTATTATGGAC--CTAGACCTGATTTAAT 233
Query 6638 GCGAGTAAACGGAAACACCTTAGAAAACAG-AACACCTCTCAAC--GTTTGTTGGCAAGG 6694
| |||| | || ||||||| | ||| || | | | | || |||||| ||||
Sbjct 232 GGAAGTACAAGGGGACACCTT---GATCAGTAAAGCAAGTTATCCTGTCTGTTGGGAAGG 176
Query 6695 TCAAGCTGGAGGCTTAGAGGGGCTTAGACAAAAAGGATGGAGCATCCTGAATCTTCTTGT 6754
|| || || | ||||| | ||||||||||| ||||| || ||||| | || ||
Sbjct 175 CCAGAAAGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGT 116
Query 6755 GATTCAAAGAGAAGCAAAGATTCGAAATACAGCGGTCAAGGTGCTAGCTCAGGGAGACAA 6814
| | ||||||| |||| |||||||| |||||| ||||| ||||| |||||
Sbjct 115 GCTCTTGCGAGAAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAA 56
Query 6815 TCAGGTCATTTG 6826
||||| || ||
Sbjct 55 CCAGGTGATATG 44
>seq90283
Length=1560
Score = 127 bits (140), Expect = 1e-25
Identities = 398/607 (66%), Gaps = 16/607 (3%)
Strand=Plus/Plus
Query 6231 GAAGATTTGGTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAttt 6290
||||| ||||||| ||||| || ||||| ||||| ||| | || || || ||||||
Sbjct 227 GAAGACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTT 286
Query 6291 ttttCTCTTATGTCCTGGAAGTTGAGAGAA--TATTTCGTCATTACGGAGTATTTAATAA 6348
|| || || |||| ||||| || ||||| || ||||| || ||||| | || |
Sbjct 287 TTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCA 346
Query 6349 AGACACATTTTGTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCA 6408
|| | | ||| || | || ||||| |||||||| || ||| | || || |
Sbjct 347 AGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGA 406
Query 6409 TAAAGAAAATGATGGATACCTC-ATCAGGACAGGGTTTGGATAATTACGACTCAATTTGC 6467
|| || | |||||| || |||| || || | ||| | ||| |||| ||||
Sbjct 407 CCAAAAAGTTACTGGATAATTCCATCAAT-CAAGGATCAGATGACTACAACTCCATTTCT 465
Query 6468 ATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGT 6527
| || || || || || ||||| || |||||||| |||||| || || | | || | |
Sbjct 466 CTTGCAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGAT 525
Query 6528 CCTGTTTTTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCAT 6587
|| | ||| || || |||||||||||| | || | | | ||| ||| | || ||
Sbjct 526 CCAGCTTTAAGAGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAACACAC 585
Query 6588 GAATTCTTTGAAAAAAGTCTGATTTACTATAATGGA---CGTCCAGACCTGATGCGAGTA 6644
|| ||||||| | || || | |||| | ||| ||||| ||| | ||| ||||
Sbjct 586 GAGTTCTTTGGAGGCAGCCTTGTCTACT---ACGGACCCCGTCCTGACTTAATGGAAGTA 642
Query 6645 AACGGAAA--CACCTTAGAAAACAGAACACCTCTCAACGTTTGTTGGCAAGGTCAAGCT- 6701
| ||| | ||| ||| | || || || | || || ||| ||| ||||
Sbjct 643 GATGGAGAGTCACTACGGAACAAAGGGAACTTCCC--TGTCTGCTGG-AAGAGACAGCTC 699
Query 6702 GGAGGCTTAGAGGGGCTTAGACAAAAAGGATGGAGCATCCTGAATCTTCTTGTGATTCAA 6761
|||||||| || || || |||||||||| |||||||| | ||||| | || | |
Sbjct 700 GGAGGCTTGGAAGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCTATTGGTCCTCCCG 759
Query 6762 AGAGAAGCAAAGATTCGAAATACAGCGGTCAAGGTGCTAGCTCAGGGAGACAATCAGGTC 6821
||||| |||| | |||| || ||| || || | |||||||||| || ||
Sbjct 760 CACGAAGCCAAGAGTAGAAACACCATGGTTAAAACCCTCGTGAAGGGAGACAACCAAGTA 819
Query 6822 ATTTGCA 6828
|| ||||
Sbjct 820 ATATGCA 826
>seq283927
Length=152763
Score = 118 bits (130), Expect = 7e-23
Identities = 284/428 (66%), Gaps = 4/428 (1%)
Strand=Plus/Minus
Query 6241 TCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAtttttttCTCTTA 6300
|||| || | ||||| || ||| | ||| | || || || ||||| || || || |
Sbjct 1658 TCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTCCCTAA 1599
Query 6301 TGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAATAAAGACACATTTTG 6360
|||||||||| | | |||||||||||||||| || | || ||||| | |
Sbjct 1598 TGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAATTCTACA 1540
Query 6361 TCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCATAAAGAAAATGA 6420
| ||| | ||| ||| | || |||||||| || | | | ||| ||| || ||
Sbjct 1539 TACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAAGTTGT 1480
Query 6421 TGGATACCTCATCAGGACAGGGTTTGGATAATTACGACTCAATTTGCATAGCCAATCACA 6480
| || | ||| | ||||| || ||| ||||| | | ||| ||| ||||| || |
Sbjct 1479 TAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCCAACCATA 1420
Query 6481 TTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTGTTTTTAGGG 6540
| ||||| || || ||||| |||||||| | ||| | || || || || || |
Sbjct 1419 TCGATTACGAAAAATGGAATAATCACCAAAG---AGATGCTAACAACCCGGTGTTCAGCG 1363
Query 6541 TAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCATGAATTCTTTGAAA 6600
| ||||| |||||| | || || || ||| | |||||||| ||||||||||||
Sbjct 1362 TGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTCTTTGAAA 1303
Query 6601 AAAGTCTGATTTACTATAATGGACGTCCAGACCTGATGCGAGTAAACGGAAACACCTTAG 6660
| ||| | ||||| || |||||| ||||||||| | || ||| |||| |||
Sbjct 1302 ACAGTTTAATTTATTACGGACCACGTCCGGACCTGATGGAGGCCAAGGGAGACACGCTAG 1243
Query 6661 AAAACAGA 6668
| ||| ||
Sbjct 1242 AGAACCGA 1235
>seq225232
Length=278362
Score = 100 bits (110), Expect = 2e-17
Identities = 391/607 (64%), Gaps = 16/607 (3%)
Strand=Plus/Plus
Query 6231 GAAGATTTGGTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAttt 6290
|| ||||| ||| || || || || |||||| |||| | || || || ||||||
Sbjct 38712 GATGATTTAATCACTGGCCTAAAGGGCAAAGAAAGAGAGATCAAGAGGGAGGGGAGATTT 38771
Query 6291 ttttCTCTTATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTA--TTTAATAA 6348
| ||| ||||| |||||| || | ||| |||||||| || || | | | || |
Sbjct 38772 CTCCTTCTCATGTCATGGAAGATGCAACAATTATTCGTCATGACTGAACACGTCTTATCA 38831
Query 6349 AGACACATTTTGTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCA 6408
|| | | ||| || ||||| ||| | | ||||||||| || || || || |
Sbjct 38832 AGGAATTTCATGTTCCATTGTTTTCGGGCCTTAAAATGGCAGACGACCTCACTAGAGTGA 38891
Query 6409 TAAAGAAAATGATGGATACCTCA-TCAGGACAGGGTT---TGGATAATTACGACTCAATT 6464
|| || || | || | |||| ||| || ||| | |||||| || || ||
Sbjct 38892 CTAAAAAGATTCTTGACAACTCAATCAAC-CAAGGTCAAGTTGATAAT--CGTTGCATTT 38948
Query 6465 TGCATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAAT 6524
| ||||||| || | || || ||||| || |||||||||||| | ||| | ||
Sbjct 38949 CTC-TAGCCAACCATGTGGACTACGAGAAATGAAACAATCACCAGAGAGCCGAAGCAAAC 39007
Query 6525 GGTCCTGTTTTTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACC 6584
| |||||| |||| | |||| | ||||| | || ||| ||| ||| | | |
Sbjct 39008 GATCCTGTCTTTACCATCATGGTAAAATTCTTAGGTCTCCCAAATGCCTTTGCAAGAATT 39067
Query 6585 CATGAATTCTTTGAAAAAAGTCTGATTTACTATAATGGAC---GTCCAGACCTGATGCGA 6641
||||| || || || | || || | |||| |||||| | || || |||||| |
Sbjct 39068 CATGAGTTTTTCCAACACAGCCTTGTGTACT---ATGGACCAAGGCCTGATCTGATGGAA 39124
Query 6642 GTAAACGGAAACACCTTAGAAAACAGAACACCTCTCAACGTTTGTTGGCAAGGTCAAGCT 6701
|| ||| | || | |||||| | || || ||| |||||| | || ||
Sbjct 39125 GTGGTTGGAGATTCCCTGCAAAACAAGGGATCTTTCCCCGTGTGTTGGGAGGGCCAGTTA 39184
Query 6702 GGAGGCTTAGAGGGGCTTAGACAAAAAGGATGGAGCATCCTGAATCTTCTTGTGATTCAA 6761
|| || | || ||| | || |||| ||||||||||||| | || ||| | || | | |
Sbjct 39185 GGGGGACTGGAAGGGTTAAGGCAAAGAGGATGGAGCATCGTCAACCTTTTGGTTTTACTA 39244
Query 6762 AGAGAAGCAAAGATTCGAAATACAGCGGTCAAGGTGCTAGCTCAGGGAGACAATCAGGTC 6821
||||| || || | ||| || || ||| ||| | || || ||||| ||||| ||
Sbjct 39245 AGAGAGGCCAAAACTCGCAACACCCTGGTAAAGACCTTGGCCCAAGGAGATAATCAAGTT 39304
Query 6822 ATTTGCA 6828
|| ||||
Sbjct 39305 ATCTGCA 39311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35162028909792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |