Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025353.1 Length=11070 Score E Sequences producing significant alignments: (Bits) Value seq176488 131 1e-26 seq90283 127 1e-25 seq283927 118 7e-23 seq225232 100 2e-17 >seq176488 Length=2532 Score = 131 bits (144), Expect = 1e-26 Identities = 404/612 (66%), Gaps = 30/612 (5%) Strand=Plus/Minus Query 6230 GGAAGATTTGGTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAA-ATTGGCCGGCAGAt 6288 |||||| ||| |||| || |||||||||| || ||||| |||| | | |||| || Sbjct 640 GGAAGACTTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCA-AT 582 Query 6289 ttttttCTCTTATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAATAA 6348 | || || || ||||| |||||||| || |||| || ||| || || || | |||| Sbjct 581 TCTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAA 522 Query 6349 AGACACATTTT--GTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGT 6406 | | | ||| | || || |||| || ||| | || ||||||||||| || ||| || Sbjct 521 A-AGA-ATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGT 464 Query 6407 CATAAAGAAAATGATGGATACCTCATCAGGACAGGGTTTGGATAATTACGACTCAATTTG 6466 | ||||||| | | || | || | | || || | ||||| ||| ||||| Sbjct 463 TACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTG 404 Query 6467 CATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGG 6526 | ||||| || ||||||| |||| ||||| || || || || |||| Sbjct 403 TGTGGCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAA 344 Query 6527 TCCTGTTTTTAGGGTAATGGGACAATTCCTTGG-CTACCCCAA---TTTGATTGAACGCA 6582 ||||| || | || ||||| || || | || || || || || | ||||||| Sbjct 343 CCCTGTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCA 284 Query 6583 CCCATGAATTCTTTGAAAAAAGTCTGATTTACTATAATGGACGTCCAGACCTG-----AT 6637 | || ||||| || || ||||| || |||| |||||| | ||||||| || Sbjct 283 C----GAGTTCTTCGAGAACAGTCTCAT---CTATTATGGAC--CTAGACCTGATTTAAT 233 Query 6638 GCGAGTAAACGGAAACACCTTAGAAAACAG-AACACCTCTCAAC--GTTTGTTGGCAAGG 6694 | |||| | || ||||||| | ||| || | | | | || |||||| |||| Sbjct 232 GGAAGTACAAGGGGACACCTT---GATCAGTAAAGCAAGTTATCCTGTCTGTTGGGAAGG 176 Query 6695 TCAAGCTGGAGGCTTAGAGGGGCTTAGACAAAAAGGATGGAGCATCCTGAATCTTCTTGT 6754 || || || | ||||| | ||||||||||| ||||| || ||||| | || || Sbjct 175 CCAGAAAGGGGGTCTCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGT 116 Query 6755 GATTCAAAGAGAAGCAAAGATTCGAAATACAGCGGTCAAGGTGCTAGCTCAGGGAGACAA 6814 | | ||||||| |||| |||||||| |||||| ||||| ||||| ||||| Sbjct 115 GCTCTTGCGAGAAGCTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAA 56 Query 6815 TCAGGTCATTTG 6826 ||||| || || Sbjct 55 CCAGGTGATATG 44 >seq90283 Length=1560 Score = 127 bits (140), Expect = 1e-25 Identities = 398/607 (66%), Gaps = 16/607 (3%) Strand=Plus/Plus Query 6231 GAAGATTTGGTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAttt 6290 ||||| ||||||| ||||| || ||||| ||||| ||| | || || || |||||| Sbjct 227 GAAGACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTT 286 Query 6291 ttttCTCTTATGTCCTGGAAGTTGAGAGAA--TATTTCGTCATTACGGAGTATTTAATAA 6348 || || || |||| ||||| || ||||| || ||||| || ||||| | || | Sbjct 287 TTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCA 346 Query 6349 AGACACATTTTGTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCA 6408 || | | ||| || | || ||||| |||||||| || ||| | || || | Sbjct 347 AGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGA 406 Query 6409 TAAAGAAAATGATGGATACCTC-ATCAGGACAGGGTTTGGATAATTACGACTCAATTTGC 6467 || || | |||||| || |||| || || | ||| | ||| |||| |||| Sbjct 407 CCAAAAAGTTACTGGATAATTCCATCAAT-CAAGGATCAGATGACTACAACTCCATTTCT 465 Query 6468 ATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGT 6527 | || || || || || ||||| || |||||||| |||||| || || | | || | | Sbjct 466 CTTGCAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGAT 525 Query 6528 CCTGTTTTTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCAT 6587 || | ||| || || |||||||||||| | || | | | ||| ||| | || || Sbjct 526 CCAGCTTTAAGAGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAACACAC 585 Query 6588 GAATTCTTTGAAAAAAGTCTGATTTACTATAATGGA---CGTCCAGACCTGATGCGAGTA 6644 || ||||||| | || || | |||| | ||| ||||| ||| | ||| |||| Sbjct 586 GAGTTCTTTGGAGGCAGCCTTGTCTACT---ACGGACCCCGTCCTGACTTAATGGAAGTA 642 Query 6645 AACGGAAA--CACCTTAGAAAACAGAACACCTCTCAACGTTTGTTGGCAAGGTCAAGCT- 6701 | ||| | ||| ||| | || || || | || || ||| ||| |||| Sbjct 643 GATGGAGAGTCACTACGGAACAAAGGGAACTTCCC--TGTCTGCTGG-AAGAGACAGCTC 699 Query 6702 GGAGGCTTAGAGGGGCTTAGACAAAAAGGATGGAGCATCCTGAATCTTCTTGTGATTCAA 6761 |||||||| || || || |||||||||| |||||||| | ||||| | || | | Sbjct 700 GGAGGCTTGGAAGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCTATTGGTCCTCCCG 759 Query 6762 AGAGAAGCAAAGATTCGAAATACAGCGGTCAAGGTGCTAGCTCAGGGAGACAATCAGGTC 6821 ||||| |||| | |||| || ||| || || | |||||||||| || || Sbjct 760 CACGAAGCCAAGAGTAGAAACACCATGGTTAAAACCCTCGTGAAGGGAGACAACCAAGTA 819 Query 6822 ATTTGCA 6828 || |||| Sbjct 820 ATATGCA 826 >seq283927 Length=152763 Score = 118 bits (130), Expect = 7e-23 Identities = 284/428 (66%), Gaps = 4/428 (1%) Strand=Plus/Minus Query 6241 TCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAtttttttCTCTTA 6300 |||| || | ||||| || ||| | ||| | || || || ||||| || || || | Sbjct 1658 TCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTCCCTAA 1599 Query 6301 TGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAATAAAGACACATTTTG 6360 |||||||||| | | |||||||||||||||| || | || ||||| | | Sbjct 1598 TGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAATTCTACA 1540 Query 6361 TCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCATAAAGAAAATGA 6420 | ||| | ||| ||| | || |||||||| || | | | ||| ||| || || Sbjct 1539 TACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAAGTTGT 1480 Query 6421 TGGATACCTCATCAGGACAGGGTTTGGATAATTACGACTCAATTTGCATAGCCAATCACA 6480 | || | ||| | ||||| || ||| ||||| | | ||| ||| ||||| || | Sbjct 1479 TAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCCAACCATA 1420 Query 6481 TTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTGTTTTTAGGG 6540 | ||||| || || ||||| |||||||| | ||| | || || || || || | Sbjct 1419 TCGATTACGAAAAATGGAATAATCACCAAAG---AGATGCTAACAACCCGGTGTTCAGCG 1363 Query 6541 TAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCATGAATTCTTTGAAA 6600 | ||||| |||||| | || || || ||| | |||||||| |||||||||||| Sbjct 1362 TGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTCTTTGAAA 1303 Query 6601 AAAGTCTGATTTACTATAATGGACGTCCAGACCTGATGCGAGTAAACGGAAACACCTTAG 6660 | ||| | ||||| || |||||| ||||||||| | || ||| |||| ||| Sbjct 1302 ACAGTTTAATTTATTACGGACCACGTCCGGACCTGATGGAGGCCAAGGGAGACACGCTAG 1243 Query 6661 AAAACAGA 6668 | ||| || Sbjct 1242 AGAACCGA 1235 >seq225232 Length=278362 Score = 100 bits (110), Expect = 2e-17 Identities = 391/607 (64%), Gaps = 16/607 (3%) Strand=Plus/Plus Query 6231 GAAGATTTGGTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAttt 6290 || ||||| ||| || || || || |||||| |||| | || || || |||||| Sbjct 38712 GATGATTTAATCACTGGCCTAAAGGGCAAAGAAAGAGAGATCAAGAGGGAGGGGAGATTT 38771 Query 6291 ttttCTCTTATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTA--TTTAATAA 6348 | ||| ||||| |||||| || | ||| |||||||| || || | | | || | Sbjct 38772 CTCCTTCTCATGTCATGGAAGATGCAACAATTATTCGTCATGACTGAACACGTCTTATCA 38831 Query 6349 AGACACATTTTGTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCA 6408 || | | ||| || ||||| ||| | | ||||||||| || || || || | Sbjct 38832 AGGAATTTCATGTTCCATTGTTTTCGGGCCTTAAAATGGCAGACGACCTCACTAGAGTGA 38891 Query 6409 TAAAGAAAATGATGGATACCTCA-TCAGGACAGGGTT---TGGATAATTACGACTCAATT 6464 || || || | || | |||| ||| || ||| | |||||| || || || Sbjct 38892 CTAAAAAGATTCTTGACAACTCAATCAAC-CAAGGTCAAGTTGATAAT--CGTTGCATTT 38948 Query 6465 TGCATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAAT 6524 | ||||||| || | || || ||||| || |||||||||||| | ||| | || Sbjct 38949 CTC-TAGCCAACCATGTGGACTACGAGAAATGAAACAATCACCAGAGAGCCGAAGCAAAC 39007 Query 6525 GGTCCTGTTTTTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACC 6584 | |||||| |||| | |||| | ||||| | || ||| ||| ||| | | | Sbjct 39008 GATCCTGTCTTTACCATCATGGTAAAATTCTTAGGTCTCCCAAATGCCTTTGCAAGAATT 39067 Query 6585 CATGAATTCTTTGAAAAAAGTCTGATTTACTATAATGGAC---GTCCAGACCTGATGCGA 6641 ||||| || || || | || || | |||| |||||| | || || |||||| | Sbjct 39068 CATGAGTTTTTCCAACACAGCCTTGTGTACT---ATGGACCAAGGCCTGATCTGATGGAA 39124 Query 6642 GTAAACGGAAACACCTTAGAAAACAGAACACCTCTCAACGTTTGTTGGCAAGGTCAAGCT 6701 || ||| | || | |||||| | || || ||| |||||| | || || Sbjct 39125 GTGGTTGGAGATTCCCTGCAAAACAAGGGATCTTTCCCCGTGTGTTGGGAGGGCCAGTTA 39184 Query 6702 GGAGGCTTAGAGGGGCTTAGACAAAAAGGATGGAGCATCCTGAATCTTCTTGTGATTCAA 6761 || || | || ||| | || |||| ||||||||||||| | || ||| | || | | | Sbjct 39185 GGGGGACTGGAAGGGTTAAGGCAAAGAGGATGGAGCATCGTCAACCTTTTGGTTTTACTA 39244 Query 6762 AGAGAAGCAAAGATTCGAAATACAGCGGTCAAGGTGCTAGCTCAGGGAGACAATCAGGTC 6821 ||||| || || | ||| || || ||| ||| | || || ||||| ||||| || Sbjct 39245 AGAGAGGCCAAAACTCGCAACACCCTGGTAAAGACCTTGGCCCAAGGAGATAATCAAGTT 39304 Query 6822 ATTTGCA 6828 || |||| Sbjct 39305 ATCTGCA 39311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35162028909792