Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025356.1 Length=11097 Score E Sequences producing significant alignments: (Bits) Value seq283927 145 5e-31 seq176488 129 4e-26 seq49187 125 5e-25 seq292816 104 2e-18 seq90283 104 2e-18 seq225232 96.9 2e-16 seq133769 89.7 4e-14 >seq283927 Length=152763 Score = 145 bits (160), Expect = 5e-31 Identities = 230/326 (71%), Gaps = 8/326 (2%) Strand=Plus/Minus Query 6297 TCTCATAATAGGACTAAAAGGGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTC 6356 |||||| || ||| ||||||| || ||| | ||| | || | | ||||||||||| || Sbjct 1663 TCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTC 1604 Query 6357 CCTGATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTACTTAATAAAG--ACT 6414 ||| ||||||||| | || | ||||||| ||||| || || || || ||||| | | Sbjct 1603 CCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAATT 1545 Query 6415 CATTATGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACATCAGTTGTAAAG 6474 | || |||| |||| ||||||||| ||||| || || ||| ||| | ||| Sbjct 1544 C--TACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAA 1487 Query 6475 AAGATGTTGGACAACACGAATGGACAAGGACTGGATGATTATTCATCGATTTGCATCGCC 6534 ||| |||| ||||| | |||||||| | ||| ||||| || |||| ||| ||| Sbjct 1486 AAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCC 1427 Query 6535 AATCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAATCCAATGGGCCTGTG 6594 || || ||||| || || || ||||||||||| || || ||| | || || ||| Sbjct 1426 AACCATATCGATTACGAAAAATGGAATAATCACCA---AAGAGATGCTAACAACCCGGTG 1370 Query 6595 TTTCGAGTCATGGGGCAGTTTTTGGG 6620 || | || |||||||| || ||||| Sbjct 1369 TTCAGCGTGATGGGGCAATTCTTGGG 1344 >seq176488 Length=2532 Score = 129 bits (142), Expect = 4e-26 Identities = 382/583 (66%), Gaps = 12/583 (2%) Strand=Plus/Minus Query 6313 AAAGGGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTCCCTGATGTCCTGGCAA 6372 |||||||| || |||||| | || | | | |||||| ||||| ||||| ||| | Sbjct 618 AAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTCATGTCTTGGAAG 559 Query 6373 CTGAGAGAATATTTTGTCATCACCGAGTA-CTTAATAAAGACTCATTATGTACCATTATT 6431 | || |||| |||||| || || | |||| ||||| | | | || ||| | || Sbjct 558 TTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAATTGT-ACGTGCCACTGTT 500 Query 6432 CAAAGGACTCACAATGGCGGATGATCTGACATCAGTTGTAAAGAAGATGTTGGACAACAC 6491 ||| |||||||| ||||| ||||| || ||| ||| |||||| | | |||| | Sbjct 499 CAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAACTTCTCGACAGTTC 440 Query 6492 GAATGGACAAGGACTGGATGATTATTCATCGATTTGCATCGCCAATCACATCGACTATGA 6551 ||||||| |||||| || || ||||| | ||||| || | || || | Sbjct 439 TTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAACCATGTTGATTACCA 380 Query 6552 GAAGTGGAATAATCATCAGAGAAAAGAATCCAATGGGCCTGTGTTTCGAGTCATGGGGCA 6611 ||| |||||||| ||||| | |||| ||||| || ||||| ||||| || Sbjct 379 GAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTCCGAGTGATGGGTCA 320 Query 6612 GTTTTTGGGTTATCCCAGATTGTTT-GAAAGAACCCATGAGTTTTTTGAATCAAGCCTCA 6670 |||| ||||| | ||||| ||| | ||||| || ||||| || || || |||| Sbjct 319 GTTTGTGGGTC-TGCCAGAACTTTTCGTCAGAACGCACGAGTTCTTCGAGAACAGTCTCA 261 Query 6671 TTTACTACAACGGCAGACCAGACTTGATGGATGTAAGAGGAGATTCGTTGATCAATACCA 6730 | || || ||||| || || ||||| ||| ||| || | ||||||| || Sbjct 260 TCTATTATGGACCTAGACCTGATTTAATGGAAGTACAAGGGGACACCTTGATCAGTAAAG 201 Query 6731 CTGAAAAGTTG----GTGTGTTGGGAGGGTCAGGCGGGAGGATTGGAAGGATTGAGACAA 6786 | ||||| || |||||||| || ||| || || | || || ||||||||| Sbjct 200 C----AAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTGAGACAA 145 Query 6787 AAAGGATGGAGTGTGCTGAATCTGTTAGTCATAAACAGGGAATCATCCATAAGAAATACA 6846 ||||| |||||| | ||||| || | || | | ||| | | ||||||| Sbjct 144 AAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCGAAATACC 85 Query 6847 ATCGTGAAAGTACTAGCGCAGGGAGACAATCAGGTCATCTGTA 6889 | || || ||||| ||||| ||||| ||||| || |||| Sbjct 84 CTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATGTA 42 >seq49187 Length=20191 Score = 125 bits (138), Expect = 5e-25 Identities = 248/362 (69%), Gaps = 4/362 (1%) Strand=Plus/Plus Query 6298 CTCATAATAGGACTAAAAGGGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTCC 6357 || ||||| || || |||| || ||||||||| | || | | | ||||||||| || Sbjct 6352 CTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCTTCTCG 6411 Query 6358 CTGATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTACTTAATAAAGACTCAT 6417 || ||||| ||| | ||||| |||| | |||| || ||| ||||||||||| Sbjct 6412 CTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGGAGTTC 6471 Query 6418 TATGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACATCAGTTG-TAAAGAA 6476 ||||| || | ||| ||| | || ||||| ||||||||||| | || || |||||| Sbjct 6472 TATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGAC-TAAGGTGACAAAGAA 6530 Query 6477 GATGTTGGACAACACGAATGGACAAGGACTGGATGATTATTCATCGATTTGCATCGCCAA 6536 | | || | ||| ||||| | | || | ||| || |||| | || || Sbjct 6531 ACTCCTAGATAGTTCGATCAACCAAGGGCAGAATTACTATAACTCCATTTCTCTGGCAAA 6590 Query 6537 TCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAATCCAATGGGCCTGTGTT 6596 |||| | || ||||| || |||||||| |||||| | || | ||| | |||||||| Sbjct 6591 TCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTGTGTT 6650 Query 6597 TCGAGTCATGGGGCAGTTTTTGGGTTATCCCAGA-TTGTTTGAAAGAACCCATGAGTTTT 6655 ||||| ||||| ||||| | |||| | || || |||| | | || |||||||| | Sbjct 6651 CCGAGTAATGGGTCAGTTCCTAGGTT-TGCCTGAGCTGTTCGTTCGCACTCATGAGTTCT 6709 Query 6656 TT 6657 || Sbjct 6710 TT 6711 >seq292816 Length=4775 Score = 104 bits (114), Expect = 2e-18 Identities = 243/362 (67%), Gaps = 11/362 (3%) Strand=Plus/Minus Query 6302 TAATAGGACTAAAAGGGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTCC-CTG 6360 |||| ||||| || || ||||| |||||| |||||| | || ||||| |||| | || Sbjct 1755 TAATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAAAAGGAAGGCAGATTTTTTTTCACTC 1696 Query 6361 ATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTACTTAATAAAGACTCATTAT 6420 ||||| ||| | || | | | ||| || | || ||| || | |||||| ||||| Sbjct 1695 ATGTCATGGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATAAAGGAATATTAT 1636 Query 6421 GTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACATCAGTTGTAAA------- 6473 || || | || ||| | || ||||| || ||||| || |||| || | Sbjct 1635 GTTCCTCTTTTTTCTGGATTGACTATGGCAGACGATCTCACCAAAGTTATAGAAAGTTAC 1576 Query 6474 GAAGATGTTGG-ACAACACGAATGGACAAGGACTGGATGATTATTCATCGATTTGCATCG 6532 ||| | |||| | ||| | || ||||| | || || |||||||| || | | Sbjct 1575 GAAAAAGTTGCTAGAACTCTGCCGGTCAAGGCCAGGTCGACTATTCATCAATCACCTTAC 1516 Query 6533 CCAATCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAATCCAATGGGCCTG 6592 |||| || | ||||| | ||||||||||| ||||| | ||| |||| || | Sbjct 1515 CCAACCATGTAGACTACAAAAAGTGGAATAACCATCAACGTGCCGAAGCCAACTATCCCG 1456 Query 6593 TGTTTCGAGTCATGGGGCAGTTTTTGGG-TTATCCCAGATTGTTTGAAAGAACCCATGAG 6651 |||| ||| ||||| || ||| |||| ||||| | | ||||||| ||||| |||||| Sbjct 1455 CTTTTCAAGTAATGGGACAATTTCTGGGACTATCCGA-AGTGTTTGACAGAACTCATGAG 1397 Query 6652 TT 6653 || Sbjct 1396 TT 1395 >seq90283 Length=1560 Score = 104 bits (114), Expect = 2e-18 Identities = 341/523 (65%), Gaps = 18/523 (3%) Strand=Plus/Plus Query 6304 ATAGGACTAAAAGGGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTCCCTGATG 6363 ||||| || || ||||| ||| | ||| | || | | || ||||| || ||||| ||| Sbjct 239 ATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCCTCATG 298 Query 6364 TCCTGGCAACT---GAGAGAATATTTTGTCATCACCGAGTACTTAATAAAGACTCATTAT 6420 | ||| |||| |||| | || || || ||||||||| | || ||| | ||| Sbjct 299 TTATGG-AACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGTAT 357 Query 6421 GTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACATCAGTTGTAAAGAAGATG 6480 || || | ||| ||| | ||||||||||| ||| |||| ||| || ||| | Sbjct 358 GTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAAAGTTA 417 Query 6481 TTGGACAA---CACGAATGGACAAGGACTGGATGATTATTCATCGATTTGCATCGCCAAT 6537 |||| || || ||| |||||| ||||| || || |||| | || || Sbjct 418 CTGGATAATTCCATCAAT---CAAGGATCAGATGACTACAACTCCATTTCTCTTGCAAAC 474 Query 6538 CACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAATCCAATGGGCCTGTGTTT 6597 || || |||||||| || ||||| || || ||||| || | | || | || | || Sbjct 475 CATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAGCTTTA 534 Query 6598 CGAGTCATGGGGCAGTTTTTGGGTTATCCCAGA-TTGTTTGAAAGAACCCATGAGTTTTT 6656 |||||||||| || || | |||| | | ||| ||||||| ||| || ||||| || Sbjct 535 AGAGTCATGGGACAATTCATCGGTT-TACTAGAGTTGTTTGTTCAAACACACGAGTTCTT 593 Query 6657 TGAATCAAGCCTCATTTACTACAACGGCAGACCAGACTTGATGGATGTAAGAGGAGATTC 6716 || | ||||| | |||||| | | || ||||| ||||| ||| ||||| || Sbjct 594 TGGAGGCAGCCTTGTCTACTACGGACCCCGTCCTGACTTAATGGAAGTAGATGGAGAGTC 653 Query 6717 GTTGATCAATACCACTGAAAAGTT---GGTGTGTTGGGAGGGTCAGGCGGGAGGATTGGA 6773 | || || | || || || || ||| || | ||| ||||| ||||| Sbjct 654 ACTACGGAA---CAAAGGGAACTTCCCTGTCTGCTGGAAGAGACAGCTCGGAGGCTTGGA 710 Query 6774 AGGATTGAGACAAAAAGGATGGAGTGTGCTGAATCTGTTAGTC 6816 ||| | |||||||||| ||||| | | ||||| || ||| Sbjct 711 AGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCTATTGGTC 753 >seq225232 Length=278362 Score = 96.9 bits (106), Expect = 2e-16 Identities = 339/518 (65%), Gaps = 16/518 (3%) Strand=Plus/Plus Query 6289 CGTGATAGTCTCATAATAGGACTAAAAGGGAAAGAAAGAGAATTGAAAATCGCCGGAAGA 6348 |||||| | | || | || ||||| || ||||||||||| | || | | || ||| Sbjct 38709 CGTGATGATTTAATCACTGGCCTAAAGGGCAAAGAAAGAGAGATCAAGAGGGAGGGGAGA 38768 Query 6349 TTCTTTTCC--CTGATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTAC---T 6403 || | ||| || ||||| ||| | || | ||| || ||||| || || || | Sbjct 38769 TT--TCTCCTTCTCATGTCATGGAAGATGCAACAATTATTCGTCATGACTGAACACGTCT 38826 Query 6404 TAATAAAGACTCATTATGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACAT 6463 || || || | | |||| ||||| || || || | |||||| || || || || Sbjct 38827 TATCAAGGAATT-TCATGTTCCATTGTTTTCGGGCCTTAAAATGGCAGACGACCTCACTA 38885 Query 6464 CAGTTGTAAAGAAGATGTTGGACAACACGAATGGAC-AAGGACTGGATGATTATTCATCG 6522 ||| || ||||| | |||||| | ||| || |||| | | |||| || | Sbjct 38886 GAGTGACTAAAAAGATTCTTGACAACTC-AATCAACCAAGGTCAAGTTGATAATCGTTGC 38944 Query 6523 ATTTGCATCGCCAATCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAATCC 6582 |||| | ||||| || | ||||| ||||| || || ||||| |||||| ||| | Sbjct 38945 ATTTCTCTAGCCAACCATGTGGACTACGAGAAATGAAACAATCACCAGAGAGCCGAAGCA 39004 Query 6583 AATGGGCCTGTGTTTCGAGTCATGGGGCAGTTTTTGGGTTATCCCAGATTG-TTTGAAAG 6641 || | ||||| ||| |||||| | || || ||| ||||| || |||| ||| Sbjct 39005 AACGATCCTGTCTTTACCATCATGGTAAAATTCTTAGGTC-TCCCAAATGCCTTTGCAAG 39063 Query 6642 AACCCATGAGTTTTTTGAATCAAGCCTCATTTACTACAACGGCAGACCAGACTTGATGGA 6701 || ||||||||||| || ||||| | ||||| || || || ||||||| Sbjct 39064 AATTCATGAGTTTTTCCAACACAGCCTTGTGTACTATGGACCAAGGCCTGATCTGATGGA 39123 Query 6702 TGTAAGAGGAGATTCGTTGATCAATACCACTGAAAAGT--TGGTGTGTTGGGAGGGTCAG 6759 || |||||||| || ||| || | || | |||||||||||||| ||| Sbjct 39124 AGTGGTTGGAGATTCCCTG--CAAAACAAGGGATCTTTCCCCGTGTGTTGGGAGGGCCAG 39181 Query 6760 GCGGGAGGATTGGAAGGATTGAGACAAAAAGGATGGAG 6797 || ||| ||||||| || || |||| ||||||||| Sbjct 39182 TTAGGGGGACTGGAAGGGTTAAGGCAAAGAGGATGGAG 39219 >seq133769 Length=136818 Score = 89.7 bits (98), Expect = 4e-14 Identities = 326/502 (65%), Gaps = 10/502 (2%) Strand=Plus/Minus Query 6301 ATAATAGGACTAAAAGGGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTCCCTG 6360 || || ||||| || || ||||| ||||| |||| | | || |||| || || || Sbjct 122642 ATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTC 122583 Query 6361 ATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTACTTAATAAA-GACTCATTA 6419 ||||| ||| | | || |||| |||||| || || | | ||||| || | | | Sbjct 122582 ATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGT-A 122524 Query 6420 TGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACATCAGTTGTAAAGAAGAT 6479 ||||||| | || | ||||| ||||||||||| || || ||| |||| |||||| | Sbjct 122523 TGTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACT 122464 Query 6480 GTTGGACAACACGAATGGACAAGGACTGGATGATTATTCATCGATTTGCATCGCCAATCA 6539 | |||| | ||||||| || || ||||| ||||| | ||||| || Sbjct 122463 TCTCGACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCA 122404 Query 6540 CATCGACTATGAGAAGTGGAATAATCATCA--GAGAAAAGAAT-CCAATGGGCCTGTGTT 6596 | || || | |||||||| |||||||| | | | | |||| |||| || Sbjct 122403 TGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAAT---ACTGTCTT 122347 Query 6597 TCGAGTCATGGGGCAGTTTTTGGGTTATCCCAG-ATTGTTTGAAAGAACCCATGAGTTTT 6655 |||||||||| |||||| |||| | |||| | | || | ||||| |||||||| | Sbjct 122346 CAGAGTCATGGGTCAGTTTGTGGG-ACTACCAGAACTTTTCGTGAGAACGCATGAGTTCT 122288 Query 6656 TTGAATCAAGCCTCATTTACTACAACGGCAGACCAGACTTGATGGATGTAAGAGGAGATT 6715 | || || || | ||||| |||||| || || ||||| | ||| ||| Sbjct 122287 TCGAGAACAGTCTTGTCTACTATGGACCCAGACCGGATTTAATGGACATGCAAGGGGATA 122228 Query 6716 CGTTGATCAATACCACTGAAAAGTTGGTGTGTTGGGAGGGTCAGGCGGGAGGATTGGAAG 6775 | ||||| | | | || | || || ||||| || || ||||| | |||| Sbjct 122227 CTTTGATTAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAG 122168 Query 6776 GATTGAGACAAAAAGGATGGAG 6797 | | |||||||| || ||||| Sbjct 122167 GCCTAAGACAAAAGGGGTGGAG 122146 Score = 84.2 bits (92), Expect = 2e-12 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 6989 CAGGGACAGGTAAGTTGGGATTGATCATAAATAATGATGAGACCATGCAATCTGCAGATT 7048 |||| ||| |||| |||||||| | || || | ||||||||||||||| | |||| Sbjct 121954 CAGGAACACGTAAACTGGGATTGCTAATCAACAGAGATGAGACCATGCAAAGCACTGATT 121895 Query 7049 ACCTTAATTACGGAAAAATGCCAGTCTTCCGAGGAATCCTAAGAGGATTAGAGACTAAAA 7108 || || || || | ||||| ||| |||||| | | | |||||| | || | Sbjct 121894 TTCTGTCCTATGGCAAGGTACCAGTGTTCAGAGGAAACATCCTACCTTTAGAGGCAAAGA 121835 Query 7109 GATGGTCCAGGGTCACATGCATCACGAATGATCAGATTCCAACATTGGCAGGAGTAATGT 7168 ||||||| | || |||||| | || |||||||| | || | ||| | ||| | | Sbjct 121834 GATGGTCACGAGTTACATGCGTAACCAATGATCAATTACCTTCTTTGTCCAATGTACTTT 121775 Query 7169 CTTCTGTGTCAACAAATGCACTGACAGTAGCTCA 7202 | | | ||||||||||| | ||||||||||| Sbjct 121774 CAACCATTTCAACAAATGCTATCACAGTAGCTCA 121741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35248069763568