Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025358.1 Length=15024 Score E Sequences producing significant alignments: (Bits) Value seq283927 109 5e-20 seq90283 78.8 9e-11 >seq283927 Length=152763 Score = 109 bits (120), Expect = 5e-20 Identities = 254/376 (68%), Gaps = 8/376 (2%) Strand=Plus/Minus Query 10152 ATTGGGTTGAAAGCTAAGGAACGAGAACTTAAAGAAGAAGGTAGATTCTTTTCTTTAATG 10211 ||||| || |||| |||||| | ||| | || | ||||| |||||||| || ||||| Sbjct 1656 ATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTCCCTAATG 1597 Query 10212 TCTTACGAAT-TGAGGGATTATTTTGTATCTACTGAATACCTGATCAAGAAATATTTTGT 10270 || | |||| | | ||||| || ||| ||| |||| | ||| ||| | | Sbjct 1596 TCCTG-GAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAATTCTACAT 1539 Query 10271 ACCCTTATTTGAAGGTCTAACAATGGCTGATGATTTGAATACAGTAATTAAGAAGATGTT 10330 |||| |||||| ||| || || ||||| || || |||| ||| || ||| |||| Sbjct 1538 ACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAAGTTGTT 1479 Query 10331 GGATGTCTCAAGCGGCCAGGGAACCAGA-GAATATGATTATATAACTATTGCAAACAACA 10389 || ||| || || || | || || || | | || || ||||| ||| | | Sbjct 1478 AGACAATTCACCGGGACAAGGG-CAGGACGATTACCAATTGATTACCATTGCCAACCATA 1420 Query 10390 TCGATTATGAAAAATGGAATAATTATCAAAGGATAGAGTCTAACGGTCCAGTATTTACTG 10449 ||||||| ||||||||||||||| | ||||| ||| ||||| || || || | | Sbjct 1419 TCGATTACGAAAAATGGAATAATCACCAAAG---AGATGCTAACAACCCGGTGTTCAGCG 1363 Query 10450 TCATGGGAAAATTTTTGGGGCTACCTAATCTCTTTACAAGAACTCATGAATTCTTCCAAA 10509 | ||||| |||| ||||| || || || | || || | || || ||||||| ||| Sbjct 1362 TGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTCTTTGAAA 1303 Query 10510 AAAGCTTGATTTATTA 10525 | || || |||||||| Sbjct 1302 ACAGTTTAATTTATTA 1287 >seq90283 Length=1560 Score = 78.8 bits (86), Expect = 9e-11 Identities = 211/319 (66%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 10147 TGGTGATTGGGTTGAAAGCTAAGGAACGAGAACTTAAAGAAGAAGGTAGATTCTTTTCTT 10206 |||| || ||| | || | |||||||| ||| | || | || || ||||| || || Sbjct 234 TGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCC 293 Query 10207 TAATGTCTTACGAATTGAGGGAT--TATTTTGTATCTACTGAATACCTGATCAAGAAATA 10264 | |||| | | || || || || || || || || || ||||| |||||| | Sbjct 294 TCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCT 353 Query 10265 TTTTGTACCCTTATTTGAAGGTCTAACAATGGCTGATGATTTGAATACAGTAATTAAGAA 10324 | ||| || | || || |||||||||| || ||||||| | ||| | || || Sbjct 354 GTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAAA 413 Query 10325 GATGTTGGATGTCTCAAGCGGCCAGGGAACCAGA-GAATATGATTATATAACTATTGCAA 10383 | | ||||| || | | || ||| | ||| || || | | || || |||||| Sbjct 414 GTTACTGGATAATTCCATCAATCAAGGATC-AGATGACTACAACTCCATTTCTCTTGCAA 472 Query 10384 ACAACATCGATTATGAAAAATGGAATAATTATCAAAGGATAGAGTCTAACGGTCCAGTAT 10443 || | || || |||||||||||||| || | || ||| || |||||| ||||| | Sbjct 473 ACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAGCTT 532 Query 10444 TTACTGTCATGGGAAAATT 10462 | | ||||||||| |||| Sbjct 533 TAAGAGTCATGGGACAATT 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47753509665652