Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025359.1 Length=11526 Score E Sequences producing significant alignments: (Bits) Value seq283927 141 7e-30 >seq283927 Length=152763 Score = 141 bits (156), Expect = 7e-30 Identities = 366/549 (67%), Gaps = 18/549 (3%) Strand=Plus/Minus Query 6621 AATGAGAACGGTCTGGGCTTGAATGATCTGGTTATAGGACTCAAAGAAAAAGAAAGAGAA 6680 ||||| ||||| ||| | ||||||| | || ||| | |||| ||| ||| | ||| Sbjct 1689 AATGACAACGGATTGGACAGAGATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAA 1630 Query 6681 CTTAAGGAGGAGGGAAGATTCTTTTCTCTTATGGGTTGGAAACTTCGACTTTATTTTGTG 6740 | ||| |||| ||||||||||| || || ||| ||||| |||| || ||||| || Sbjct 1629 ATCAAGAAGGAAGGAAGATTCTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTC 1570 Query 6741 ATAACTGAGTTCTTAATCAAGAAATTCTACGTGCCGATGTTCAAAGGACTGACTATGGCG 6800 || || || | || | ||| |||||||| | || | || |||||| || ||||| Sbjct 1569 ATTACAGA-AACCTACTAAAGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCA 1511 Query 6801 GATGACCTGAACACGGTAACTAAAAAACTCCTTAAAGCAA--CAGAAGGGCAAGGAAGAG 6858 || ||| ||| || | |||||| | ||| | ||| || || ||||| | Sbjct 1510 GACGACTTGATGGAAGTCGC-AAAAAAGTTGTTAGA-CAATTCACCGGGACAAGGGCAGG 1453 Query 6859 ACGATTATGACGAAATTTACATCGCCAACTCGTTGGATTACGACAAATGGAACAACAACC 6918 ||||||| | ||| ||| |||||| | |||||||| |||||||| || ||| Sbjct 1452 ACGATTACCAATTGATTACCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACC 1393 Query 6919 AACGCTATGAGTCTAATGAACATGTATTCAGAGTTATGGGGAAATTTATGGGATTACCGG 6978 || | ||| |||| | | || ||||| || |||||| |||| ||||| | || Sbjct 1392 AAAGAGATG---CTAACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAA 1336 Query 6979 AGATATTCGCCATGACCCACAAGTTTTTTCAACAGTCTCTAGTGTATTACTGTAGTCGTC 7038 | | || | |||||||| || ||| || | | || | |||||| | |||| Sbjct 1335 ACTTGTTAACTCGCACCCACAAATTCTTTGAAAACAGTTTAATTTATTACGGACCACGTC 1276 Query 7039 CGGATCTAATGAAGGTAGAGGGAAACACTTTAGTGAACGTGAATCCTGAAACT--CCGGT 7096 |||| || ||| ||| ||||| |||| ||| |||| || || ||| || || Sbjct 1275 CGGACCTGATGGAGGCCAAGGGAGACACGCTAGAGAAC-CGAGGCC----ACTTCCCTGT 1221 Query 7097 TTGCTGGAATGGACAACAGGGAGGGTTCGAAGGATTAAGACAGAAAGGCTGGAGTGTGGT 7156 |||||||||||| || ||| || | || || | | ||||| || ||| ||||||| Sbjct 1220 TTGCTGGAATGGCCAGTTGGGTGGACTGGAGGGTCTCCGTCAGAAGGGGTGGGGTGTGGT 1161 Query 7157 CAATTATCT 7165 |||||| Sbjct 1160 ---TTATCT 1155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36615163329120