Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025364.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq283927 158 8e-35 seq176488 118 7e-23 seq219500 109 4e-20 seq49187 93.3 3e-15 >seq283927 Length=152763 Score = 158 bits (174), Expect = 8e-35 Identities = 350/514 (68%), Gaps = 16/514 (3%) Strand=Plus/Minus Query 6164 AGATGATTTAGTCATCGGCTTAAAAGGCAAGGAAAGAGAATTAAAAATAGCAGGTAGATT 6223 ||||||| | |||| || |||||||| |||||| | ||| | || | | ||| ||||| Sbjct 1669 AGATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATT 1610 Query 6224 TTTCTCTCTCATGTCTTGGAAATTGAGGGAATACTTTGTGATCACAGAGTACTTAATTAA 6283 ||||| || ||||| ||||| | |||| || || || ||||| || || | || Sbjct 1609 CTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAA 1551 Query 6284 GACACATTTTGTGCCTCTATTTCATGGTCTCACCATGGCTGACGACATGACTGCAGTCAT 6343 | | | | || |||||| || ||||||||||| |||||| ||| | |||| Sbjct 1550 GGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGC 1491 Query 6344 CAAAAAGATGTTGGAAAGCTCATCTGGACAAGGTTTGTTAGATTACTCAGCGGTATGCCT 6403 |||||| |||| || | ||| | |||||||| | |||||| | | | | | Sbjct 1490 AAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCAT 1431 Query 6404 GGCCAACCATATAGATTATGAAAAATGGAACAATCACCAGCGAAAATTGTCAAACGGTCC 6463 ||||||||||| ||||| ||||||||||| |||||||| || | || | ||| || Sbjct 1430 TGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGAGA--TG-CTAACAACCC 1374 Query 6464 TGTCTTCAAGGTCATGGGCCAATTCCTTGGGTTTCCGAATCTAATATAC-AGAACTCATG 6522 || |||| || ||||| ||||| |||||| | | || || | || | || || Sbjct 1373 GGTGTTCAGCGTGATGGGGCAATT-CTTGGGACTGCCAAACTTGTTAACTCGCACCCACA 1315 Query 6523 AATTTTTTGAGAAAAGCCTAATATATTACAATGG--CA-GGCCTGATCTCATGAGAGTCA 6579 |||| ||||| || || |||| |||||| || || | || || || ||| | || Sbjct 1314 AATTCTTTGAAAACAGTTTAATTTATTAC---GGACCACGTCCGGACCTGATGGAGGCCA 1258 Query 6580 AAGATGACACTGTTGAAAATGCAGGCACCACT--CAGGTGTGCTGGAATGGGCAGGCAGG 6637 | | ||||| | || || ||| ||||| | || ||||||||||| ||| || Sbjct 1257 AGGGAGACACGCTAGAGAACCGAGG--CCACTTCCCTGTTTGCTGGAATGGCCAGTTGGG 1200 Query 6638 AGGCTTGGAAGGTCTTCGTCAAAAGGGTTGGAGT 6671 || |||| ||||| ||||| ||||| ||| || Sbjct 1199 TGGACTGGAGGGTCTCCGTCAGAAGGGGTGGGGT 1166 >seq176488 Length=2532 Score = 118 bits (130), Expect = 7e-23 Identities = 393/602 (65%), Gaps = 16/602 (3%) Strand=Plus/Minus Query 6125 AGAATTTCTAGAGGAGATAGATAAAAACGGACTACCTCTAGATGATTTAGTCATCGGCTT 6184 ||| ||||| || ||||| || | || || || || || || || |||| ||||| Sbjct 679 AGAGTTTCTCGAAGAGATCAATGACAAGGGCCTCCCCAAGGAAGACTTGATCATTGGCTT 620 Query 6185 AAAAGGCAAGGAAAGAGAATTAAAAATAGC-AGGTAGATTTTTCTCTCTCATGTCTTGGA 6243 ||||| ||||| |||||| |||| | || ||| | ||| ||||| ||||||||||||| Sbjct 619 GAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCA-ATTCTTCTCCCTCATGTCTTGGA 561 Query 6244 AATTGAGGGAATACTTTGTGATCACAGAGTA-CTTAATTAAGACACATTTT--GTGCCTC 6300 | || ||| |||||||||| ||||| | |||| |||| ||| | ||||| | Sbjct 560 AGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGA---ATTGTACGTGCCAC 504 Query 6301 TATTTCATGGTCTCACCATGGCTGACGACATGACTGCAGTCATCAAAAAGATGTTGGAAA 6360 | || | || ||||| ||||| || ||| | || || | || || | | || | Sbjct 503 TGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAACTTCTCGACA 444 Query 6361 GCTCATCTGGACAAGGTTTGTTAGATTACTCAGCGGTATGCCTGGCCAACCATATAGATT 6420 | || | ||||| |||||||| | | || ||||||||||| | |||| Sbjct 443 GTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAACCATGTTGATT 384 Query 6421 ATGAAAAATGGAACAATCACCAGCGAAAATTGTCAAACGGTCCTGTCTTCAAGGTCATGG 6480 | | |||||||| || || || || ||| | ||| ||||||||| || |||| Sbjct 383 ACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTCCGAGTGATGG 324 Query 6481 GCCAATTCCTTGGGTTTCCGAATCTAATATACAGAACTCATGAATTTTTTGAGAAAAGCC 6540 | || || | || | || | || | |||||| || || || || ||||| || | Sbjct 323 GTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTTCGAGAACAGTC 264 Query 6541 TAATATATTACAATGG---CAGGCCTGATCTCATGAGAGTCAAAGATGACACTGTTGA-A 6596 | || |||| |||| || |||||| | ||| ||| ||| ||||| |||| Sbjct 263 TCATCTATT---ATGGACCTAGACCTGATTTAATGGAAGTACAAGGGGACAC-CTTGATC 208 Query 6597 AATGCAGGCACCACTCAGGTGTGCTGGAATGGGCAGGCAGGAGGCTTGGAAGGTCTTCGT 6656 | | || | || || || ||| | || ||| ||| || | || ||| | | Sbjct 207 AGTAAAGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTGAGA 148 Query 6657 CAAAAGGGTTGGAGTATTCTAAATCTATTAGTGATTCAAAGGGAGGCTAAAATTCGAAAT 6716 ||||| || ||||||||| | ||| | | ||| | | || ||||| | |||||| Sbjct 147 CAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCGAAAT 88 Query 6717 AC 6718 || Sbjct 87 AC 86 >seq219500 Length=51628 Score = 109 bits (120), Expect = 4e-20 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 6831 AACAATGATGCAATTATGAACGCTAT-TGAACAGGGAACCAACAAACTTGGATTGCTTAT 6889 |||||||| || || |||| |||| | | |||||| | || || | ||||| || || Sbjct 6351 AACAATGAGGCGATCATGACCGCTGTATCTGCAGGGA-CAAAGAAGTTAGGATTACTGAT 6293 Query 6890 CAACCAGGATGAAACAATGCAGTCGGCTGACTATTTAAATTATGGAAAAGTACCAATTTT 6949 |||| ||||| ||||||||| | |||| ||| |||||| |||||||| | || Sbjct 6292 CAACAGAGATGAGACAATGCAGAGCACAGACTTTTTGTCTTATGGTAAAGTACCTGTCTT 6233 Query 6950 TAGAGGTGTTATAAGAGGATTAGAAACAAAACGATGGTCTCGGGTAACATGTGTGACTAA 7009 ||||||| ||| | | | ||| ||||||||||||| | || ||||| || || || Sbjct 6232 TAGAGGTAATATCTTACCACTGGAAGCAAAACGATGGTCCAGAGTCACATGCGTCACCAA 6173 Query 7010 CGATCAGCTTCCAACTTGTGCTAATTTAATGTCGTCTGTATCCACAAATGCT 7061 ||||||||||| ||| ||||| | | || | | || ||||||||| Sbjct 6172 TGATCAGCTTCCTTCTTTGTCTAATGTGCTCTCTACCATCTCAACAAATGCT 6121 >seq49187 Length=20191 Score = 93.3 bits (102), Expect = 3e-15 Identities = 228/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 6164 AGATGATTTAGTCATCGGCTTAAAAGGCAAGGAAAGAGAATTAAAAATAGCAGGTAGATT 6223 |||||| | | ||||| | |||| |||||||||||| |||| | || | ||||| Sbjct 6345 AGATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATT 6404 Query 6224 TTTCTCTCTCATGTCTTGGAAATTGAGGGAATACTTTGTGATCACAGAGTACTTAATTAA 6283 ||||| |||||||| ||||| ||||| |||||| || | |||||| ||||||| || Sbjct 6405 CTTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAA 6464 Query 6284 GACACATTTTGTGCCTCTATTTCATGGTCTCACCATGGCTGACGACATGACTGCAGTCAT 6343 | | |||||| || || || | || |||||||| || ||||| || | Sbjct 6465 GGAGTTCTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGAC 6524 Query 6344 CAAAAAGATGTTGGAAAGCTC-ATCTGGACAAGGTTTG--TTA-GATTACTCAGCGGTAT 6399 || || | | || || || ||| ||||| | ||| || ||| | | | Sbjct 6525 AAAGAAACTCCTAGATAGTTCGATC-AACCAAGGGCAGAATTACTATAACT---CCATTT 6580 Query 6400 GCCTGGCCAACCATATAGATTATGAAAAATGGAACAATCACCAGCGAAAATTGTCAAACG 6459 ||||| || || ||||||||||||||||||| || || ||||| | | || Sbjct 6581 CTCTGGCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATA 6640 Query 6460 GTCCTGTCTTCAAGGTCATGGGCCAATTCCTTGGGTTTCC 6499 ||||||| ||| || ||||| || ||||| || || || Sbjct 6641 GTCCTGTGTTCCGAGTAATGGGTCAGTTCCTAGGTTTGCC 6680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34999507297104