Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025371.1 Length=11082 Score E Sequences producing significant alignments: (Bits) Value seq133769 221 9e-54 seq176488 147 2e-31 seq292816 116 3e-22 seq283927 107 1e-19 seq90283 100 2e-17 seq264483 91.5 1e-14 >seq133769 Length=136818 Score = 221 bits (244), Expect = 9e-54 Identities = 607/916 (66%), Gaps = 28/916 (3%) Strand=Plus/Minus Query 6290 ATCATAGGATTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTCACTG 6349 ||||| ||| |||||||||||||||||||| | |||| | || | || || || || Sbjct 122642 ATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTC 122583 Query 6350 ATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCATTAT 6409 ||||| ||| |||| || | |||||||| ||| ||| |||| || || ||| Sbjct 122582 ATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTAT 122523 Query 6410 GTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAAGATG 6469 || ||||| |||| ||| | || ||||| || ||||||||| ||| ||||| | Sbjct 122522 GTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTT 122463 Query 6470 TTGGACAACACAAACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCGAATCAC 6529 | |||| | |||||| | ||||| ||||| |||||| |||| || || Sbjct 122462 CTCGACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCAT 122403 Query 6530 ATTGATTACGAAAAATGGAACAATCATCA--GAGGAAAGAGTCA-AATGGACCGGTCTTT 6586 |||||||| |||| |||||||||||||| | || | | | ||| | ||||| Sbjct 122402 GTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAAT---ACTGTCTTC 122346 Query 6587 CGCGTCATGGGACAATTTTTGGGATATCCCCGGCTGTTTGAGAGAACTCACGAGTTCTTT 6646 | |||||||| || ||| ||||| || || || | |||||| || |||||||| Sbjct 122345 AGAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTC 122286 Query 6647 GAATCCAGCCTCATTTACTACAATGG---CAGACCAGATTTGATGGATGTGAGGGGAGAT 6703 || ||| | || |||| |||| |||||| ||||| ||||| || || ||| Sbjct 122285 GAGAACAGTC---TTGTCTACTATGGACCCAGACCGGATTTAATGGACATGCAAGGGGAT 122229 Query 6704 TCTTTGGTCAACACCACAGAAAAGCTGGTTTGTTGGGAAGGCCAAGCAGGAGGGCTAGAA 6763 ||||| | | || |||| | | || || |||||||| ||| |||||| || ||| Sbjct 122228 ACTTTGATTAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAA 122169 Query 6764 GGATTGAGGCAAAAAGGATGGAGCGTGTTGAATCTACTAGTCATCAATAGAGAGTCATCC 6823 || | || ||||| || |||||| | | ||||| || || || ||||| || Sbjct 122168 GGCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAA 122109 Query 6824 ATCAGGAACACGATAGTCAAAGTATTAGCTCAGGGAGACAATCAGGTCATATGCACCCAG 6883 | | | ||||| |||| ||| |||||| || || ||||| || || || |||| | | Sbjct 122108 ACCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTGCAACATG 122049 Query 6884 TA-CAAGACAAAAAATTACAAGAAT-GAAGAAGAGCTTAAG--ATGCTCTTGTCAGCCAT 6939 || | | || |||| || | |||||| | || | | | | || | Sbjct 122048 TATCGTCTCCCTGAA--ACAACCATCGGAGAAGAAATCGAGGAAAGAATTCG--AGAAGT 121993 Query 6940 GGTAGACAACAACCAAACTATCATGGATAGTATTGTGA-CAGGGACAGGCAAATTGGGAC 6998 | | || ||| || | || || || | ||| | |||| ||| | ||| ||||| Sbjct 121992 CATCAAGAATAACGAAGCCATAAT-GACTGCCGTGTCAGCAGGAACACGTAAACTGGGAT 121934 Query 6999 TAATCATCAACAATGATGAAACTATGCAATCTGCTGATTATCTCAATTATGGAAAGATGC 7058 | | ||||||| ||||| || |||||| |||||| ||| ||||| ||| | | Sbjct 121933 TGCTAATCAACAGAGATGAGACCATGCAAAGCACTGATTTTCTGTCCTATGGCAAGGTAC 121874 Query 7059 CAGTATTCCGAGG---CATCCTACGAGGGCTGGAGACTAAGAGATGGTCCAGAGTCACAT 7115 |||| ||| |||| |||||||| | ||| | ||||||||||| |||| |||| Sbjct 121873 CAGTGTTCAGAGGAAACATCCTAC---CTTTAGAGGCAAAGAGATGGTCACGAGTTACAT 121817 Query 7116 GCATCACCAATGACCAAATTCCAACATTGGCAGGAGTGATGTCTTCTGTGTCCACGAACG 7175 || | |||||||| ||| | || | ||| | || | || | | || || || | Sbjct 121816 GCGTAACCAATGATCAATTACCTTCTTTGTCCAATGTACTTTCAACCATTTCAACAAATG 121757 Query 7176 CACTCACAGTAGCTCA 7191 | ||||||||||||| Sbjct 121756 CTATCACAGTAGCTCA 121741 >seq176488 Length=2532 Score = 147 bits (162), Expect = 2e-31 Identities = 399/598 (67%), Gaps = 22/598 (4%) Strand=Plus/Minus Query 6290 ATCATAGGATTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTCACTG 6349 ||||| || ||||| || || |||||||| |||||| | | ||||| || || Sbjct 630 ATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTC 571 Query 6350 ATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTAA-GACCCATTA 6408 ||||||||| |||| || | |||||||| ||| ||| |||| || || || ||| Sbjct 570 ATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGA---ATTG 514 Query 6409 T--GTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAAG 6466 | || ||||| || || ||| | || |||||||||||||||||| || ||||| Sbjct 513 TACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAA 454 Query 6467 ATGTTGGACAACACAAACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCGAAT 6526 | | |||| | |||||| | || || || || |||||| | || || Sbjct 453 CTTCTCGACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAAC 394 Query 6527 CACATTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTCAAATGGACCGGTCTTT 6586 || |||||||| | |||||||| || ||||| | | | || || ||||| Sbjct 393 CATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTC 334 Query 6587 CGCGTCATGGGACAATTTTTGGGATATCCCCGG-CTGTTTGAGAGAACTCACGAGTTCTT 6645 || || ||||| || ||| |||| | | || | || || | ||||| ||||||||||| Sbjct 333 CGAGTGATGGGTCAGTTTGTGGG-TCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTT 275 Query 6646 TGAATCCAGCCTCATTTACTACAATGGC---AGACCAGATTTGATGGATGTG--AGGGGA 6700 || ||| ||||| || || ||| ||||| ||||| ||||| || |||||| Sbjct 274 CGAGAACAGTCTCATCTATTA---TGGACCTAGACCTGATTTAATGGAAGTACAAGGGGA 218 Query 6701 GATTCTTTGGTCA--ACACCACAGAAAAGCTGGTTTGTTGGGAAGGCCAAGCAGGAGGGC 6758 | | ||| ||| | | || || | ||| | |||||||||||||| ||| || | Sbjct 217 CA--CCTTGATCAGTAAAGCA-AGTTATCCTG-TCTGTTGGGAAGGCCAGAAAGGGGGTC 162 Query 6759 TAGAAGGATTGAGGCAAAAAGGATGGAGCGTGTTGAATCTACTAGTCATCAATAGAGAGT 6818 | || || ||||| |||||||| ||||| | ||||| | || || || |||| Sbjct 161 TCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAAG 102 Query 6819 CATCCATCAGGAACACGATAGTCAAAGTATTAGCTCAGGGAGACAATCAGGTCATATG 6876 | | | | || || | ||||| |||| ||||| ||||| ||||| ||||| Sbjct 101 CTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATG 44 >seq292816 Length=4775 Score = 116 bits (128), Expect = 3e-22 Identities = 248/363 (68%), Gaps = 13/363 (4%) Strand=Plus/Minus Query 6293 ATAGGATTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTT-CACTGAT 6351 || ||| ||||||| ||||||||||| | || | | || || || |||| |||| || Sbjct 1753 ATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAAAAGGAAGGCAGATTTTTTTTCACTCAT 1694 Query 6352 GTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCATTATGT 6411 ||| ||| | | | ||| || |||| ||| || | || || ||| ||||||| Sbjct 1693 GTCATGGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATAAAGGAATATTATGT 1634 Query 6412 TCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGT-------CGTGAAGA 6464 ||| || ||| ||||||||||||||||| || ||||| ||| || | || Sbjct 1633 TCCTCTTTTTTCTGGATTGACTATGGCAGACGATCTCACCAAAGTTATAGAAAGTTACGA 1574 Query 6465 AGATGTTG-GACAACACAAACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCG 6523 | | |||| | ||| | ||| ||||| | |||||||||||| || || | Sbjct 1573 AAAAGTTGCTAGAACTCTGCCGGTCAAGGCCAGGTCGACTATTCATCAATCACCTTACCC 1514 Query 6524 AATCACATTGATTACGAAAAATGGAACAATCATCAGAG-GAAAGAGTCAAATGGACCGGT 6582 || || | || ||| |||| ||||| || ||||| | | || ||| | ||| | Sbjct 1513 AACCATGTAGACTACAAAAAGTGGAATAACCATCAACGTGCCGAAGCCAACTATCCCGCT 1454 Query 6583 CTTTCGCGTCATGGGACAATTTTTGGGA-TATCCCCGGCTGTTTGAGAGAACTCACGAGT 6641 |||| || |||||||||||| ||||| ||||| | ||||||| |||||||| |||| Sbjct 1453 -TTTCAAGTAATGGGACAATTTCTGGGACTATCCGAAG-TGTTTGACAGAACTCATGAGT 1396 Query 6642 TCT 6644 ||| Sbjct 1395 TCT 1393 >seq283927 Length=152763 Score = 107 bits (118), Expect = 1e-19 Identities = 220/325 (68%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 6286 TCTCATCATAGGATTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTC 6345 ||||||||| ||||| || ||||| || | || | |||| | ||||| ||||| || Sbjct 1663 TCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTC 1604 Query 6346 ACTGATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCA 6405 || ||||| ||| | | | | || || || || || ||| | || | ||| Sbjct 1603 CCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGGAATT 1545 Query 6406 TTATGTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAA 6465 || | || |||||| |||| | || |||||||| ||| | | ||||| || || Sbjct 1544 CTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAA 1485 Query 6466 GATGTTGGACAACACAAACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCGAA 6525 | |||| ||||| || |||||||| ||||| || || |||| || || || Sbjct 1484 GTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCCAA 1425 Query 6526 TCACATTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTCAAATGGACCGGTCTT 6585 || || ||||||||||||||||| ||||| || || ||| | || ||||| || Sbjct 1424 CCATATCGATTACGAAAAATGGAATAATCACCAAAG---AGATGCTAACAACCCGGTGTT 1368 Query 6586 TCGCGTCATGGGACAATTTTTGGGA 6610 |||| ||||| ||||| |||||| Sbjct 1367 CAGCGTGATGGGGCAATTCTTGGGA 1343 >seq90283 Length=1560 Score = 100 bits (110), Expect = 2e-17 Identities = 250/379 (66%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 6291 TCATAGGATTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTCACTGA 6350 ||||||| | ||||| || || | || | |||| | || || || || || || | Sbjct 237 TCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCCTCA 296 Query 6351 TGTCTTGGCAGTTGAGAGA--GTACTTTGTGATAACGGAATATCTGATTAAGACCCATTA 6408 ||| ||| | || ||||| |||||| ||| || || || || || ||| | || Sbjct 297 TGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGTA 356 Query 6409 TGTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAAGAT 6468 |||||| || || ||||| || ||||| || || | || ||| || ||| | Sbjct 357 TGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAAAGTT 416 Query 6469 GTTGGACAACACAAACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCGAATCA 6528 |||| || | | | ||||||| ||| ||||| || |||| | | || || || Sbjct 417 ACTGGATAATTCCATCAATCAAGGATCAGATGACTACAACTCCATTTCTCTTGCAAACCA 476 Query 6529 CATTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTCAAATGGACCGGTCTTTCG 6588 || || || |||||||||||||| || |||||| || | || | || | || | Sbjct 477 TATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAGCTTTAAG 536 Query 6589 CGTCATGGGACAATTTTTGGGATATCCCCGGCTGTTTGAGAGAACTCACGAGTTCTTTGA 6648 |||||||||||||| | || | | | |||||| ||| ||||||||||||| Sbjct 537 AGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAACACACGAGTTCTTTGG 596 Query 6649 ATCCAGCCTCATTTACTAC 6667 | |||||| | |||||| Sbjct 597 AGGCAGCCTTGTCTACTAC 615 >seq264483 Length=101140 Score = 91.5 bits (100), Expect = 1e-14 Identities = 209/312 (67%), Gaps = 12/312 (4%) Strand=Plus/Plus Query 6287 CTCATCATAGGATTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTCA 6346 |||||||| | | | |||| ||||| ||||| |||| | | ||||||||||| ||| Sbjct 21491 CTCATCATTGAACTTGAGGGCAAAGAATGAGAGATAAAAAAGGAGGGAAGGTTCTTCTCA 21550 Query 6347 CTGATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGAT-TAAGACCCA 6405 |||||||||||| | ||||| | ||||| ||| || || ||||||| |||| Sbjct 21551 CTGATGTCTTGGAAAATGAGACAATACTTCATGACCACCGAGCATCTGATCAAAGA---- 21606 Query 6406 TTATGTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAA 6465 |||| | | || || || || ||||| || ||||| || || || || Sbjct 21607 ----GTTCTAAGAATTCAAAGA--AACAATGGCTGACGACCTTACGAAGGTTACCAAAAA 21660 Query 6466 GATGTTGGACAACACAAACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCGAA 6525 | || |||||| | ||| || || || |||||| || | || |||||| || Sbjct 21661 CTTCTT-GACAACTTTATCGGTCAGAGACAAGTCGACTACCATTCCACTTCTATAGCCAA 21719 Query 6526 TCACATTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTCAAATGGACCGGTCTT 6585 || |||| || || |||||||| |||||||| || |||| || | || || || Sbjct 21720 CCATGTTGACTATGAGAAATGGAATAATCATCAAAGAGCAGAGGTGAAAGACCCAGTTTT 21779 Query 6586 TCGCGTCATGGG 6597 | | ||||||| Sbjct 21780 TGCCATCATGGG 21791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35200269289248