Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025376.1 Length=11096 Score E Sequences producing significant alignments: (Bits) Value seq176488 201 8e-48 seq133769 168 5e-38 seq90283 158 9e-35 seq49187 136 3e-28 seq283927 111 1e-20 seq225232 102 6e-18 >seq176488 Length=2532 Score = 201 bits (222), Expect = 8e-48 Identities = 408/598 (68%), Gaps = 22/598 (4%) Strand=Plus/Minus Query 6300 ATCATAGGGTTAAAAGGAAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCCCTA 6359 ||||| || || ||||| |||||||||||| | || | | | ||| |||||||| Sbjct 630 ATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTC 571 Query 6360 ATGTCATGGCAGTTAAGGGAGTACTTCGTCATCACAGAGTACTTGATCAAAACACACTAT 6419 ||||| ||| |||||||| | ||||| ||| ||||| | | || ||| | || Sbjct 570 ATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAATTGTAC 511 Query 6420 GTCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAAGATG 6479 || || ||||||| ||||| ||||||||||||||||| ||| ||| ||||| | Sbjct 510 GTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAACTT 451 Query 6480 TTGGACAACAC---AAATGGACAAGGATTGGATGACTACTCCTCTATCTGTATTGCCAAC 6536 | |||| | | || |||||| ||| |||||||| || ||| | |||||| Sbjct 450 CTCGACAGTTCTTTACAT---CAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAAC 394 Query 6537 CACATTGACTACGAAAAATGGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTTT 6596 || |||| ||| | ||||||||||| ||||| | | | || || || || Sbjct 393 CATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTC 334 Query 6597 CGAGTAATGGGACAGTTTCTAGGGTATCCTAG-ACTGTTTGAAAGGACACATGAGTTCTT 6655 ||||| ||||| |||||| | |||| | | || ||| || | || || || |||||||| Sbjct 333 CGAGTGATGGGTCAGTTTGT-GGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTT 275 Query 6656 TGAGTCCAGCCTCATCTACTACAATGGA---AGACCAGACCTGATGGATGTGAGAGGGGA 6712 ||| ||| |||||||| | ||||| ||||| || | ||||| || |||||| Sbjct 274 CGAGAACAGTCTCATCTATT---ATGGACCTAGACCTGATTTAATGGAAGTACAAGGGGA 218 Query 6713 TTCATTGATCAACACTACAGACAAATTA----GTGTGTTGGGAGGGACAAGCAGGAGGTC 6768 | ||||| || || || ||| ||| || |||||||| || || ||| |||| Sbjct 217 CACCTTGAT---CAGTAAAG-CAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTC 162 Query 6769 TGGAAGGATTGCGACAAAAAGGATGGAGCGTTTTGAACCTACTAGTCATAAACAGAGAGT 6828 | || || ||| |||||||||| ||||| || |||| | || || | |||| Sbjct 161 TCGAGGGTTTGAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAAG 102 Query 6829 CTTCCATCCGAAATACTGTGGTAAAGGTTCTTGCCCAAGGAGACAATCAGGTGATCTG 6886 || | ||||||||| | || ||| || || || || ||||| |||||||| || Sbjct 101 CTAAGACCCGAAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATG 44 >seq133769 Length=136818 Score = 168 bits (186), Expect = 5e-38 Identities = 398/596 (67%), Gaps = 14/596 (2%) Strand=Plus/Minus Query 6300 ATCATAGGGTTAAAAGGAAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCCCTA 6359 ||||| || | || ||||| |||||||| |||| | | || |||||||||| || Sbjct 122642 ATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTC 122583 Query 6360 ATGTCATGGCAGTTAAGGGAGTACTTCGTCATCACAGAGTACTTGATCAAAACACACTAT 6419 ||||| ||| ||||| | | ||||| ||| ||||| | | || ||| ||| Sbjct 122582 ATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTAT 122523 Query 6420 GTCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAAGATG 6479 || || |||| | ||||| || ||||| || ||||| ||| ||| ||||| | Sbjct 122522 GTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTT 122463 Query 6480 TTGGACAACAC---AAATGGACAAGGATTGGATGACTACTCCTCTATCTGTATTGCCAAC 6536 | |||| | | || |||||| |||||||| || || ||| | |||||| Sbjct 122462 CTCGACAGTTCTTTACAT---CAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAAC 122406 Query 6537 CACATTGACTACGAAAAATGGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTTT 6596 || |||| ||| |||| ||||| |||||||| | | |||| | | || || Sbjct 122405 CATGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTC 122346 Query 6597 CGAGTAATGGGACAGTTTCTAGGGTATCCTAGA-CTGTTTGAAAGGACACATGAGTTCTT 6655 |||| ||||| |||||| | ||| | | ||| || || | || || ||||||||||| Sbjct 122345 AGAGTCATGGGTCAGTTTGT-GGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTT 122287 Query 6656 TGAGTCCAGCCTCATCTACTACAATGGA---AGACCAGACCTGATGGATGTGAGAGGGGA 6712 ||| ||| || |||||| ||||| ||||| || | ||||| || |||||| Sbjct 122286 CGAGAACAGTCTTGTCTACT---ATGGACCCAGACCGGATTTAATGGACATGCAAGGGGA 122230 Query 6713 TTCATTGATCAACACTACAGACAAATTAGTGTGTTGGGAGGGACAAGCAGGAGGTCTGGA 6772 | | ||||| | || ||||| | || || ||||| |||||| ||||||||| || Sbjct 122229 TACTTTGATTAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGA 122170 Query 6773 AGGATTGCGACAAAAAGGATGGAGCGTTTTGAACCTACTAGTCATAAACAGAGAGTCTTC 6832 ||| | ||||||| || |||||| || | || || || || | ||||| | Sbjct 122169 AGGCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAA 122110 Query 6833 CATCCGAAATACTGTGGTAAAGGTTCTTGCCCAAGGAGACAATCAGGTGATCTGCA 6888 | ||| || ||| | || || | || ||||| ||||| || |||||||||| Sbjct 122109 AACCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTGCA 122054 >seq90283 Length=1560 Score = 158 bits (174), Expect = 9e-35 Identities = 358/528 (68%), Gaps = 24/528 (5%) Strand=Plus/Plus Query 6301 TCATAGGGTTAAAAGGAAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCCCTAA 6360 |||||||| | || || ||||| | ||| | || | | || |||||||||||||| | Sbjct 237 TCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCCTCA 296 Query 6361 TGTCATGGCAGTTAAGGGA--GTACTTCGTCATCACAGAGTACTTGATCAAAACACACTA 6418 ||| |||| | ||||| || ||||||||| || |||||| | ||||| | || Sbjct 297 TGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGTA 356 Query 6419 TGTCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAAGAT 6478 ||| ||| | ||| ||| | || ||||| || || | || || || ||| | Sbjct 357 TGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAAAGTT 416 Query 6479 GTTGGACAA---CACAAATGGACAAGGATTGGATGACTACTCCTCTATCTGTATTGCCAA 6535 |||| || || ||| ||||||| ||||||||| ||| || | | |||| || Sbjct 417 ACTGGATAATTCCATCAAT---CAAGGATCAGATGACTACAACTCCATTTCTCTTGCAAA 473 Query 6536 CCACATTGACTACGAAAAATGGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTT 6595 ||| || ||||| ||||||||||| || || |||||| || |||| | ||||| || Sbjct 474 CCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAGCTTT 533 Query 6596 TCGAGTAATGGGACAGTTTCTAGGGTATCCTAGA-CTGTTTGAAAGGACACATGAGTTCT 6654 |||| |||||||| ||| ||| | ||||| |||||| ||||| ||||||| Sbjct 534 AAGAGTCATGGGACA-ATTCATCGGTTTACTAGAGTTGTTTGTTCAAACACACGAGTTCT 592 Query 6655 TTGAGTCCAGCCTCATCTACTACAATGGA---AGACCAGACCTGATGGATGTGAGA-GGG 6710 ||| |||||| |||||||| ||| | || ||| | ||||| || ||| || Sbjct 593 TTGGAGGCAGCCTTGTCTACTAC---GGACCCCGTCCTGACTTAATGGAAGT-AGATGGA 648 Query 6711 GATTCATTGATCAACACTACAGACAAATT---AGTGTGTTGGGAGGGACAAGCAGGAGGT 6767 || ||| | ||| | || || || || || ||| || |||| ||||| Sbjct 649 GAGTCACTACGGAAC---AAAGGGAACTTCCCTGTCTGCTGGAAGAGACAGCTCGGAGGC 705 Query 6768 CTGGAAGGATTGCGACAAAAAGGATGGAGCGTTTTGAACCTACTAGTC 6815 ||||||| | ||||||||||| |||||| || | || ||| | ||| Sbjct 706 TTGGAAGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCTATTGGTC 753 >seq49187 Length=20191 Score = 136 bits (150), Expect = 3e-28 Identities = 246/360 (68%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 6297 CTCATCATAGGGTTAAAAGGAAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCC 6356 || || || ||| | |||| |||||| |||||| | || | | | |||||| ||||| Sbjct 6352 CTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCTTCTCG 6411 Query 6357 CTAATGTCATGGCAGTTAAGGGAGTACTTCGTCATCACAGAGTACTTGATCAAAACACAC 6416 || ||||| ||| | | ||| | |||| ||||| |||||| |||| || || | Sbjct 6412 CTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGGAGTTC 6471 Query 6417 TATGTCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAAG 6476 ||||| || | ||| |||| |||| ||||| ||||| || || || ||||| Sbjct 6472 TATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACAAAGAAA 6531 Query 6477 ATGTTGGACAACACAAATGGACAAGGATTGGATGACTACTCCTCTATCTGTATTGCCAAC 6536 | | || | | | ||||| | || |||| ||| || | | | || || Sbjct 6532 CTCCTAGATAGTTCGATCAACCAAGGGCAGAATTACTATAACTCCATTTCTCTGGCAAAT 6591 Query 6537 CACATTGACTACGAAAAATGGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTTT 6596 ||| | || || |||||||||||||| |||||| || ||| | ||| |||| ||||| Sbjct 6592 CACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTGTGTTC 6651 Query 6597 CGAGTAATGGGACAGTTTCTAGGGTATCCTAGACTGTTTGAAAGGACACATGAGTTCTTT 6656 ||||||||||| ||||| ||||| | ||| ||||| | | || |||||||||||| Sbjct 6652 CGAGTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCATGAGTTCTTT 6711 >seq283927 Length=152763 Score = 111 bits (122), Expect = 1e-20 Identities = 239/354 (68%), Gaps = 5/354 (1%) Strand=Plus/Minus Query 6261 AAGACAGTAGA-TGAAAAAGGGTTGCCCCGTGACAGTCTCATCATAGGGTTAAAAGGAAA 6319 |||||| ||| ||| || || ||| | | || ||||||||| || ||||||||||| Sbjct 1699 AAGACAAAAGAATGACAACGGATTGGACAGAGATGATCTCATCATTGGATTAAAAGGAAA 1640 Query 6320 GGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCCCTAATGTCATGGCAGTTAAGGGA 6379 ||| | ||| | || | | |||||||| |||||||||||||| ||| | | | Sbjct 1639 GGAATGTGAAATCAAGAAGGAAGGAAGATTCTTCTCCCTAATGTCCTGGAATCTTCAACA 1580 Query 6380 GTACTTCGTCATCACAGAGTACTTGATCAAAACACACTATGTCCCGTTGTTCAAGGGACT 6439 || |||||||| ||||| || | | || | ||| | || | || ||||| Sbjct 1579 ATATTTCGTCATTACAGA-AACCTACTAAAGGAATTCTACATACCCCTATTTGCAGGACT 1521 Query 6440 GACGATGGCAGATGACCTTACATCCGTTGTGAAGAAGATGTTGGACAACACAAATGGACA 6499 || |||||||| ||| | | || | || ||| |||| ||||| || ||||| Sbjct 1520 CACCATGGCAGACGACTTGATGGAAGTCGCAAAAAAGTTGTTAGACAATTCACCGGGACA 1461 Query 6500 AGGATTGGATGACTACTCCTCTATCTGTATTGCCAACCACATTGACTACGAAAAATGGAA 6559 ||| ||| || ||| | || ||||||||||| || || |||||||||||||| Sbjct 1460 AGGGCAGGACGATTACCAATTGATTACCATTGCCAACCATATCGATTACGAAAAATGGAA 1401 Query 6560 TAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTTTCGAGTAATGGGACAGTT 6613 |||||| || || ||| |||| || ||||| | || ||||| || || Sbjct 1400 TAATCACCAAAG---AGATGCTAACAACCCGGTGTTCAGCGTGATGGGGCAATT 1350 >seq225232 Length=278362 Score = 102 bits (112), Expect = 6e-18 Identities = 411/635 (65%), Gaps = 22/635 (3%) Strand=Plus/Plus Query 6310 TAAAAGGAAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCCCTAATGTCATGGC 6369 |||| || || || ||||| | || | | || |||||| || || ||||||||| Sbjct 38731 TAAAGGGCAAAGAAAGAGAGATCAAGAGGGAGGGGAGATTTCTCCTTCTCATGTCATGGA 38790 Query 6370 AGTTAAGGGAGTACTTCGTCATCACAGAGTACTTG--ATCAAAACACACTATGTCCCGTT 6427 || | | | |||||||| || || || | ||||| | |||| || || Sbjct 38791 AGATGCAACAATTATTCGTCATGACTGAACACGTCTTATCAAGGAATTTCATGTTCCATT 38850 Query 6428 GTTCAAGGGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAAGATGTTGGACAA 6487 ||| ||| || | |||||||| ||||| || || || ||||| | ||||| Sbjct 38851 GTTTTCGGGCCTTAAAATGGCAGACGACCTCACTAGAGTGACTAAAAAGATTCTTGACAA 38910 Query 6488 CACAAATGGACAAGGATTGGATGACTACTCCTCT-ATCTGTATTGCCAACCACATTGACT 6546 | ||| ||||| | ||| || || | || | | | |||||||| | |||| Sbjct 38911 CTCAATCAACCAAGGTCAAGTTGA-TAATCGTTGCATTTCTCTAGCCAACCATGTGGACT 38969 Query 6547 ACGAAAAATGGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTTTCGAGTAATGG 6606 |||| ||||| || ||||| ||||| || | || | ||| || ||| | |||| Sbjct 38970 ACGAGAAATGAAACAATCACCAGAGAGCCGAAGCAAACGATCCTGTCTTTACCATCATGG 39029 Query 6607 GACAGTTTCTAGGGTATCCTAGACTG--TTTGAAAGGACACATGAGTTCTTTGAGTCCAG 6664 | | || |||| | ||| | | || |||| ||| | |||||||| || | ||| Sbjct 39030 TAAAATTCTTAGG-TCTCCCAAA-TGCCTTTGCAAGAATTCATGAGTTTTTCCAACACAG 39087 Query 6665 CCTCATCTACTACAATGGA---AGACCAGACCTGATGGATGTGAGAGGGGATTCATTGAT 6721 ||| | ||||| |||| || || || |||||||| ||| || ||||| || Sbjct 39088 CCTTGTGTACTA---TGGACCAAGGCCTGATCTGATGGAAGTGGTTGGAGATTCCCTG-- 39142 Query 6722 CAACACTACAGACAAATTA--GTGTGTTGGGAGGGACAAGCAGGAGGTCTGGAAGGATTG 6779 ||| || | || | |||||||||||||| || ||| || |||||||| || Sbjct 39143 CAAAACAAGGGATCTTTCCCCGTGTGTTGGGAGGGCCAGTTAGGGGGACTGGAAGGGTTA 39202 Query 6780 CGACAAAAAGGATGGAGCGTTTTGAACCTACTAGTCATAAACAGAGAGTCTTCCATCCGA 6839 | |||| |||||||||| | | ||||| | || || |||||| | | || Sbjct 39203 AGGCAAAGAGGATGGAGCATCGTCAACCTTTTGGTTTTACTAAGAGAGGCCAAAACTCGC 39262 Query 6840 AATACTGTGGTAAAGGTTCTTGCCCAAGGAGACAATCAGGTGATCTGCACTCAATACAAG 6899 || || |||||||| | ||||||||||| ||||| || ||||||| | ||||| Sbjct 39263 AACACCCTGGTAAAGACCTTGGCCCAAGGAGATAATCAAGTTATCTGCAATTCGCACAAG 39322 Query 6900 --ACGAAAAACTACAAAAATGAAGAAGAGCTGAAG 6932 | ||||| || |||||||| || || ||| Sbjct 39323 TTGCCTGAAACT--AACAATGAAGAGGACCTAAAG 39355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35244883065280