Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025384.1 Length=11190 Score E Sequences producing significant alignments: (Bits) Value seq283927 111 1e-20 seq90283 104 2e-18 >seq283927 Length=152763 Score = 111 bits (122), Expect = 1e-20 Identities = 286/423 (68%), Gaps = 22/423 (5%) Strand=Plus/Minus Query 6350 TACTTTGTTATCACAGAATATCTCATCAAAGAGTTCTACCTCCCCCTCTTCTCCGGACTC 6409 || || || || |||||| | || | || || |||||| | ||||| || | |||||| Sbjct 1578 TATTTCGTCATTACAGAA-ACCTACTAAAGGAATTCTACATACCCCTATTTGCAGGACTC 1520 Query 6410 ACCATGGCGGATGACTTCAACACAGTCACCGACAAAATGCT-GA-AGTGCAGCGACGGAC 6467 |||||||| || ||||| | |||| | | || || | || | | || || |||| Sbjct 1519 ACCATGGCAGACGACTTGATGGAAGTCGCAAAAAAGTTGTTAGACAATTCACCG--GGAC 1462 Query 6468 AAGGGACAAATGACTACAAAACTGTGACCATTGCCAACCACCTGGACTACACTAAATGGA 6527 ||||| | || ||| || | |||||||||||||| | || ||| ||||||| Sbjct 1461 AAGGGCAGGACGATTACCAATTGATTACCATTGCCAACCATATCGATTACGAAAAATGGA 1402 Query 6528 ACAACCACCAGCGGGCAGAAGCAAACAATCCGGTATTCAAAGTGATGGGGCAATTCCTGG 6587 | || ||||| | ||| || ||||| ||||| |||| ||||||||||||||| ||| Sbjct 1401 ATAATCACCAAAG---AGATGCTAACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTGG 1345 Query 6588 GGTACCCCAATCTATTCACCAGGTCCCACGAGATCTTCCAGAAGTCACTGATCTATTACA 6647 | || || | || || | ||||| | |||| | || | || |||||| Sbjct 1344 GACTGCCAAACTTGTTAACTCGCACCCACAAATTCTTTGAAAACAGTTTAATTTATTAC- 1286 Query 6648 AGGAC--AGGCCGGACCTGATGCAGG---TGGTCGAGGGGCGTGTGGTGAACAAGGAGGG 6702 |||| | |||||||||||| ||| || ||| || | | |||| |||| Sbjct 1285 -GGACCACGTCCGGACCTGATGGAGGCCAAGG--GAGACACG-CTAGAGAAC--CGAGGC 1232 Query 6703 CTCCTTC--GTCTGCTGGAATGGTCAGGACGGGGGACTGGAGGGCTTGCGGCAGAAGGGC 6760 | | | | || ||||||||||| ||| || ||||||||||| | || |||||||| Sbjct 1231 CACTTCCCTGTTTGCTGGAATGGCCAGTTGGGTGGACTGGAGGGTCTCCGTCAGAAGGGG 1172 Query 6761 TGG 6763 ||| Sbjct 1171 TGG 1169 >seq90283 Length=1560 Score = 104 bits (114), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 6348 AGTACTTTGTTATCACAGAATATCTCATCAAAGAGTTCTACCTCCCCCTCTTCTCCGGAC 6407 ||||||| || || || || |||||||| ||| | || | || |||||||| ||| Sbjct 317 AGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGTATGTTCCGCTCTTCTCTGGAT 376 Query 6408 TCACCATGGCGGATGACTTCAACACAGTCACCGACAAAATGCTG---AAGTGCAGCGACG 6464 | || |||||||| || || | || ||| ||| | || | ||| || | || | | Sbjct 377 TAACAATGGCGGACGATTTGACCAAAGTGACCAAAAAGTTACTGGATAATTCCATCAAT- 435 Query 6465 GACAAGGGACAAATGACTACAAAACTGTGACCATTGCCAACCACCTGGACTACACTAAAT 6524 ||||| || |||||||||| | | | |||| ||||| | ||||| |||| Sbjct 436 --CAAGGATCAGATGACTACAACTCCATTTCTCTTGCAAACCATATAGACTATGAAAAAT 493 Query 6525 GGAACAACCACCAGCGGGCAGAAGCAAACAATCCGGTATTCAAAGTGATGGGGCAATTC 6583 |||||||||||||| ||| || ||| ||| |||| | || | ||| ||||| |||||| Sbjct 494 GGAACAACCACCAGAGGGGAGCAGCTAACGATCCAGCTTTAAGAGTCATGGGACAATTC 552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35544432704352