Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025387.1 Length=11492 Score E Sequences producing significant alignments: (Bits) Value seq133769 156 3e-34 seq49187 122 6e-24 seq90283 91.5 1e-14 >seq133769 Length=136818 Score = 156 bits (172), Expect = 3e-34 Identities = 627/960 (65%), Gaps = 32/960 (3%) Strand=Plus/Minus Query 6548 GAGTTTTTGCAGAACATCAACGACAATGGGCTCCCATGGGA-GTCTCTGGTGATCGGGCT 6606 ||||| ||| | | ||||| ||||| || ||||| | || | || | | ||||| || Sbjct 122690 GAGTTCTTGGAAGAGATCAATGACAAGGGCCTCCCCAGAGAAGACT-TAATCATCGGACT 122632 Query 6607 AAAACCAAAAGAAAGAGAATTGAAGCTGGTGGGTAGGTTCTTCTCGTTGATGTCATGGGA 6666 || |||||| ||||| ||||| | |||| | || ||||| | ||||| ||| | Sbjct 122631 GAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTCGTGGAA 122572 Query 6667 GCTCAGGGAGTACTTTGTGGTGACTGAGTATCTGATCAAGAAGCATTTTGTCCCTTTGTT 6726 | | | | |||||||| || || |||| || || || | ||| || |||| Sbjct 122571 GTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTACCACTGTT 122512 Query 6727 TAAGGGGTTGGCCATGGCTGATGACCTGACAGAGGTGATAAAAAAGATGCTGGACAGTGC 6786 || || | | ||||| || ||||| ||| | || | ||| || | || |||||| | Sbjct 122511 TAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTCGACAGTTC 122452 Query 6787 ATATGGCCAGGGACTGGAC-GACTACAGTGCAGTGTGTATTGCCAACCACATTGATTATG 6845 | || |||| | || |||||| | | ||| | |||||||| ||||||| Sbjct 122451 TTTACATCAAGGAC-GAACAGACTACTCATCCATTTGTGTAGCCAACCATGTTGATTACC 122393 Query 6846 AGAAGTGGAACAACCACCAGAGGAAGGAGTCCAACAGATA-TGTATTCAGAGTTATGGGT 6904 | ||||||||||| || || | | | |||| ||| ||| |||||||| |||||| Sbjct 122392 AAAAGTGGAACAATCATCAACGTGGTTCGGCTAACA-ATACTGTCTTCAGAGTCATGGGT 122334 Query 6905 CAATGTTTGGG-GTACCCTAACTTGATTGAACGGACTCATGAGTTCTTTGAGAACAGTTT 6963 || | | |||| |||| ||||| | | | || ||||||||||| ||||||||| | Sbjct 122333 CAGTTTGTGGGACTACCAGAACTT-TTCGTGAGAACGCATGAGTTCTTCGAGAACAGTCT 122275 Query 6964 GGTTTA-TTTGAACATGAGACCAGATGAGATGGTGGT-CGATGGTAGACATGTTCGACCG 7021 || || | || || ||||| ||| |||| | | | || | || | | | Sbjct 122274 TGTCTACTATGGAC-CCAGACCGGATTTAATGGACATGCAAGGGGATACTTTGATTAGC- 122217 Query 7022 AGAGGGGAC-ATGATGTCCTGTTGGGAGGGACAAGCAGGTGGTCTGGAAGGGCTGAGGCA 7080 | || ||| || || || ||||| |||||| ||| ||||| ||||| || || || Sbjct 122216 AAAGCAGACTATCCCGT-ATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACA 122158 Query 7081 GAAGGGGTGGAGCATCCTCAACCTGC---TTCTGATCAGA-AGGATCTCaaaaatccgaa 7136 |||||||||||||| | || || | | || | || ||| |||||| ||| | Sbjct 122157 AAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGG----CAAAAACCCGTA 122102 Query 7137 atacaaaaataaaaatATTGGCGCAAGGGGACAATCAGGTCATCTGTACACA-GTACAAG 7195 | || | | |||| ||| |||||||||||||| || || ||||| | ||| ||| | Sbjct 122101 ACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTGCA-ACATGTA-TCG 122044 Query 7196 TTGCCATCAACCAGGAATGAGA-AAGAGACTGTTGACGCCAT---AAAAGGCATGGTCCA 7251 | || | || || || || |||| | | || || | ||| || || | Sbjct 122043 TCTCCCTGAAACAACCATCGGAGAAGAAATCGAGGAAAGAATTCGAGAAGTCA---TCAA 121987 Query 7252 GAACAACAATGCCATCATGGAGTCTATAGAAGAAGGGACCAAGAAGTTGGGCTTGCTCAT 7311 ||| ||| | ||||| ||| | | || ||| || || |||| ||||| || Sbjct 121986 GAATAACGAAGCCATAATGACTGCCGTGTCAGCAGGAACACGTAAACTGGGATTGCTAAT 121927 Query 7312 AAACCAAGATGAGACAGTCCAATGTGCAGACTACATGAATTATGGAAAGGTCCCAATCTT 7371 ||| ||||||||| | ||| | | || | || ||||| ||||| ||| | || Sbjct 121926 CAACAGAGATGAGACCATGCAAAGCACTGATTTTCTGTCCTATGGCAAGGTACCAGTGTT 121867 Query 7372 CAGAGGGAACATTAGAGGCCTGGAGACCAAGAGGTGGTCCAGGGTCACATGTGTTACCAA 7431 |||||| ||||| | | ||| | ||||| ||||| | || ||||| || ||||| Sbjct 121866 CAGAGGAAACATCCTACCTTTAGAGGCAAAGAGATGGTCACGAGTTACATGCGTAACCAA 121807 Query 7432 CGATCAGCTCCCAACTTTTGCTAATGTGATGTCCTCCGTCTCTACCAATGCTTTGACAGT 7491 ||||| | || |||| | ||||| | || || | || || |||||| | ||||| Sbjct 121806 TGATCAATTACCTTCTTTGTCCAATGTACTTTCAACCATTTCAACAAATGCTATCACAGT 121747 >seq49187 Length=20191 Score = 122 bits (134), Expect = 6e-24 Identities = 270/405 (67%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 6548 GAGTTTTTGCAGAACATCAACGACAATGGGCTCCCATGGGAGTCTCTGGTGATCGGGCTA 6607 ||||| ||| | | ||| ||||| ||| ||| || | || ||| | |||||||| Sbjct 6307 GAGTTCTTGGAAAGCATAAACGAATCTGGACTCACAAGAGATGACCTGATAATCGGGCTC 6366 Query 6608 AAACCAAAAGAAAGAGAATTGAAGCTGGTGGGTAGGTTCTTCTCGTTGATGTCATGGGAG 6667 ||| ||| ||||||||| | ||| | || || ||||||||| | ||||| ||| | Sbjct 6367 AAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCTTCTCGCTCATGTCGTGGAAT 6426 Query 6668 CTCAGGGAGTACTTTGTGGTGACTGAGTATCTGATCAAGAAGCATTTTGTCCCTTTGTTT 6727 || ||| | |||| || || ||| | | || ||| || | ||| || | || Sbjct 6427 CTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGGAGTTCTATGTGCCCCTTTTC 6486 Query 6728 AAGGGGTTGGCCATGGCTGATGACCTGACAGAGGTGATAAAAAAGATGCTGGACAGTGCA 6787 ||| ||| | ||||||||||| ||||| |||||| ||| || | || || ||| | Sbjct 6487 TCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACAAAGAAACTCCTAGATAGTTCG 6546 Query 6788 TATGGCCAGGGACTGGACGACTACAGTGCAGTGTGTATTGCCAACCACATTGATTATGAG 6847 ||| || | | | |||| | | | | | | || || ||| | |||||||| Sbjct 6547 ATCAACCAAGGGCAGAATTACTATAACTCCATTTCTCTGGCAAATCACGTAGATTATGAA 6606 Query 6848 AAGTGGAACAACCACCAGAGGAAGGAGTCCAACAGATATGTATTCAGAGTTATGGGTCAA 6907 || ||||| ||||| ||| || |||| | || || ||| ||| |||| |||||||| Sbjct 6607 AAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTGTGTTCCGAGTAATGGGTCAG 6666 Query 6908 TGTTTGGGGTACCCTAACTTGATTGAACGGACTCATGAGTTCTTT 6952 | | || | ||| | || | | || ||||||||||||||| Sbjct 6667 TTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCATGAGTTCTTT 6711 >seq90283 Length=1560 Score = 91.5 bits (100), Expect = 1e-14 Identities = 191/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 6593 CTGGTGATCGGGCTAAAACCAAAAGAAAGAGAATTGAAGCTGGTGGGTAGGTTCTTCTCG 6652 ||||| || ||||| || || ||| | ||| | ||| || ||| || || ||||| Sbjct 233 CTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCC 292 Query 6653 TTGATGTCATGGGAGCTCAGGGA--GTACTTTGTGGTGACTGAGTATCTGATCAAGAAGC 6710 | |||| |||| | | || || |||||| ||| ||| ||||| || |||||| ||| Sbjct 293 CTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGC 352 Query 6711 ATTTTGTCCCTTTGTTTAAGGGGTTGGCCATGGCTGATGACCTGACAGAGGTGATAAAAA 6770 | ||| || | || || || | ||||| || || |||| | |||| |||| Sbjct 353 TGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAA 412 Query 6771 AGATGCTGGACAGTGC-AT--ATGGCCAGGGACTGGACGACTACAGTGCAGTGTGTATTG 6827 || | ||||| | | | || || || ||| || ||||||| | | | | ||| Sbjct 413 AGTTACTGGATAATTCCATCAAT---CAAGGATCAGATGACTACAACTCCATTTCTCTTG 469 Query 6828 CCAACCACATTGATTATGAGAAGTGGAACAACCACCAGAGG 6868 | ||||| || || ||||| || |||||||||||||||||| Sbjct 470 CAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGG 510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36506815587328