Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025392.1 Length=11121 Score E Sequences producing significant alignments: (Bits) Value seq133769 154 1e-33 seq283927 149 4e-32 seq49187 122 6e-24 seq90283 116 3e-22 seq292816 114 9e-22 seq219500 78.8 7e-11 >seq133769 Length=136818 Score = 154 bits (170), Expect = 1e-33 Identities = 592/913 (65%), Gaps = 34/913 (4%) Strand=Plus/Minus Query 6256 GATGATTTGATAATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTC 6315 || || || || |||||||| || |||||||||||||| |||||| | ||| |||| Sbjct 122651 GAAGACTTAATCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTT 122592 Query 6316 TTTTCATTGATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAAA 6375 || || | ||||| ||||| || ||| |||| ||||| ||| ||| |||| || ||| Sbjct 122591 TTCTCTCTCATGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAA 122532 Query 6376 ACGCATTTTGTCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTCATC 6435 | | ||| || || ||| |||||| || ||||| || || | || ||| | Sbjct 122531 GAGTTGTATGTACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACA 122472 Query 6436 AAGAAAATGCTAGAAAGTTCATCCGGTCAAGGGTTGAATGACTATTCTGCAATCTCAATC 6495 |||||| | || || ||||| | |||||| | ||||| || | || | | Sbjct 122471 AAGAAACTTCTCGACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTA 122412 Query 6496 GCAAATCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCT 6555 || || || | ||||| | || ||||||||||| || | | | | ||| | || Sbjct 122411 GCCAACCATGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACT 122352 Query 6556 GTATTCAAAGTGATGGGACAATTTCTGGGA-TATCCAAATTTGATATCACGCACCCATGA 6614 || |||| ||| ||||| || ||| ||||| || | || || | | | || ||||| Sbjct 122351 GTCTTCAGAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGA-GAACGCATGA 122293 Query 6615 ATTCTTTGAGAAGAGTTTGATTTATTATAATGGA---AGACCCGATTTGATGAGAGTCCG 6671 ||||| ||||| ||| | | || | ||||| ||||| ||||| ||| | | Sbjct 122292 GTTCTTCGAGAACAGTCTTGTCTACT---ATGGACCCAGACCGGATTTAATG---GACAT 122239 Query 6672 GAATGGAGTGGTTGAGAATTCCTCAG-ATACTA--GAGTATGTTGGAATGGACAAGCCGG 6728 | | || | | || | | || | |||| ||||| ||| | |||||| || Sbjct 122238 GCAAGGGGATACTTTGATTAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGG 122179 Query 6729 GGGTCTAGAGGGTTTGAGACAGAAGGGCTGGAGCATCCTAAATTTGTTGGTTATACAGAG 6788 ||||| || || | ||||| ||||| |||||||| ||||| | | || | | | | Sbjct 122178 AGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCG 122119 Query 6789 GGAATCCAAAATCCGTAATACATCTGTCAAGGTATTGGCACAAGGAGACAATCAAGTAAT 6848 || | |||| |||||| || | || || ||| || ||||| ||||| ||||| || Sbjct 122118 AGAGGCAAAAACCCGTAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGAT 122059 Query 6849 TTGTACCCAATACAAGACT-----AAACAACATCGCTCGGAGATTGAGCTTAGAGG--GG 6901 || | | || | || |||||| | ||||||| || | |||| | Sbjct 122058 CTGCAACATGTA-TCGTCTCCCTGAAACAA---CCATCGGAGA-AGA-AATCGAGGAAAG 122005 Query 6902 CATTGGAACAG--ATGAAGTCGAACAATCAAACAATAATGGATTCAAT-TGAGCGGGGAA 6958 ||| || || || || ||| || || | |||||| | | | | ||| |||| Sbjct 122004 AATTCGAGAAGTCATCAA---GAATAACGAAGCCATAATGACTGCCGTGTCAGC-AGGAA 121949 Query 6959 CAAACAGGCTTGGGCTTTTAATCAATCAAGATGAAACAATGCAATCGGCTGATTATCTTA 7018 || | || || | ||||||| |||||| || |||||| |||||| ||| Sbjct 121948 CACGTAAACTGGGATTGCTAATCAACAGAGATGAGACCATGCAAAGCACTGATTTTCTGT 121889 Query 7019 ATTACGGTAAAGTTCCAATCTTCCGAGGGGTCATACGAGGACTAGAGACTAAAAGATGGT 7078 || || || || ||| | ||| |||| ||| | | ||||| | || ||||||| Sbjct 121888 CCTATGGCAAGGTACCAGTGTTCAGAGGAAACATCCTACCTTTAGAGGCAAAGAGATGGT 121829 Query 7079 CCAGGGTGACCTGCGTCACCAATGATCAACTGCCTACTTGTGCTAATTTGCTGTCATCTG 7138 | | || || ||||| |||||||||||| | ||| ||| | ||| | || ||| | Sbjct 121828 CACGAGTTACATGCGTAACCAATGATCAATTACCTTCTTTGTCCAATGTACTTTCAACCA 121769 Query 7139 TCTCAACTAATGC 7151 | ||||| ||||| Sbjct 121768 TTTCAACAAATGC 121756 >seq283927 Length=152763 Score = 149 bits (164), Expect = 4e-32 Identities = 268/388 (69%), Gaps = 8/388 (2%) Strand=Plus/Minus Query 6256 GATGATTTGATAATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTC 6315 |||||| | || || ||| | |||||||| || | ||| | |||| | ||| |||||| Sbjct 1668 GATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTC 1609 Query 6316 TTTTCATTGATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAAA 6375 || || | ||||| ||||| | | | ||||||| || || || ||| | || | || Sbjct 1608 TTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACT--AA 1552 Query 6376 ACGCATTTTG--TCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTCA 6433 | | ||| | | || || ||| |||||||||||||| || || ||| |||| Sbjct 1551 AGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCG 1492 Query 6434 TCAAGAAAATGCTAGAAAGTTCATCCGGTCAAGGGTTGAATGACTATTCTGCAATCTCAA 6493 || || || |||| | |||| | || |||||| | | || || || | | Sbjct 1491 CAAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCA 1432 Query 6494 TCGCAAATCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAAC 6553 | || || || || ||||| || |||||||| |||||||| |||| | ||| | | Sbjct 1431 TTGCCAACCATATCGATTACGAAAAATGGAATAATCACCA---AAGAGATGCTAACAACC 1375 Query 6554 CTGTATTCAAAGTGATGGGACAATTTCTGGGATATCCAAATTTGATATCACGCACCCATG 6613 | || |||| |||||||| ||||| ||||| ||||| ||| || | |||||||| Sbjct 1374 CGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACA 1315 Query 6614 AATTCTTTGAGAAGAGTTTGATTTATTA 6641 |||||||||| || ||||| |||||||| Sbjct 1314 AATTCTTTGAAAACAGTTTAATTTATTA 1287 >seq49187 Length=20191 Score = 122 bits (134), Expect = 6e-24 Identities = 220/319 (69%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 6217 GAATTCCTGGAAATGATCGACAAACATGGACTGG-ATGATGATGATTTGATAATCGGACT 6275 || ||| |||||| || || || |||||| | || ||||| |||||||||| || Sbjct 6307 GAGTTCTTGGAAAGCATAAACGAATCTGGACTCACAAGA-GATGACCTGATAATCGGGCT 6365 Query 6276 CAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTCTTTTCATTGATGTCATGGAA 6335 ||||| ||| || |||||| | |||| | | |||||||| || | ||||| ||||| Sbjct 6366 CAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCTTCTCGCTCATGTCGTGGAA 6425 Query 6336 ATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCATTTTGTCCCTCTCTT 6395 || | |||| | || | ||| || | | || || | | ||| || || || Sbjct 6426 TCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGGAGTTCTATGTGCCCCTTTT 6485 Query 6396 TTATGGACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAAATGCTAGAAAGTTC 6455 | ||| | || |||||||||||| ||||| || | |||||| | ||||| ||||| Sbjct 6486 CTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACAAAGAAACTCCTAGATAGTTC 6545 Query 6456 ATCCGGTCAAGGGTTGAATGACTATTCTGCAATCTCAATCGCAAATCACATAGATTATGA 6515 | |||||| |||| ||||| | || || | ||||||||| |||||||||| Sbjct 6546 GATCAACCAAGGGCAGAATTACTATAACTCCATTTCTCTGGCAAATCACGTAGATTATGA 6605 Query 6516 GAAATGGAACAATCACCAG 6534 |||||||| || || ||| Sbjct 6606 AAAATGGAATAACCATCAG 6624 >seq90283 Length=1560 Score = 116 bits (128), Expect = 3e-22 Identities = 214/313 (68%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 6268 ATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTCTTTTCATTGATG 6327 || || ||||| || || || | ||| | |||| | || ||||| || || | ||| Sbjct 239 ATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCCTCATG 298 Query 6328 TCATGGAAATTGCGAGAA--TATTTTGTGATAACCGAATATCTGATCAAAACGCATTTTG 6385 | |||||| || |||| || || ||| ||||| || || ||||| || | || Sbjct 299 TTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAGCTGTATG 358 Query 6386 TCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAAATGC 6445 | || ||||| | |||| | || ||||| || ||| |||| ||| | ||| || | | Sbjct 359 TTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAAAAGTTAC 418 Query 6446 TAGAAAGTTCATCCGGTCAAGGGTTGAATGACTATTCTGCAATCTCAATCGCAAATCACA 6505 | || | ||| | |||||| | ||||||| | || || | ||||| || | Sbjct 419 TGGATAATTCCATCAATCAAGGATCAGATGACTACAACTCCATTTCTCTTGCAAACCATA 478 Query 6506 TAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTGTATTCAAAG 6565 |||| ||||| ||||||||||| |||||||| || || | ||||| || | || | || Sbjct 479 TAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAGCTTTAAGAG 538 Query 6566 TGATGGGACAATT 6578 | ||||||||||| Sbjct 539 TCATGGGACAATT 551 >seq292816 Length=4775 Score = 114 bits (126), Expect = 9e-22 Identities = 240/352 (68%), Gaps = 18/352 (5%) Strand=Plus/Minus Query 6256 GATGATTTGATAATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGA-TT 6314 ||||| ||| |||| ||||| || || |||||||||||| |||| | | ||| ||| || Sbjct 1765 GATGACTTGGTAATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAAAAGGAAGGCAGATTT 1706 Query 6315 CTTTTCATTGATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAA 6374 |||||| | ||||||||||| | || | | ||| |||| ||| || | || || || Sbjct 1705 TTTTTCACTCATGTCATGGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATAAA 1646 Query 6375 AACGCATTTTGTCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTCA- 6433 ||| ||| ||||| |||| |||| | || ||||| || ||| | || ||| | Sbjct 1645 GGAATATTATGTTCCTCTTTTTTCTGGATTGACTATGGCAGACGATCTCACCAAAGTTAT 1586 Query 6434 ------TCAAGAAAA---TGCTAGAAAGTTCATCCGGTCAAGGGTTGAATGACTATTCTG 6484 | | ||||| |||||||| || |||||||||| | |||||||| Sbjct 1585 AGAAAGTTACGAAAAAGTTGCTAGAA--CTCTGCCGGTCAAGGCCAGGTCGACTATTCAT 1528 Query 6485 CAATCTCAATCGCAAATCACATAGATTATGAGAAATGGAACAATCACCA--GAGAAGAAC 6542 ||||| | | | || || |||| || | || ||||| || || || | | || Sbjct 1527 CAATCACCTTACCCAACCATGTAGACTACAAAAAGTGGAATAACCATCAACGTGCCGA-- 1470 Query 6543 ATCAAACGAACCTGTATTCAAAGTGATGGGACAATTTCTGGGA-TATCCAAA 6593 | | ||| | || | || |||| |||||||||||||||||| ||||| || Sbjct 1469 AGCCAACTATCCCGCTTTTCAAGTAATGGGACAATTTCTGGGACTATCCGAA 1418 >seq219500 Length=51628 Score = 78.8 bits (86), Expect = 7e-11 Identities = 121/173 (70%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 6979 ATCAATCAAGATGAAACAATGCAATCGGCTGATTATCTTAATTACGGTAAAGTTCCAATC 7038 ||||| |||||| |||||||| | || | | | ||| |||||||| || || Sbjct 6294 ATCAACAGAGATGAGACAATGCAGAGCACAGACTTTTTGTCTTATGGTAAAGTACCTGTC 6235 Query 7039 TTCCGAGGGGTCATACGAGGACTAGAGACTAAAAGATGGTCCAGGGTGACCTGCGTCACC 7098 || |||| || | ||| || | ||| |||||||||| || || ||||||||| Sbjct 6234 TTTAGAGGTAATATCTTACCACTGGAAGCAAAACGATGGTCCAGAGTCACATGCGTCACC 6175 Query 7099 AATGATCAACTGCCTACTTGTGCTAATTTGCTGTCATCTGTCTCAACTAATGC 7151 |||||||| || ||| ||| ||||| |||| || | ||||||| ||||| Sbjct 6174 AATGATCAGCTTCCTTCTTTGTCTAATGTGCTCTCTACCATCTCAACAAATGC 6122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35324550522480