Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025394.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq176488 179 3e-41 seq49187 134 1e-27 seq133769 125 5e-25 seq90283 105 5e-19 >seq176488 Length=2532 Score = 179 bits (198), Expect = 3e-41 Identities = 396/590 (67%), Gaps = 8/590 (1%) Strand=Plus/Minus Query 6264 ATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGATTCTTTTCGTTAATG 6323 ||||| | ||||||||||| || || | |||| | | | |||||| || | ||| Sbjct 627 ATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTCATG 568 Query 6324 TCTTGGAGATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAAAACACACTTTGTT 6383 ||||||| ||| || |||||||||| || || || | || ||| | | || Sbjct 567 TCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAATTGTACGTG 508 Query 6384 CCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGATCaaaaaaaTGATG 6443 || | || | ||| | || ||||||||||| | || || | || ||| | | Sbjct 507 CCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAACTTCTC 448 Query 6444 GAGAGTTCATCAGGTCAGGGTCTCAACGATTATTCTTCAATATGTCTGGCTAATCACATT 6503 || ||||| | | ||| || | | ||||| || || || ||| |||| || || || Sbjct 447 GACAGTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAACCATGTT 388 Query 6504 GATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGACCTGTTTTCCGTGTC 6563 ||||| |||||||||| || ||||| | | | || ||||| ||||| || Sbjct 387 GATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTCCGAGTG 328 Query 6564 ATGGGTCAGTTCTTGGGATTTCCTAACCTTATATCCAGGACTCATGAATTCTTTGAAAAA 6623 ||||||||||| |||| | || | ||| | ||| || || || ||||| || || Sbjct 327 ATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTTCGAGAAC 268 Query 6624 AGTCTGATATATTACAATGG---GAGACCAGATTTGATGAAAGTGCAAGGAAATTCATTA 6680 ||||| || |||| |||| ||||| ||||| ||| |||| ||||| | | || Sbjct 267 AGTCTCATCTATT---ATGGACCTAGACCTGATTTAATGGAAGTACAAGGGGACACCTTG 211 Query 6681 GTCAATAACAGCAA-TCAGCGGGTATGTTGGAACGGACAGGCAGGAGGTTTGGAGGGCTT 6739 ||| ||| ||||| | | | || |||||| | || ||| ||| ||| | ||||| || Sbjct 210 ATCAGTAA-AGCAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTT 152 Query 6740 GAGGCAAAAGGGATGGAGTATTTTGAACCTATTGGTTATCCAGCGAGAATCCAAGATCAG 6799 ||| ||||| || ||||||||| |||| | | || || ||||||| | |||| | | Sbjct 151 GAGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCG 92 Query 6800 AAATACCGCAGTGAAGGTGTTGGCACAGGGTGATAATCAAGTAATCTGTA 6849 ||||||| || ||| | |||||||| || || || || || |||| Sbjct 91 AAATACCCTTGTCAAGACCCTAGCACAGGGGGACAACCAGGTGATATGTA 42 >seq49187 Length=20191 Score = 134 bits (148), Expect = 1e-27 Identities = 252/368 (68%), Gaps = 2/368 (1%) Strand=Plus/Plus Query 6251 AGATGATCTGGTAATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGATT 6310 |||||| ||| |||| || ||||||| |||||||| || | |||| | | |||| Sbjct 6345 AGATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATT 6404 Query 6311 CTTTTCGTTAATGTCTTGGAGATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAA 6370 ||| ||| | ||||| |||| | || |||||| || | || ||| | || || || Sbjct 6405 CTTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAA 6464 Query 6371 AACACACTTTGTTCCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGAT 6430 || ||| || | || |||||||||||||| |||||| |||| |||| Sbjct 6465 GGAGTTCTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGAC 6524 Query 6431 CaaaaaaaTGATGGAGAGTTC-ATCAGGTCAGGGTCTCAACGATTATTCTTCAATATGTC 6489 || ||| | | || ||||| |||| |||| | || | ||| || || | || Sbjct 6525 AAAGAAACTCCTAGATAGTTCGATCAACCAAGGG-CAGAATTACTATAACTCCATTTCTC 6583 Query 6490 TGGCTAATCACATTGATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGAC 6549 |||| |||||| | |||||||| |||||||| || |||||| | ||| | ||| | | Sbjct 6584 TGGCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTC 6643 Query 6550 CTGTTTTCCGTGTCATGGGTCAGTTCTTGGGATTTCCTAACCTTATATCCAGGACTCATG 6609 |||| ||||| || |||||||||||| | || || ||| | || | | ||||||| Sbjct 6644 CTGTGTTCCGAGTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCATG 6703 Query 6610 AATTCTTT 6617 | |||||| Sbjct 6704 AGTTCTTT 6711 >seq133769 Length=136818 Score = 125 bits (138), Expect = 5e-25 Identities = 383/588 (65%), Gaps = 8/588 (1%) Strand=Plus/Minus Query 6264 ATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGATTCTTTTCGTTAATG 6323 || ||||| || || || || || ||| |||||| | |||||||| || || | ||| Sbjct 122639 ATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATG 122580 Query 6324 TCTTGGAGATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAAAACACACTTTGTT 6383 || |||| ||||| |||||||||| || || || | || ||| | ||| Sbjct 122579 TCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTA 122520 Query 6384 CCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGATCaaaaaaaTGATG 6443 || | ||| |||| | || ||||| || || | || || | || ||| | | Sbjct 122519 CCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTC 122460 Query 6444 GAGAGTTCATCAGGTCAGGGTCTCAACGATTATTCTTCAATATGTCTGGCTAATCACATT 6503 || ||||| | | ||| || | | || || || || || ||| | || || || || Sbjct 122459 GACAGTTCTTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCATGTT 122400 Query 6504 GATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGACCTGTTTTCCGTGTC 6563 ||||| | || |||||||||||||| | | | || |||| ||| | ||| Sbjct 122399 GATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAGTC 122340 Query 6564 ATGGGTCAGTTCTTGGGATTTCCTAACCTTATATCCAGGACTCATGAATTCTTTGAAAAA 6623 ||||||||||| ||||| | || | ||| | || || ||||| ||||| || || Sbjct 122339 ATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAAC 122280 Query 6624 AGTCTGATATATTACAATGG---GAGACCAGATTTGATGAAAGTGCAAGGAAATTCATTA 6680 ||||| | ||| |||| ||||| ||||| ||| | ||||||| || | || Sbjct 122279 AGTCTTGT---CTACTATGGACCCAGACCGGATTTAATGGACATGCAAGGGGATACTTTG 122223 Query 6681 GTCAATAACAGCA-ATCAGCGGGTATGTTGGAACGGACAGGCAGGAGGTTTGGAGGGCTT 6739 | | || |||| | | | ||||| ||| | ||||| ||||||| | || ||| | Sbjct 122222 ATTAGCAA-AGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCT 122164 Query 6740 GAGGCAAAAGGGATGGAGTATTTTGAACCTATTGGTTATCCAGCGAGAATCCAAGATCAG 6799 || |||||||| ||||| ||| | || || | || ||| |||||| | || | | | Sbjct 122163 AAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAACCCG 122104 Query 6800 AAATACCGCAGTGAAGGTGTTGGCACAGGGTGATAATCAAGTAATCTG 6847 || || ||| || || || || || || || ||||| ||||| Sbjct 122103 TAACACTTTAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTG 122056 >seq90283 Length=1560 Score = 105 bits (116), Expect = 5e-19 Identities = 370/567 (65%), Gaps = 18/567 (3%) Strand=Plus/Plus Query 6250 AAGATGATCTGGTAATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGAT 6309 |||| || ||||| || || ||||| ||||||||| |||| | |||| | || ||| Sbjct 225 AAGAAGACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGAT 284 Query 6310 TCTTTTCGTTAATGTCTTGGAGATTACGGGAA--TACTTTGTAATTACTGAGTATTTGAT 6367 | || || | |||| |||| ||| | || ||||| || || ||||| | || Sbjct 285 TTTTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCAT 344 Query 6368 TAAAACACACTTTGTTCCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGT 6427 || | | ||||||| | || |||||| || ||||| || ||| |||| || Sbjct 345 CAAGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGT 404 Query 6428 GATCaaaaaaaTGATGGAGAGTTC-ATCAGGTCAGGGTCTCA-ACGATTATTCTTCAATA 6485 || |||||| | |||| | ||| |||| ||| || ||| | || || || || Sbjct 405 GACCAAAAAGTTACTGGATAATTCCATCAA-TCAAGGA-TCAGATGACTACAACTCCATT 462 Query 6486 TGTCTGGCTAATCACATTGATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAAT 6545 | ||| || || || || || ||||| ||||||||||| || ||||| || | || Sbjct 463 TCTCTTGCAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAAC 522 Query 6546 GGACCTGTTTTCCGTGTCATGGGTCAGTTCTTGGGATTTCCTAACCT--TATATCCAGGA 6603 | || | ||| | |||||||| || ||| | || ||| ||| | | | | || | Sbjct 523 GATCCAGCTTTAAGAGTCATGGGACAATTCATCGG-TTTACTAGAGTTGTTTGTTCA-AA 580 Query 6604 CTCATGAATTCTTTGAAAAAAGTCTGATATATTACAATGGGA----GACCAGATTTGATG 6659 | || || ||||||| | || || | || ||| ||| | || || || ||| Sbjct 581 CACACGAGTTCTTTGGAGGCAGCCTTGTCTACTAC----GGACCCCGTCCTGACTTAATG 636 Query 6660 AAAGTGCAAGGAAATTCATTAGTCAATAACAGCAATCAGCGGGTATGTTGGAACGGACAG 6719 |||| | ||| | ||| || || || | || | || || ||||| ||||| Sbjct 637 GAAGTAGATGGAGAGTCACTACGGAACAAAGGGAACTTCCCTGTCTGCTGGAAGAGACAG 696 Query 6720 GCAGGAGGTTTGGAGGGCTTGAGGCAAAAGGGATGGAGTATTTTGAACCTATTGGTTATC 6779 ||||| ||||| || | | ||||| || ||||| ||| | || |||||||| || Sbjct 697 CTCGGAGGCTTGGAAGGTCTCCGACAAAAAGGTTGGAGCATTGTAAATCTATTGGTCCTC 756 Query 6780 CAGCGAGAATCCAAGATCAGAAATACC 6806 | || ||| |||||| ||||| ||| Sbjct 757 CCGCACGAAGCCAAGAGTAGAAACACC 783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35267189953296