Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025396.1 Length=15442 Score E Sequences producing significant alignments: (Bits) Value seq283927 95.1 1e-15 >seq283927 Length=152763 Score = 95.1 bits (104), Expect = 1e-15 Identities = 216/318 (68%), Gaps = 24/318 (8%) Strand=Plus/Minus Query 10689 AAGAAATATTATGTACCATTGTTTGAAGGACTTACAATGGCAGATGATTTGAACACTGTA 10748 ||| ||| || |||| | |||| |||||| || |||||||| || |||| || | Sbjct 1552 AAGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGA----TGGA 1497 Query 10749 ATT----AAAAAGATGCTGGACGTGTCATCCGGTCAAGGA----ACAAGAAACTAT-GAT 10799 | | |||||| || | ||| ||| | || ||||| || | | | || ||| Sbjct 1496 AGTCGCAAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGAT 1437 Query 10800 TATGTATCCATAGCCAACAACATTGATTATGAGAAATGGAATAATTATCAAAGGAAAGAA 10859 || |||| |||||| | || ||||| || |||||||||||| | ||||| ||| Sbjct 1436 TA-----CCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAG---AGAT 1385 Query 10860 TCAAATGGACCGGTATTCAGAGTAATGGGACAATTCCTTGGAATGGAAAATCTTATAGTT 10919 | || ||||| ||||| || ||||| |||||| | ||| || ||| | || | Sbjct 1384 GCTAACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACT 1325 Query 10920 CGGACACATGAATTCTTTGAAAATAGTTTGGTCTATTA-TAACCAGCGAGCAGACTTAAT 10978 || || || ||||||||||||| ||||| | ||||| |||| || | ||| | || Sbjct 1324 CGCACCCACAAATTCTTTGAAAACAGTTTAATTTATTACGGACCA-CGTCCGGACCTGAT 1266 Query 10979 GATGGTGCAAGGGAGACA 10996 | || ||||||||||| Sbjct 1265 GGAGG-CCAAGGGAGACA 1249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 49085395102380