Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025397.1 Length=13203 Score E Sequences producing significant alignments: (Bits) Value seq49187 91.5 1e-14 seq90283 78.8 8e-11 >seq49187 Length=20191 Score = 91.5 bits (100), Expect = 1e-14 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 8149 TTCTTAAAAAATATAGATGAATATGGATTACCAAAAGAAGATCTTATTATCGGATTGAAG 8208 ||||| ||| ||| | |||| |||| | ||| ||| || || || ||||| | || Sbjct 6310 TTCTTGGAAAGCATAAACGAATCTGGACTCACAAGAGATGACCTGATAATCGGGCTCAAA 6369 Query 8209 CCCAAGGAAAGAGAATTGAAACGAACCGG-ACGATATTTCTCTCTTATGTCCTTTAACTT 8267 |||||||||||| | ||| || || | ||| ||||| || ||||| | || | Sbjct 6370 GTAAAGGAAAGAGAAGT-AAAGAAAGAGGAAAGATTCTTCTCGCTCATGTCGTGGAATCT 6428 Query 8268 GAGACATTACTTTGTCATAACAGAATTATTGATCAAAGAGCACTTTGTTCCGTTGTTTTC 8327 ||| || |||| |||| |||||| || || || ||| || ||| || | || || Sbjct 6429 GAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGGAGTTCTATGTGCCCCTTTTCTC 6488 Query 8328 TGGATTAACTATGGCTGATGATCTGCAAGAGTTAACaaaaaaaTTATTGGATAG 8381 ||||| |||||||||||||||||| || | ||||| ||| | | ||||| Sbjct 6489 GGGATTGACTATGGCTGATGATCTGACTAAGGTGACAAAGAAACTCCTAGATAG 6542 >seq90283 Length=1560 Score = 78.8 bits (86), Expect = 8e-11 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 8165 ATGAATATGGATTACCAAAAGAAGATCTTATTATCGGATTGAAGCCCAAGGAAAGAGAAT 8224 |||| | ||| | || |||||||| || | || || | ||| |||||| | ||| Sbjct 207 ATGAGTCCGGACTCCCTAAAGAAGACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAG 266 Query 8225 TGAA-ACGAACCGGACGATATTTCTCTCTTATGTCCTTTAACTT--GAGACATTACTTTG 8281 | || | | | ||| ||| |||||| || |||| | ||||| |||||| ||||| | Sbjct 267 TCAAGAAGGAGGGGA-GATTTTTCTCCCTCATGTTATGGAACTTAAGAGACAGTACTTCG 325 Query 8282 TCATAACAGAATTATTGATCAAAGAGCACTTTGTTCCGTTGTTTTCTGGATTAACTATGG 8341 | || || | | ||||| |||| | ||||||| | || ||||||||||| |||| Sbjct 326 TGTCGACCGAGTACCTCATCAAGGAGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGG 385 Query 8342 CTGATGATCTG-CAAGAGTTAACaaaaaaaTTATTGGATA 8380 | || ||| || | | || | || ||||| ||| |||||| Sbjct 386 CGGACGATTTGACCAAAG-TGACCAAAAAGTTACTGGATA 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41951204928136