Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025399.1 Length=11220 Score E Sequences producing significant alignments: (Bits) Value seq176488 87.8 1e-13 >seq176488 Length=2532 Score = 87.8 bits (96), Expect = 1e-13 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 6489 GAAGACTTGATCATCGGGTTGAAAGCTAAGGAGAGGGAATTAAAGATA-ATTGGCAGATA 6547 |||||||||||||| || ||||||| |||||||| ||| |||||| | | |||| || Sbjct 639 GAAGACTTGATCATTGGCTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGGCA-ATT 581 Query 6548 TTTTGCTCTGATGAGTTGGCTGTTGAGGACTTACTTTGTTCTGACTGAACTCCTGATCAA 6607 || | || ||| |||| ||| ||| |||||||| || |||| || || || Sbjct 580 CTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAA 521 Query 6608 AGAACATTTCATCCCACTGTTTGATGGCATAACGATGGCAGATGATCTGAAAAATGT 6664 |||| | | | |||||||| | || | |||||||||||||| || | ||| || Sbjct 520 AGAATTGTACGTGCCACTGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGT 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35640033652992