Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025400.1 Length=15444 Score E Sequences producing significant alignments: (Bits) Value seq90283 107 2e-19 seq283927 100 3e-17 >seq90283 Length=1560 Score = 107 bits (118), Expect = 2e-19 Identities = 244/364 (67%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 10581 TGGTGATAGGTTTAAAAGCCAAAGAAAGGGAGCTTAAAGAAGAAGGCAGGTTTTTCTCTT 10640 |||| ||||| | || | || ||| |||| | || | || || || |||||||| Sbjct 234 TGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTCTCCC 293 Query 10641 TAATGAGTTATG--AGTTAAGAGAC--TACTTTGTTGCAACTGAATACTTGATCAAAAAA 10696 | ||| ||||| | ||||||||| ||||| || | || || ||| | ||||| | Sbjct 294 TCATG--TTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGGAG 351 Query 10697 TATTATGTACCATTATTCGAAGGACTTACAATGGCGGATGATTTGAATACAGTCATCAAA 10756 ||||| || | ||| ||| | ||||||||||| ||||||| | ||| | |||| Sbjct 352 CTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCAAA 411 Query 10757 AAGATGCTGGATGTGTCCTCCGGCCAAGGAACAAGAAACTATGATTATGTGTCAATAGCT 10816 ||| | |||||| ||| | |||||| || |||| | | | || | || Sbjct 412 AAGTTACTGGATAATTCCATCAATCAAGGATCAGATGACTACAACTCCATTTCTCTTGCA 471 Query 10817 AACAATATTGATTATGAAAAATGGAATAATTATCAAAGAAAAGAATCAAATGGACCAGTA 10876 ||| |||| || |||||||||||||| || | || || || | | || | |||| Sbjct 472 AACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAGCT 531 Query 10877 TTCAGAGTAATGGGGCAATTCCTTGGAATGGAAAATTTGATAGTTCGGACACATGAATTC 10936 || ||||| ||||| |||||| | || | | | ||| | |||| ||||| || ||| Sbjct 532 TTAAGAGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAACACACGAGTTC 591 Query 10937 TTTG 10940 |||| Sbjct 592 TTTG 595 >seq283927 Length=152763 Score = 100 bits (110), Expect = 3e-17 Identities = 112/149 (75%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 10811 ATAGCTAACAATATTGATTATGAAAAATGGAATAATTATCAAAGAAAAGAATCAAATGGA 10870 || || ||| |||| ||||| ||||||||||||||| | |||||| | | | || Sbjct 1432 ATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGAGATG---CTAACAAC 1376 Query 10871 CCAGTATTCAGAGTAATGGGGCAATTCCTTGGAATGGAAAATTTGATAGTTCGGACACAT 10930 || || ||||| || |||||||||||| | ||| || ||| ||| || ||| || || Sbjct 1375 CCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCAC 1316 Query 10931 GAATTCTTTGAAAATAGTTTGGTTTATTA 10959 ||||||||||||| ||||| ||||||| Sbjct 1315 AAATTCTTTGAAAACAGTTTAATTTATTA 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 49091767759972