Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025405.1 Length=11124 Score E Sequences producing significant alignments: (Bits) Value seq283927 91.5 1e-14 >seq283927 Length=152763 Score = 91.5 bits (100), Expect = 1e-14 Identities = 245/371 (66%), Gaps = 13/371 (4%) Strand=Plus/Minus Query 6273 TTCGAGAAAGATGATCTTATAATTGGATTGAGAGCAAAGGAGAGAGAGTTGAAGAACAAA 6332 || || | ||||||||| || |||||||| | || |||||| | || | ||||| || Sbjct 1677 TTGGACAGAGATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAA 1618 Query 6333 GGACGATTCTTTGCACTGATGTCTTGGAGACTTAGAGAATATTTTGTGGTCACAGAATAT 6392 ||| ||||||| | || ||||| |||| ||| | ||||||| || | |||||| Sbjct 1617 GGAAGATTCTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAAACC 1558 Query 6393 TTGATCAAAAAGCATT--ACATCCCTTTGTTCAAAGGCTTGACCATGGCGGATGATCTAA 6450 | | ||| | ||| |||| || | || ||| | |||||||| || || | | Sbjct 1557 TA---CTAAAGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGA 1501 Query 6451 ATACAGTAATAGAAAAGATGATTCAGAGCACAAGCGGTCATGATAGAGAAGATAGCCGAA 6510 ||| | ||||| || | | | || || || | || ||| || | Sbjct 1500 TGGAAGTCGCAAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAA- 1442 Query 6511 GACTTG-TCACCGTCTGCAACCATTTGGATTATGAAAAATGGAACAACAATCAAAGGGAT 6569 ||| | ||| | ||||||| | ||||| ||||||||||| || | ||||| ||| Sbjct 1441 ---TTGATTACCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGAGAT 1385 Query 6570 GAGTCAAACCATGCGGTATTCAAAGTGATGGGCCAATTTTTAGGATTTCCCAATTTGATA 6629 | | ||| | |||| |||| |||||||| ||||| || ||| | || || ||| || Sbjct 1384 G---CTAACAACCCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTGTTA 1328 Query 6630 ACTAGAACCCA 6640 ||| | ||||| Sbjct 1327 ACTCGCACCCA 1317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35334110617344